SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for 90229,54791,90229 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
54791 - Eukaryotic type KH-domain (KH-domain type I)
90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

60 sequences contain the 90229,54791,90229 domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Musa balbisiana: ITC1587_Bchr7_P20849

Zea mays v181: GRMZM2G151689_T02|PACid:20838282

Zea mays v181: GRMZM2G071034_T02|PACid:20843582

Zea mays v181: GRMZM2G110402_T01|PACid:20824507

Zea mays v181: GRMZM2G124476_T01|PACid:20874541

Zea mays subsp. mays : GRMZM2G151689_P04

Zea mays subsp. mays : GRMZM2G071034_P02

Zea mays subsp. mays : GRMZM2G110402_P01

Zea mays subsp. mays : GRMZM2G124476_P01

Setaria italica v164: Si023144m|PACid:19702175

Panicum virgatum v202: Pavirv00022890m|PACid:23769715

Panicum virgatum v202: Pavirv00036533m|PACid:23810530

Oryza sativa v193: LOC_Os02g10080.2|PACid:21924545

Oryza sativa v193: LOC_Os04g57010.2|PACid:21896032

Oryza sativa ssp. japonica 5.0: LOC_Os02g10080.2|13102.m01115|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g57010.2|13104.m05947|protein

Oryza brachyantha 22: OB02G16470.1

Aegilops tauschii 22: EMT17685

Aquilegia coerulea v195: Aquca_009_00034.3|PACid:22035106

Actinidia chinensis Hongyang : Achn123681

Actinidia chinensis Hongyang : Achn241461

Actinidia chinensis Hongyang : Achn304371

Actinidia chinensis Hongyang : Achn286831

Solanum tuberosum : PGSC0003DMP400011226

Solanum tuberosum : PGSC0003DMP400017334

Solanum tuberosum : PGSC0003DMP400020222

Solanum tuberosum : PGSC0003DMP400041615

Vitis vinifera : GSVIVT01025360001

Vitis vinifera : GSVIVT01033508001

Vitis vinifera : GSVIVT01001369001

Populus trichocarpa v156: POPTR_0006s20620.1|PACid:18213157

Malus domestica v196: MDP0000263392|PACid:22628738

Cucumis sativus v122: Cucsa.142970.2|PACid:16963715

Cucumis sativus v122: Cucsa.242740.2|PACid:16971210

Cucumis sativus v122: Cucsa.263980.2|PACid:16973255

Glycine max v109: Glyma03g30020.2|PACid:16252795

Glycine max v109: Glyma03g30030.2|PACid:16252797

Glycine max v109: Glyma19g32910.2|PACid:16313560

Phaseolus vulgaris v186: Phvulv091027246m|PACid:23540728

Phaseolus vulgaris v186: Phvulv091027247m|PACid:23540727

Medicago truncatula : Medtr1g053960.2

Medicago truncatula : Medtr7g093130.2

Arabidopsis thaliana 10: AT3G12130.1

Arabidopsis thaliana 10: AT5G06770.1

Arabidopsis lyrata : jgi|Araly1|317994|fgenesh1_pm.C_scaffold_3001010

Arabidopsis lyrata : jgi|Araly1|325295|fgenesh1_pm.C_scaffold_6000515

Capsella rubella v183: Carubv10014485m|PACid:20900649

Capsella rubella v183: Carubv10001844m|PACid:20910954

Brassica rapa Chiifu-401 1.2: Bra001436

Brassica rapa Chiifu-401 1.2: Bra034776

Thellungiella halophila v173: Thhalv10021405m|PACid:20182171

Citrus sinensis v154: orange1.1g027188m|PACid:18100665

Citrus sinensis v154: orange1.1g027432m|PACid:18117952

Citrus clementina v165: clementine0.9_020888m|PACid:19265656

Citrus clementina v165: clementine0.9_021111m|PACid:19267207

Citrus clementina v165: clementine0.9_021134m|PACid:19267209

Citrus clementina v165: clementine0.9_021142m|PACid:19267208

Gossypium raimondii v221: Gorai.002G224900.2|PACid:26791883

Gossypium raimondii v221: Gorai.001G072800.2|PACid:26819897

Eucalyptus grandis v201: Eucgr.K01835.2|PACid:23603334