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Home > SCOP hierarchy > Domain combination - _gap_,90229,90229,90229,_gap_

Domain combinations for _gap_,90229,90229,90229,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
90229 - CCCH zinc finger
90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 4

Pan_troglodytes_76_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_76_3.1 (Western gorilla) 4

Pongo_abelii_76_2 (Sumatran orangutan) 1

Nomascus_leucogenys_76_1.0 (Northern white-cheeked gibbon) 2

Papio_anubis_76 (Olive baboon) 3

Macaca_mulatta_76_1 (Rhesus monkey) 4

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 4

Otolemur_garnettii_76_3 (Small-eared galago) 2

Microcebus_murinus_76_1 (Gray mouse lemur) 1

Rattus_norvegicus_76_5.0 (Norway rat) 3

Mus_musculus_76_38 (House mouse) 2

Dipodomys_ordii_76_1 (Ord's kangaroo rat) 2

Ictidomys_tridecemlineatus_76_2 (Thirteen-lined ground squirrel) 3

Heterocephalus_glaber_v1.7-2 (Naked mole-rat) 2

Cavia_porcellus_76_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_76_2 (Rabbit) 3

Ochotona_princeps_76 (American pika) 2

Tupaia_belangeri_76 (Northern tree shrew) 1

Sus_scrofa_76_10.2 (Pig) 1

Bos_taurus_76_3.1 (Cattle) 2

Ovis_aries_76_3.1 (Sheep) 3

Vicugna_pacos_76_1 (Alpaca) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_76_1 (Giant panda) 2

Canis_familiaris_76_3.1 (Dog) 2

Felis_catus_76_6.2 (Domestic cat) 2

Equus_caballus_76_2 (Horse) 1

Myotis_lucifugus_76_2.0 (Little brown bat) 1

Pteropus_vampyrus_76_1 (Large flying fox) 2

Sorex_araneus_76_1 (European shrew) 2

Erinaceus_europaeus_76 (Western European hedgehog) 1

Procavia_capensis_76_1 (Cape rock hyrax) 1

Loxodonta_africana_76_3 (African savanna elephant) 3

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 2

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 2

Ornithorhynchus_anatinus_76_5 (Platypus) 3

Meleagris_gallopavo_76_2 (Turkey) 1

Gallus_gallus_76_4 (Chicken) 1

Anas_platyrhynchos_76_1.0 (Mallard) 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Pelodiscus_sinensis_76_1.0 (Chinese soft-shelled turtle) 3

Anolis_carolinensis_76_2.0 (Green anole) 2

Xenopus_laevis_ (African clawed frog) 4

Xenopus_tropicalis_76_4.2 (Tropical clawed frog) 3

Latimeria_chalumnae_76_1 (Coelacanth) 1

Lepisosteus_oculatus_76 (Spotted gar) 2

Gadus_morhua_76_1 (Atlantic cod) 2

Tetraodon_nigroviridis_76_8 (Spotted green pufferfish) 3

Takifugu_rubripes_76_4 (Torafugu) 10

Gasterosteus_aculeatus_76_1 (Three-spined stickleback) 2

Oryzias_latipes_76_1 (Japanese medaka) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 2

Poecilia_formosa_76 (Amazon molly) 2

Oreochromis_niloticus_76_1.0 (Nile tilapia) 5

Astyanax_mexicanus_76 (Mexican tetra) 2

Danio_rerio_76_9 (Zebrafish) 2

Ciona_intestinalis_76 (Vase tunicate) 1

Capitella_sp._I_ 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1

Heliconius_melpomene_ (Postman butterfly) 1

Bombyx_mori_ (Domestic silkworm) 1

Nasonia_vitripennis_ (Jewel wasp) 0

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 1

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Acyrthosiphon_pisum_ (Pea aphid) 1

Daphnia_pulex_ (Common water flea) 1

Sarcoptes_scabiei 1

Tetranychus_urticae_ (Two-spotted spider mite) 1

Pristionchus_pacificus_ 1

Meloidogyne_incognita_ (Southern root-knot nematode) 2

Onchocerca_volvulus_22 1

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 2

Hymenolepis_microstoma_ 1

Echinococcus_multilocularis_ 1

Echinococcus_granulosus_ 1

Taenia_solium_ (Pork tapeworm) 1

Schistosoma_mansoni_ 1

Mnemiopsis_leidyi (Sea walnut) 1

Hydra_vulgaris 1

Amphimedon_queenslandica 1

Sphaeroforma_arctica_JP610_ 1

Ustilago_maydis_ 0

Fomitiporia_mediterranea_v1.0 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Magnaporthe_poae_ATCC_64411_22 1

