SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 90229,90229,54791,90229 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
90229 - CCCH zinc finger
54791 - Eukaryotic type KH-domain (KH-domain type I)
90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

123 sequences contain the 90229,90229,54791,90229 domain architecture in all genomes.

Remove higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Ostreococcus lucimarinus CCE9901 : jgi|Ost9901_3|93911|ost_17_001_063

Physcomitrella patens: jgi|Phypa1_1|182782|estExt_gwp_gw1.C_590273

Amborella trichopoda 22: ERN09271

Amborella trichopoda 22: ERN11588

Musa acuminata 22: GSMUA_Achr1P19650_001

Musa acuminata 22: GSMUA_Achr7P20530_001

Musa acuminata 22: GSMUA_Achr7P06400_001

Sorghum bicolor : jgi|Sorbi1|5054839|Sb04g006450

Sorghum bicolor : jgi|Sorbi1|5058076|Sb06g032000

Zea mays v181: GRMZM2G124476_T02|PACid:20874540

Zea mays v181: GRMZM2G110402_T02|PACid:20824505

Zea mays v181: GRMZM2G110402_T03|PACid:20824506

Zea mays v181: GRMZM2G071034_T01|PACid:20843581

Zea mays v181: GRMZM2G151689_T03|PACid:20838281

Zea mays subsp. mays : GRMZM2G124476_P02

Zea mays subsp. mays : GRMZM2G110402_P02

Zea mays subsp. mays : GRMZM2G110402_P03

Zea mays subsp. mays : GRMZM2G071034_P01

Zea mays subsp. mays : GRMZM2G151689_P01

Setaria italica v164: Si022785m|PACid:19702174

Panicum virgatum v202: Pavirv00022889m|PACid:23769714

Panicum virgatum v202: Pavirv00032895m|PACid:23775152

Panicum virgatum v202: Pavirv00005871m|PACid:23799669

Panicum virgatum v202: Pavirv00036532m|PACid:23810529

Phyllostachys heterocyclavar. pubescens: PH01000178G1080

Phyllostachys heterocyclavar. pubescens: PH01001575G0100

Oryza sativa v193: LOC_Os02g10080.1|PACid:21924544

Oryza sativa v193: LOC_Os04g57010.1|PACid:21896031

Oryza sativa v193: LOC_Os06g41384.1|PACid:21930419

Oryza sativa v193: LOC_Os06g41384.2|PACid:21930420

Oryza sativa ssp. japonica 5.0: LOC_Os02g10080.1|13102.m01114|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g57010.1|13104.m05946|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g41384.1|13106.m04320|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g41384.2|13106.m10558|protein

