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Home > SCOP hierarchy > Domain combination - _gap_,90229,54791,90229

Domain combinations for _gap_,90229,54791,90229 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
54791 - Eukaryotic type KH-domain (KH-domain type I)
90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Pinus_taeda (Loblolly pine) 1

Picea_abies (Norway spruce) 1

Eucalyptus_grandis_v201 (Rose gum) 1

Gossypium_raimondii_v221 1

Medicago_truncatula_ (Barrel medic) 1

Fragaria_vesca_ (Wild strawberry) 1

Malus_domestica_v196 (Apple) 4

Solanum_lycopersicum_v.2.3 (Tomato) 1

Actinidia_chinensis_Hongyang_ 2

Triticum_urartu_22 2

Triticum_aestivum_22 (Bread wheat) 2

Oryza_barthii_22 (African wild rice) 2

Oryza_meridionalis_22 2

Oryza_glumaepatula_22 1

Oryza_punctata_22 1

Oryza_nivara_22 2

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 2

Panicum_virgatum_v202 (Switchgrass) 1

Setaria_italica_v164 (Foxtail millet) 2

Zea_mays_v181 (Maize) 1

Musa_balbisiana (Balbis banana) 1

Physcomitrella_patens 0

Ostreococcus_sp._RCC809_ 1

Ostreococcus_tauri_ 1

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Strains
Genome Number

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 2

Others
Genome Number

Malus_x_domestica_(Duplicate) (Apple) 4

Nicotiana_benthamiana_0.4.4_(Early_draft) 5

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

STRING_v9.0.5_(STRING) 3

NCBI_2017_08_genome 6

Uniprot_2018_03_genome 459

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