Podospora_anserina_ 1

Sporotrichum_thermophile_ATCC_42464_ 1

Thielavia_terrestris_NRRL_8126_ 1

Neurospora_discreta_FGSC_8579_ 1

Neurospora_crassa_OR74A_ 1

Cryphonectria_parasitica_ (Chestnut blight fungus) 1

Verticillium_albo-atrum_VaMs.102_ 1

Verticillium_dahliae_VdLs.17_ 1

Acremonium_alcalophilumv_1.0 1

Trichoderma_virens_Gv29-8_ 1

Amorphotheca_resinae_v1.0 (Creosote fungus) 2

Botrytis_cinerea_B05.10_ 2

Blumeria_graminis_22 1

Zasmidium_cellare_ATCC_36951_v1.0 1

Paracoccidioides_brasiliensis_Pb18_ 1

Coccidioides_posadasii_RMSCC_3488_ 1

Coccidioides_immitis_RS_ 1

Ajellomyces_dermatitidis_SLH14081_ 1

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Microsporum_canis_CBS_113480_ 1

Trichophyton_equinum_CBS_127.97_ 1

Trichophyton_tonsurans_CBS_112818_ 1

Trichophyton_rubrum_CBS_118892_ 1

Uncinocarpus_reesii_1704_ 1

Penicillium_chrysogenum_Wisconsin_54-1255_ 1

Aspergillus_fumigatus_Af293 2

Aspergillus_nidulans_FGSC_A4_ 1

Aspergillus_sydowii_v1.0 1

Aspergillus_versicolor_v1.0 1

Aspergillus_carbonarius_ITEM_5010_ 1

Neosartorya_fischeri_NRRL_181_ 2

Aspergillus_terreus_NIH2624_ 1

Aspergillus_wentii_v1.0 1

Aspergillus_niger_22 1

Aspergillus_niger_ATCC_1015_ 1

Aspergillus_flavus_NRRL3357_ 2

Aspergillus_clavatus_NRRL_1_ 2

Penicillium_marneffei_ATCC_18224_ 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Candida_dubliniensis_CD36_ 1

Candida_parapsilosis_ 1

Debaromyces_hansenii 1

Spizellomyces_punctatus_DAOM_BR117_ 1

Selaginella_moellendorffii_ 2

Pinus_taeda (Loblolly pine) 5

Picea_abies (Norway spruce) 1

Eucalyptus_grandis_v201 (Rose gum) 0

Theobroma_cacao_B97-61/B2_v1 (Cacao) 0

Gossypium_raimondii_v221 7

Citrus_clementina_v165 2

Citrus_sinensis_v154 (Sweet orange) 2

Thellungiella_halophila_v173 1

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 5

Capsella_rubella_v183 0

Arabidopsis_lyrata_ (Lyrate rockcress) 0

Arabidopsis_thaliana_10 (Thale cress) 0

Carica_papaya_ (Papaya) 0

Medicago_truncatula_ (Barrel medic) 3

Phaseolus_vulgaris_v186 (French bean) 2

Glycine_max_v109 (Soybean) 0

Cucumis_sativus_v122 (Cucumber) 3

Fragaria_vesca_ (Wild strawberry) 1

Malus_domestica_v196 (Apple) 1

Prunus_persica_v139 (Peach) 1

Linum_usitatissimum_v200 (Flax) 2

Manihot_esculenta_v147 (Cassava) 1

Populus_trichocarpa_v156 (Black cottonwood) 2

Vitis_vinifera_ (Wine grape) 1

Mimulus_guttatus_v140 (Spotted monkey flower) 1

Solanum_lycopersicum_v.2.3 (Tomato) 1

Solanum_tuberosum_ (Potato) 8

Actinidia_chinensis_Hongyang_ 5

Aquilegia_coerulea_v195 2

Triticum_urartu_22 2

Triticum_aestivum_22 (Bread wheat) 3

Aegilops_tauschii_22 1

Brachypodium_distachyon_ (Stiff brome) 4

Oryza_barthii_22 (African wild rice) 0

Oryza_meridionalis_22 1

Oryza_glumaepatula_22 6

Oryza_glaberrima (African rice) 1

Oryza_punctata_22 5

Oryza_nivara_22 2

Oryza_brachyantha_22 (Malo sina) 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1

