SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,53098,_gap_,54928,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53098 - Ribonuclease H-like
54928 - RNA-binding domain, RBD

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

53 sequences contain the _gap_,53098,_gap_,54928,_gap_ domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Arabidopsis lyrata : jgi|Araly1|919985|scaffold_803385.1

Oreochromis niloticus 76_1.0: ENSONIP00000000187

Xenopus tropicalis 76_4.2: ENSXETP00000036499

Anolis carolinensis 76_2.0: ENSACAP00000009591

Ficedula albicollis 76_1.0: ENSFALP00000014638

Gallus gallus 76_4: ENSGALP00000003498

Meleagris gallopavo 76_2: ENSMGAP00000010772

Monodelphis domestica 76_5: ENSMODP00000008758

Sarcophilus harrisii 76_7.0: ENSSHAP00000005780

Sarcophilus harrisii 76_7.0: ENSSHAP00000005781

Macropus eugenii 76_1.0: ENSMEUP00000013966

Loxodonta africana 76_3: ENSLAFP00000005166

Procavia capensis 76_1: ENSPCAP00000005878

Erinaceus europaeus 76: ENSEEUP00000003275

Pteropus vampyrus 76_1: ENSPVAP00000003111

Equus caballus 76_2: ENSECAP00000016464

Canis familiaris 76_3.1: ENSCAFP00000026476

Canis familiaris 76_3.1: ENSCAFP00000026479

Ailuropoda melanoleuca 76_1: ENSAMEP00000006537

Mustela putorius furo 76_1.0: ENSMPUP00000013540

Tursiops truncatus 76_1: ENSTTRP00000015583

Vicugna pacos 76_1: ENSVPAP00000003202

Ovis aries 76_3.1: ENSOARP00000014370

Ovis aries 76_3.1: ENSOARP00000014372

Bos taurus 76_3.1: ENSBTAP00000008458

Sus scrofa 76_10.2: ENSSSCP00000008384

Ochotona princeps 76: ENSOPRP00000010408

Oryctolagus cuniculus 76_2: ENSOCUP00000008536

Cavia porcellus 76_3: ENSCPOP00000008033

Heterocephalus glaber v1.7-2: HGL_M00000102130

Ictidomys tridecemlineatus 76_2: ENSSTOP00000018649

Ictidomys tridecemlineatus 76_2: ENSSTOP00000009787

Ictidomys tridecemlineatus 76_2: ENSSTOP00000006323

Mus musculus 76_38: ENSMUSP00000102130

Rattus norvegicus 76_5.0: ENSRNOP00000019654

Microcebus murinus 76_1: ENSMICP00000013599

Otolemur garnettii 76_3: ENSOGAP00000010350

Callithrix jacchus 76_3.2.1: ENSCJAP00000017186

Callithrix jacchus 76_3.2.1: ENSCJAP00000017194

Callithrix jacchus 76_3.2.1: ENSCJAP00000017190

Macaca mulatta 76_1: ENSMMUP00000022015

Macaca mulatta 76_1: ENSMMUP00000022016

Macaca mulatta 76_1: ENSMMUP00000032573

Macaca mulatta 76_1: ENSMMUP00000022017

Papio anubis 76: ENSPANP00000012337

Nomascus leucogenys 76_1.0: ENSNLEP00000014991

Pongo abelii 76_2: ENSPPYP00000008100

Gorilla gorilla 76_3.1: ENSGGOP00000016895

Gorilla gorilla 76_3.1: ENSGGOP00000004457

Pan troglodytes 76_2.1.4: ENSPTRP00000013399

Homo sapiens 76_38: ENSP00000261377

Homo sapiens 76_38: ENSP00000457616

Homo sapiens 76_38: ENSP00000261378