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  Home > SCOP hierarchy > Domain combination - _gap_,90229,_gap_

Domain combinations for _gap_,90229,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_76_3.1   (Western gorilla)   6
Pongo_abelii_76_2   (Sumatran orangutan)   4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5
Papio_anubis_76   (Olive baboon)   3
Macaca_mulatta_76_1   (Rhesus monkey)   6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   9
Otolemur_garnettii_76_3   (Small-eared galago)   3
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   7
Mus_musculus_76_38   (House mouse)   10
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4
Cavia_porcellus_76_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_76_2   (Rabbit)   7
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   4
Bos_taurus_76_3.1   (Cattle)   4
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   5
Felis_catus_76_6.2   (Domestic cat)   5
Equus_caballus_76_2   (Horse)   4
Myotis_lucifugus_76_2.0   (Little brown bat)   4
Pteropus_vampyrus_76_1   (Large flying fox)   4
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   4
Echinops_telfairi_76   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_76_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_76_5   (Platypus)   5
Saccoglossus_kowalevskii_v3.0 14
Petromyzon_marinus_76_7.0   (Sea lamprey)   4
Meleagris_gallopavo_76_2   (Turkey)   4
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   2
Xenopus_laevis_   (African clawed frog)   11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9
Latimeria_chalumnae_76_1   (Coelacanth)   8
Lepisosteus_oculatus_76   (Spotted gar)   5
Gadus_morhua_76_1   (Atlantic cod)   10
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6
Takifugu_rubripes_76_4   (Torafugu)   23
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8
Oryzias_latipes_76_1   (Japanese medaka)   6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6
Poecilia_formosa_76   (Amazon molly)   5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6
Astyanax_mexicanus_76   (Mexican tetra)   4
Danio_rerio_76_9   (Zebrafish)   8
Oikopleura_dioica 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7
Adineta_vaga 6
Octopus_bimaculoides_280 5
Crassostrea_gigas_22   (Pacific oyster)   7
Lottia_gigantea_   (Owl limpet)   4
Helobdella_robusta_ 5
Capitella_sp._I_ 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   5
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   4
Drosophila_grimshawi_1.3 5
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 4
Drosophila_persimilis_1.3 4
Drosophila_suzukii 3
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   11
Drosophila_erecta_1.3 4
Drosophila_ananassae_1.3 5
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 4
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   7
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_darlingi_22   (American malaria mosquito)   4
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   3
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 4
Sarcoptes_scabiei 6
Tetranychus_urticae_   (Two-spotted spider mite)   3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3
Pristionchus_pacificus_ 5
Meloidogyne_incognita_   (Southern root-knot nematode)   12
Meloidogyne_hapla_ 4
Onchocerca_volvulus_22 14
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   12
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 8
Caenorhabditis_remanei_ 4
Caenorhabditis_elegans_76_235   (Roundworm)   11
Caenorhabditis_briggsae_2 7
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 2
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 2
Mnemiopsis_leidyi   (Sea walnut)   3
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   4
Hydra_vulgaris 4
Amphimedon_queenslandica 4
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 4
Capsaspora_owczarzaki_ATCC_30864_ 4
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 3
Phycomyces_blakesleeanus_ 2
Rhizopus_oryzae_RA_99-880_ 3
Mucor_circinelloides_ 2
Rhizomucor_miehei_CAU432_ 3
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 1