Oryza_sativa_v193 (Rice) 1

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 4

Panicum_virgatum_v202 (Switchgrass) 3

Setaria_italica_v164 (Foxtail millet) 1

Zea_mays_subsp._mays_ (Maize) 2

Zea_mays_v181 (Maize) 2

Sorghum_bicolor_ (Sorghum) 0

Musa_balbisiana (Balbis banana) 5

Musa_acuminata_22 (Wild Malaysian banana) 1

Amborella_trichopoda_22 3

Physcomitrella_patens 1

Chlorella_variabilis_sp._NC64A_ 1

Ectocarpus_siliculosus 1

Albugo_laibachii_22 0

Pythium_ultimum_v1.7-2 0

Pythium_aphanidermatum_DAOM_BR444_22 0

Pythium_vexans_DAOM_BR484_22 0

Phytophthora_ramorum_1.1 (Sudden oak death agent) 0

Phytophthora_sojae_1.1 0

Phytophthora_infestans_T30-4_ 1

Phytophthora_capsici_ 1

Hyaloperonospora_arabidopsidis_22 0

Perkinsus_marinus_ATCC_50983_ 7

Tetrahymena_thermophila_SB210_1_ 2

Cryptosporidium_hominis 1

Cryptosporidium_muris 2

Cryptosporidium_parvum_Iowa_II 1

Neospora_caninum 2

Toxoplasma_gondii_VEG 2

Toxoplasma_gondii_ME49 2

Toxoplasma_gondii_GT1 2

Symbiodinium_minutum_clade_B1_v1.2 2

Guillardia_theta_CCMP2712_v1.0_ 1

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Strains
Genome Number

Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2) (Tropical clawed frog) 3

Ascaris_suum_Victoria/Ghent_ (Pig roundworm) 2

Cryptococcus_neoformans_var._grubii_H99_ 0

Cryptococcus_neoformans_B-3501A_ 0

Paracoccidioides_brasiliensis_Pb01_ 1

Coccidioides_posadasii_str._Silveira_ 1

Coccidioides_immitis_RMSCC_3703_ 1

Coccidioides_immitis_RMSCC_2394_ 1

Coccidioides_immitis_H538.4_ 1

Ajellomyces_dermatitidis_ER-3_ 1

Histoplasma_capsulatum_H143 1

Histoplasma_capsulatum_H88 1

Histoplasma_capsulatum_G186AR 1

Aspergillus_fumigatus_A1163_ 2

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 0

Hordeum_vulgare_22 (Domesticated barley) 13

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 1

Neospora_caninum_Nc-Liverpool_6.2 2

Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 2

Pan_troglodytes_69_2.1.4 (Chimpanzee) 2

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 1

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 1

Macaca_mulatta_69_1 (Rhesus monkey) 2

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 2

Otolemur_garnettii_69_3 (Small-eared galago) 2

Microcebus_murinus_69_1 (Gray mouse lemur) 1

Rattus_norvegicus_69_3.4 (Norway rat) 2

Mus_musculus_69_38 (House mouse) 2

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 2

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_69_2 (Rabbit) 2

Ochotona_princeps_69 (American pika) 2

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 1

Bos_taurus_69_3.1 (Cattle) 2

Vicugna_pacos_69_1 (Alpaca) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 2

Ailuropoda_melanoleuca_69_1 (Giant panda) 2

Canis_familiaris_69_3.1 (Dog) 2

Equus_caballus_69_2 (Horse) 1

Myotis_lucifugus_69_2.0 (Little brown bat) 1

Pteropus_vampyrus_69_1 (Large flying fox) 2

Sorex_araneus_69_1 (European shrew) 2

Erinaceus_europaeus_69 (Western European hedgehog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 2

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 2

Ornithorhynchus_anatinus_69_5 (Platypus) 2

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 1

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 2

Anolis_carolinensis_69_2.0 (Green anole) 2

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 1

Gadus_morhua_69_1 (Atlantic cod) 2

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 2

Takifugu_rubripes_69_4 (Torafugu) 2

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 2

Oryzias_latipes_69_1 (Japanese medaka) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 2

Ciona_intestinalis_69 (Vase tunicate) 1

Arabidopsis_thaliana_10 (Thale cress) 0

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 4

Homo_sapiens__(NCBI_version) (Human) 2

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 2

Loa_loa_v3.3_(Request) (Eye worm) 1

Wuchereria_bancrofti_v1.0_(Request) (Agent of lymphatic filariasis) 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

Lotus_japonicus__(Early_assembly) 1

Malus_x_domestica_(Duplicate) (Apple) 1

Ricinus_communis__(Early_assembly) (Castor bean) 1

Nicotiana_benthamiana_0.4.4_(Early_draft) 4

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1

Phoenix_dactylifera__(Early_draft) (Date palm) 1

STRING_v9.0.5_(STRING) 65

Protozoadb_2010_08_(Protozoadb) 11

Uniprot_2018_03_genome 10934

NCBI_2017_08_genome 1250

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Domain combinations for _gap_,90229,90229,90229,_gap_ superfamilies in groups of genomes