SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47095,_gap_,47095,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47095 - HMG-box
47095 - HMG-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

70 sequences contain the _gap_,47095,_gap_,47095,_gap_ domain architecture in all genomes.

Remove higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Symbiodinium minutum clade B1 v1.2: symbB.v1.2.034196.t1|scaffold4374.1|size40529|3

Symbiodinium minutum clade B1 v1.2: symbB.v1.2.010994.t1|scaffold725.1|size168906|20

Toxoplasma gondii GT1: gb|TGGT1_016760

Toxoplasma gondii ME49: gb|TGME49_003950

Toxoplasma gondii VEG: gb|TGVEG_045260

Neospora caninum: psu|NCLIV_021140

Phaeodactylum tricornutumCCAP 1055/1: jgi|Phatr2|44432|estExt_fgenesh1_pg.C_chr_40218

Thecamonas trahens ATCC 50062 : AMSG_03006T0

Chlorella variabilis sp. NC64A : jgi|ChlNC64A_1|145197|IGS.gm_9_00004

Physcomitrella patens: jgi|Phypa1_1|210318|estExt_Genewise1.C_610004

Musa balbisiana: ITC1587_Bchr10_P30199

Sorghum bicolor : jgi|Sorbi1|5037959|Sb04g009610

Zea mays v181: GRMZM2G060253_T01|PACid:20879923

Zea mays subsp. mays : GRMZM2G060253_P01

Setaria italica v164: Si017040m|PACid:19687060

Panicum virgatum v202: Pavirv00051188m|PACid:23798067

Panicum virgatum v202: Pavirv00053161m|PACid:23816637

Phyllostachys heterocyclavar. pubescens: PH01001955G0160

Oryza brachyantha 22: OB02G19930.1

Aquilegia coerulea v195: Aquca_013_00142.1|PACid:22060239

Solanum tuberosum : PGSC0003DMP400021765

Solanum lycopersicum v.2.3: Solyc08g082070.2.1

Populus trichocarpa v156: POPTR_0001s10410.1|PACid:18235028

Populus trichocarpa v156: POPTR_0003s13780.1|PACid:18216576

Manihot esculenta v147: cassava4.1_029090m|PACid:17971023

Linum usitatissimum v200: Lus10003904|PACid:23144347

Linum usitatissimum v200: Lus10001909|PACid:23157104

Linum usitatissimum v200: Lus10032379|PACid:23168660

Prunus persica v139: ppa004611m|PACid:17662000

Malus domestica v196: MDP0000268093|PACid:22677777

Fragaria vesca : gene32050

Cucumis sativus v122: Cucsa.107270.1|PACid:16959575

Glycine max v109: Glyma08g02550.1|PACid:16269709

Phaseolus vulgaris v186: Phvulv091020669m|PACid:23530718

Medicago truncatula : Medtr8g099305.1

Carica papaya : evm.TU.supercontig_122.37

Arabidopsis thaliana 10: AT4G23800.1

Arabidopsis thaliana 10: AT4G11080.1

Arabidopsis lyrata : jgi|Araly1|489947|fgenesh2_kg.6__3081__AT4G11080.1

Capsella rubella v183: Carubv10000930m|PACid:20909701

Brassica rapa Chiifu-401 1.2: Bra013731

Thellungiella halophila v173: Thhalv10028648m|PACid:20197553

Gossypium raimondii v221: Gorai.007G025500.1|PACid:26785779

Theobroma cacao B97-61/B2 v1: Tc03_g028600

Neurospora crassa OR74A : NCU00833T0

Neurospora tetrasperma : jgi|Neute1|161292|estExt_fgenesh1_pg.C_760012

Phanerochaete chrysosporium RP-78 2.1: jgi|Phchr1|1556|fgenesh1_pg.C_scaffold_2000534

Rhizomucor miehei CAU432 : RhzM08618

Strigamia maritima 22: SMAR006793-PA

Daphnia pulex : jgi|Dappu1|221844|estExt_fgenesh1_pg.C_60467

Daphnia pulex : jgi|Dappu1|303621|PASA_GEN_22100001

Aedes aegypti 55: AAEL007882-PB

Aedes aegypti 55: AAEL007882-PA

Drosophila suzukii: DS10_00004040

Adineta vaga: GSADVT00000496001

Oikopleura dioica: GSOIDT00005866001

Poecilia formosa 76: ENSPFOP00000010835

Takifugu rubripes 76_4: ENSTRUP00000023943

Pteropus vampyrus 76_1: ENSPVAP00000013055

Myotis lucifugus 76_2.0: ENSMLUP00000004375

Myotis lucifugus 76_2.0: ENSMLUP00000021894

Equus caballus 76_2: ENSECAP00000003819

Mus musculus 76_38: ENSMUSP00000096572

Mus musculus 76_38: ENSMUSP00000126540

Mus musculus 76_38: ENSMUSP00000129611

Physcomitrella patens subsp. patens 22: PP1S2_357V6.1

Physcomitrella patens subsp. patens 22: PP1S61_4V6.1

Physcomitrella patens subsp. patens 22: PP1S61_4V6.2

Macaca mulatta 76_1: ENSMMUP00000013370

Pongo abelii 76_2: ENSPPYP00000004303