Ustilago_maydis_ 3
Mixia_osmundae_IAM_14324_v1.0 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 5
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 3
Microbotryum_violaceum_22 3
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 1
Piloderma_croceum_F_1598_v1.0 2
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 3
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 1
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   3
Amanita_thiersii_Skay4041_v1.0 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 2
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 4
Schizophyllum_commune_ 1
Stereum_hirsutum_FP-91666_SS1__v1.0 3
Heterobasidion_annosum_ 3
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 3
Sebacina_vermifera_MAFF_305830_v1.0 5
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3
Phanerochaete_chrysosporium_RP-78_2.1 4
Dichomitus_squalens 2
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   3
Daldinia_eschscholzii_EC12_v1.0 3
Apiospora_montagnei_NRRL_25634_v1.0 3
Magnaporthe_poae_ATCC_64411_22 2
Magnaporthe_grisea_70-15_ 2
Podospora_anserina_ 3
Sporotrichum_thermophile_ATCC_42464_ 4
Thielavia_terrestris_NRRL_8126_ 5
Chaetomium_globosum_CBS_148.51_ 3
Neurospora_tetrasperma_ 3
Neurospora_discreta_FGSC_8579_ 3
Neurospora_crassa_OR74A_ 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 3
Verticillium_dahliae_VdLs.17_ 2
Acremonium_alcalophilumv_1.0 3
Glomerella_graminicola_22 4
Fusarium_graminearum_ 2
Nectria_haematococca_mpVI_ 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 2
Trichoderma_atroviride_ 2
Trichoderma_citrinoviride_v1.0 2
Trichoderma_reesei_1.2 2
Trichoderma_virens_Gv29-8_ 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2
Trichoderma_harzianum_CBS_226.95_v1.0 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   3
Botrytis_cinerea_B05.10_ 2
Sclerotinia_sclerotiorum_ 2
Blumeria_graminis_22 3
Didymella_exigua_CBS_183.55_v1.0 4
Leptosphaeria_maculans_22 6
Setosphaeria_turcica_v1.0 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4
Cochliobolus_victoriae_FI3_v1.0 4
Cochliobolus_carbonum_26-R-13_v1.0 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 5
Cochliobolus_lunatus_m118_v2.0 2
Pyrenophora_teres_f._teres_22 4
Pyrenophora_tritici-repentis_ 5
Stagonospora_nodorum_ 4
Mycosphaerella_graminicola_IPO323_ 3
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 4
Septoria_musiva_v1.0 3
Mycosphaerella_fijiensis_CIRAD86_ 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4
Paracoccidioides_brasiliensis_Pb18_ 3
Coccidioides_posadasii_RMSCC_3488_ 3
Coccidioides_immitis_RS_ 3
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 3
Trichophyton_equinum_CBS_127.97_ 2
Trichophyton_verrucosum_HKI_0517_ 2
Arthroderma_benhamiae_CBS_112371_ 3
Trichophyton_tonsurans_CBS_112818_ 3
Trichophyton_rubrum_CBS_118892_ 3
Uncinocarpus_reesii_1704_ 3
Aspergillus_zonatus_v1.0 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 2
Penicillium_chrysogenum_v1.0 2
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 3
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 3
Aspergillus_sydowii_v1.0 4
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 3
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 3
Aspergillus_terreus_NIH2624_ 3
Aspergillus_tubingensis_v1.0 2
Aspergillus_wentii_v1.0 3
Aspergillus_oryzae_RIB40_ 3
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 2
Penicillium_marneffei_ATCC_18224_ 3
Tuber_melanosporum_Mel28_22 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3
Hansenula_polymorpha_v2.0 3
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 3
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3
Candida_dubliniensis_CD36_ 4
Candida_tropicalis_MYA-3404_ 4
Candida_parapsilosis_ 3
Candida_albicans_SC5314 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 1
Wickerhamomyces_anomalus 1
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 2
Candida_glabrata_CBS138 2
Kluyveromyces_thermotolerans_CBS_6340 4
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 2
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 2