Oryza brachyantha 22: OB04G35690.1

Oryza brachyantha 22: OB06G29030.1

Oryza nivara 22: ONIVA02G08800.1

Oryza nivara 22: ONIVA06G25000.1

Oryza nivara 22: ONIVA04G27230.2

Oryza punctata 22: OPUNC04G26220.1

Oryza punctata 22: OPUNC04G26220.2

Oryza punctata 22: OPUNC02G06300.1

Oryza punctata 22: OPUNC06G19180.1

Oryza glaberrima: ORGLA06G0175700.1

Oryza glaberrima: ORGLA04G0249800.1

Oryza glaberrima: ORGLA02G0067000.1

Oryza glumaepatula 22: OGLUM02G07170.1

Oryza meridionalis 22: OMERI04G23860.4

Oryza meridionalis 22: OMERI02G08140.1

Oryza meridionalis 22: OMERI01G30970.2

Oryza barthii 22: OBART02G07170.1

Brachypodium distachyon : EG:BRADI1G35920.1

Brachypodium distachyon : EG:BRADI3G06940.1

Brachypodium distachyon : EG:BRADI5G25340.1

Brachypodium distachyon : EG:BRADI3G06950.1

Aegilops tauschii 22: EMT06016

Aegilops tauschii 22: EMT10788

Triticum aestivum 22: Traes_2AL_D149074A3.1

Triticum aestivum 22: Traes_2BL_B304E8577.1

Triticum aestivum 22: Traes_6AS_70AD4B0D5.1

Triticum aestivum 22: Traes_7AL_DE759149B.1

Triticum aestivum 22: Traes_7BL_342CAC6CE.1

Triticum aestivum 22: Traes_7DL_BC8BA3B78.1

Triticum urartu 22: TRIUR3_18803-P1

Aquilegia coerulea v195: Aquca_014_00875.1|PACid:22027642

Aquilegia coerulea v195: Aquca_009_00034.1|PACid:22035104

Aquilegia coerulea v195: Aquca_009_00034.2|PACid:22035105

Solanum tuberosum : PGSC0003DMP400011227

Solanum tuberosum : PGSC0003DMP400017335

Solanum tuberosum : PGSC0003DMP400020221

Solanum tuberosum : PGSC0003DMP400041031

Solanum lycopersicum v.2.3: Solyc01g073940.2.1

Solanum lycopersicum v.2.3: Solyc10g080480.1.1

Solanum lycopersicum v.2.3: Solyc10g078750.1.1

Mimulus guttatus v140: mgv1a010945m|PACid:17682957

Mimulus guttatus v140: mgv1a011179m|PACid:17683682

Mimulus guttatus v140: mgv1a011108m|PACid:17682573

Populus trichocarpa v156: POPTR_0001s05070.1|PACid:18236319

Populus trichocarpa v156: POPTR_0016s04590.1|PACid:18250365

Populus trichocarpa v156: POPTR_0016s04690.1|PACid:18250536

Manihot esculenta v147: cassava4.1_013023m|PACid:17993727

Manihot esculenta v147: cassava4.1_012715m|PACid:17973402

Manihot esculenta v147: cassava4.1_012954m|PACid:17979910

Linum usitatissimum v200: Lus10016272|PACid:23142691

Linum usitatissimum v200: Lus10021043|PACid:23182370

Linum usitatissimum v200: Lus10004183|PACid:23153318

Prunus persica v139: ppa009199m|PACid:17647425

Prunus persica v139: ppa009316m|PACid:17667002

Malus domestica v196: MDP0000217837|PACid:22654922

Fragaria vesca : gene24425

Cucumis sativus v122: Cucsa.142970.1|PACid:16963714

Cucumis sativus v122: Cucsa.242740.1|PACid:16971209

Cucumis sativus v122: Cucsa.263980.1|PACid:16973254

Glycine max v109: Glyma20g39160.1|PACid:16318374

Glycine max v109: Glyma02g29360.1|PACid:16248780

Glycine max v109: Glyma03g30020.1|PACid:16252794

Glycine max v109: Glyma03g30030.1|PACid:16252796

Glycine max v109: Glyma10g44330.1|PACid:16282098

Glycine max v109: Glyma19g32910.1|PACid:16313559

Phaseolus vulgaris v186: Phvulv091027244m|PACid:23540726

Phaseolus vulgaris v186: Phvulv091027245m|PACid:23540725

Phaseolus vulgaris v186: Phvulv091009029m|PACid:23541023

Phaseolus vulgaris v186: Phvulv091021467m|PACid:23559726

Medicago truncatula : Medtr7g093130.1

Medicago truncatula : Medtr1g053960.1

Carica papaya : evm.TU.supercontig_235.4

Carica papaya : evm.TU.supercontig_235.5

Citrus sinensis v154: orange1.1g022221m|PACid:18100664

Citrus sinensis v154: orange1.1g022880m|PACid:18117949

Citrus sinensis v154: orange1.1g022898m|PACid:18117950

Citrus sinensis v154: orange1.1g022928m|PACid:18117951

Citrus clementina v165: clementine0.9_017038m|PACid:19265655

Citrus clementina v165: clementine0.9_017532m|PACid:19267206

Citrus clementina v165: clementine0.9_017568m|PACid:19267205

Citrus clementina v165: clementine0.9_017570m|PACid:19267204

Gossypium raimondii v221: Gorai.009G070300.2|PACid:26765757

Gossypium raimondii v221: Gorai.002G224900.1|PACid:26791882

Gossypium raimondii v221: Gorai.001G072800.1|PACid:26819896

Theobroma cacao B97-61/B2 v1: Tc05_g018850

Theobroma cacao B97-61/B2 v1: Tc01_g015320

Eucalyptus grandis v201: Eucgr.K01835.1|PACid:23603333

Eucalyptus grandis v201: Eucgr.B02591.1|PACid:23567782

Picea abies: MA_1151g0010