Saccharomyces_paradoxus_MIT 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   1
Catenaria_anguillulae_PL171_v1.0 1
Allomyces_macrogynus_ATCC_38327_ 4
Spizellomyces_punctatus_DAOM_BR117_ 3
Dictyostelium_discoideum 2
Dictyostelium_purpureum_ 2
Entamoeba_dispar_1.2 1
Selaginella_moellendorffii_ 6
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   4
Eucalyptus_grandis_v201   (Rose gum)   10
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10
Gossypium_raimondii_v221 31
Citrus_clementina_v165 12
Citrus_sinensis_v154   (Sweet orange)   10
Thellungiella_halophila_v173 8
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   18
Capsella_rubella_v183 5
Arabidopsis_lyrata_   (Lyrate rockcress)   6
Arabidopsis_thaliana_10   (Thale cress)   9
Carica_papaya_   (Papaya)   4
Medicago_truncatula_   (Barrel medic)   26
Phaseolus_vulgaris_v186   (French bean)   10
Glycine_max_v109   (Soybean)   16
Cucumis_sativus_v122   (Cucumber)   11
Fragaria_vesca_   (Wild strawberry)   6
Malus_domestica_v196   (Apple)   28
Prunus_persica_v139   (Peach)   9
Linum_usitatissimum_v200   (Flax)   12
Manihot_esculenta_v147   (Cassava)   12
Populus_trichocarpa_v156   (Black cottonwood)   12
Vitis_vinifera_   (Wine grape)   5
Mimulus_guttatus_v140   (Spotted monkey flower)   9
Solanum_lycopersicum_v.2.3   (Tomato)   12
Solanum_tuberosum_   (Potato)   16
Actinidia_chinensis_Hongyang_ 18
Aquilegia_coerulea_v195 13
Triticum_urartu_22 7
Triticum_aestivum_22   (Bread wheat)   15
Aegilops_tauschii_22 8
Brachypodium_distachyon_   (Stiff brome)   8
Oryza_barthii_22   (African wild rice)   12
Oryza_meridionalis_22 13
Oryza_glumaepatula_22 10
Oryza_glaberrima   (African rice)   8
Oryza_punctata_22 12
Oryza_nivara_22 10
Oryza_brachyantha_22   (Malo sina)   7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   9
Oryza_sativa_v193   (Rice)   9
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   13
Panicum_virgatum_v202   (Switchgrass)   17
Setaria_italica_v164   (Foxtail millet)   13
Zea_mays_subsp._mays_   (Maize)   8
Zea_mays_v181   (Maize)   12
Sorghum_bicolor_   (Sorghum)   13
Musa_balbisiana   (Balbis banana)   16
Musa_acuminata_22   (Wild Malaysian banana)   14
Amborella_trichopoda_22 5
Physcomitrella_patens 3
Coccomyxa_subellipsoidea_sp._C-169_v2 3
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 4
Chlorella_vulgaris_ 4
Volvox_carteri_f._nagariensis_ 7
Volvox_carteri_v199 5
Chlamydomonas_reinhardtii_4.0 2
Ostreococcus_sp._RCC809_ 2
Ostreococcus_lucimarinus_CCE9901_ 2
Ostreococcus_tauri_ 1
Bathycoccus_prasinos_ 3
Micromonas_sp._RCC299_ 2
Micromonas_pusilla_CCMP1545_v3.0 4
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 3
Bigelowiella_natans_CCMP2755_22 6
Cyanophora_paradoxa_ 3
Leishmania_mexicana_2.4 4
Leishmania_major_strain_Friedlin_ 8
Leishmania_infantum_JPCM5_2.4 7
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 7
Trypanosoma_vivax_ 6
Trypanosoma_cruzi_strain_CL_Brener 10
Trypanosoma_congolense_2.4 11
Trypanosoma_brucei_gambiense_v4.1 10
Trypanosoma_brucei_TREU927_v4.1 10
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 1
Albugo_laibachii_22 5
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 4
Pythium_aphanidermatum_DAOM_BR444_22 4
Pythium_irregulare_DAOM_BR486_22 2
Pythium_vexans_DAOM_BR484_22 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3
Phytophthora_sojae_1.1 5
Phytophthora_infestans_T30-4_ 6
Phytophthora_capsici_ 3
Hyaloperonospora_arabidopsidis_22 4
Phaeodactylum_tricornutumCCAP_1055/1 1
Fragilariopsis_cylindrus 5
Thalassiosira_pseudonana_CCMP1335 3
Perkinsus_marinus_ATCC_50983_ 38
Paramecium_tetraurelia_ 14
Tetrahymena_thermophila_SB210_1_ 6
Ichthyophthirius_multifiliis_strain_G5_ 3
Cryptosporidium_hominis 1
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 4
Toxoplasma_gondii_VEG 6
Toxoplasma_gondii_ME49 5
Toxoplasma_gondii_GT1 5
Babesia_bovis_T2Bo_ 16
Theileria_parva__ 4
Theileria_annulata 4
Plasmodium_falciparum_3D7_ 3
Plasmodium_vivax_SaI-1_7.0 4
Plasmodium_knowlesi_strain_H_ 3
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 3
Plasmodium_berghei_ANKA_ 3
Symbiodinium_minutum_clade_B1_v1.2 27
Naegleria_gruberi_ 1
Trichomonas_vaginalis_ 2
Guillardia_theta_CCMP2712_v1.0_ 7
Emiliania_huxleyi_CCMP1516_ 9

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   19
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6
Cryptococcus_neoformans_var._grubii_H99_ 6
Cryptococcus_neoformans_B-3501A_ 6
Cryptococcus_neoformans_JEC21_ 6
Paracoccidioides_brasiliensis_Pb01_ 2
Paracoccidioides_brasiliensis_Pb03_ 3
Coccidioides_posadasii_str._Silveira_ 3
Coccidioides_immitis_RMSCC_3703_ 3
Coccidioides_immitis_RMSCC_2394_ 3
Coccidioides_immitis_H538.4_ 3
Ajellomyces_dermatitidis_ER-3_ 3
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 2
Histoplasma_capsulatum_G186AR 3
Aspergillus_fumigatus_A1163_ 3
Candida_albicans_WO-1_ 4
Saccharomyces_cerevisiae_UC5 2
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 1
Saccharomyces_cerevisiae_YJM269 2
Saccharomyces_cerevisiae_T7 2
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_Vin13 1
Saccharomyces_cerevisiae_LalvinQA23 1
Saccharomyces_cerevisiae_AWRI796 1
Saccharomyces_cerevisiae_Sigma1278b 2
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_AWRI1631 2
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 1
Saccharomyces_cerevisiae_CLIB215 2
Saccharomyces_cerevisiae_Y10 1
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_RM11-1a 2
Saccharomyces_cerevisiae_RM11-1a_ 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2
Schizosaccharomyces_pombe_972h-_ 1
Batrachochytrium_dendrobatidis_JEL423_ 4
Batrachochytrium_dendrobatidis_JAM81_ 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   10
Hordeum_vulgare_22   (Domesticated barley)   11
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8
Trypanosoma_brucei_Lister_427_v4.1 10
Neospora_caninum_Nc-Liverpool_6.2 4
Plasmodium_falciparum_HB3_ 3
Plasmodium_falciparum_Dd2_ 2

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3
Gorilla_gorilla_69_3.1   (Western gorilla)   4
Pongo_abelii_69_2   (Sumatran orangutan)   4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   3
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   6
Mus_musculus_69_38   (House mouse)   6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   4
Bos_taurus_69_3.1   (Cattle)   3
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   3
Felis_catus_69   (Domestic cat)   5
Equus_caballus_69_2   (Horse)   3
Myotis_lucifugus_69_2.0   (Little brown bat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   4
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   4
Petromyzon_marinus_69_7.0   (Sea lamprey)   4
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   4
Gadus_morhua_69_1   (Atlantic cod)   8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5
Takifugu_rubripes_69_4   (Torafugu)   5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5
Danio_rerio_69_9   (Zebrafish)   6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   5
Caenorhabditis_elegans_69_215   (Roundworm)   6
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2
Arabidopsis_thaliana_10   (Thale cress)   8

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   9
Homo_sapiens__(NCBI_version)   (Human)   4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6
Heliconius_numata__(Incomplete) 2
Loa_loa_v3.3_(Request)   (Eye worm)   10
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   9
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9
Moniliophthora_perniciosa_FA553__(Genome_survey) 1
Encephalitozoon_intestinalis__(endoparasite) 2
Encephalitozoon_cuniculi_(endoparasite) 2
Lotus_japonicus__(Early_assembly) 9
Malus_x_domestica_(Duplicate)   (Apple)   28
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 15
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   11
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   12
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
Protozoadb_2010_08_(Protozoadb) 117
STRING_v9.0.5_(STRING) 457
Uniprot_2018_03_genome 33775
NCBI_2017_08_genome 5668
UniProt__viral_sequences_(Viral) 3
TargetDB__(Targets) 28
Protein_Data_Bank_(all_PDB_sequenc) 0
NCBI_viral_sequences_(Viral) 10

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.