SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57756,50630,56672,53098,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
50630 - Acid proteases
56672 - DNA/RNA polymerases
53098 - Ribonuclease H-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

239 sequences contain the _gap_,57756,50630,56672,53098,_gap_ domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Perkinsus marinus ATCC 50983 : gi|294911833|ref|XP_002778076.1|

Phytophthora sojae 1.1: jgi|Physo1_1|139824|estExt_fgenesh1_pg.C_790003

Phytophthora sojae 1.1: jgi|Physo1_1|141292|estExt_fgenesh1_pg.C_960056

Sorghum bicolor : jgi|Sorbi1|5043453|Sb07g011900

Oryza sativa v193: LOC_Os03g44360.1|PACid:21911802

Oryza sativa v193: LOC_Os03g39330.1|PACid:21912613

Oryza sativa v193: LOC_Os03g23200.1|PACid:21911324

Oryza sativa v193: LOC_Os12g43050.1|PACid:21937456

Oryza sativa v193: LOC_Os12g40030.1|PACid:21936179

Oryza sativa v193: LOC_Os12g35130.1|PACid:21935194

Oryza sativa v193: LOC_Os12g33910.1|PACid:21937067

Oryza sativa v193: LOC_Os12g04830.1|PACid:21934381

Oryza sativa v193: LOC_Os11g10900.1|PACid:21946559

Oryza sativa v193: LOC_Os11g22540.1|PACid:21945039

Oryza sativa v193: LOC_Os11g24000.1|PACid:21948504

Oryza sativa v193: LOC_Os11g24012.1|PACid:21944614

Oryza sativa v193: LOC_Os11g14580.1|PACid:21948132

Oryza sativa v193: LOC_Os11g14650.1|PACid:21948323

Oryza sativa v193: LOC_Os11g24270.1|PACid:21948541

Oryza sativa v193: LOC_Os05g17470.1|PACid:21941731

Oryza sativa v193: LOC_Os05g15030.1|PACid:21941599

Oryza sativa v193: LOC_Os05g19560.1|PACid:21940223

Oryza sativa v193: LOC_Os04g01030.1|PACid:21893696

Oryza sativa v193: LOC_Os04g26660.1|PACid:21895574

Oryza sativa v193: LOC_Os08g20770.1|PACid:21889752

Oryza sativa v193: LOC_Os10g10920.1|PACid:21885149

Oryza sativa v193: LOC_Os04g38180.1|PACid:21893098

Oryza sativa v193: LOC_Os04g12310.1|PACid:21896553

Oryza sativa v193: LOC_Os04g06130.1|PACid:21893856

Oryza sativa v193: LOC_Os04g06110.1|PACid:21893604

Oryza sativa v193: LOC_Os04g45400.1|PACid:21895621

Oryza sativa v193: LOC_Os04g03110.1|PACid:21896953

Oryza sativa v193: LOC_Os03g45550.1|PACid:21913046

Oryza sativa v193: LOC_Os03g48990.1|PACid:21913740

Oryza sativa v193: LOC_Os10g25720.1|PACid:21885423

Oryza sativa v193: LOC_Os10g06830.1|PACid:21883373

Oryza sativa v193: LOC_Os01g63120.1|PACid:21909938

Oryza sativa v193: LOC_Os02g02060.1|PACid:21921874

Oryza sativa v193: LOC_Os02g28010.1|PACid:21918202

Oryza sativa v193: LOC_Os02g46240.1|PACid:21921130

Oryza sativa v193: LOC_Os05g17830.1|PACid:21941262

Oryza sativa v193: LOC_Os05g18340.1|PACid:21943219

Oryza sativa v193: LOC_Os05g24680.1|PACid:21938937

Oryza sativa v193: LOC_Os05g35390.1|PACid:21942350

Oryza sativa v193: LOC_Os06g32490.1|PACid:21933143

Oryza sativa v193: LOC_Os06g36540.1|PACid:21931050

Oryza sativa v193: LOC_Os07g13420.1|PACid:21900682

Oryza sativa v193: LOC_Os07g16240.1|PACid:21900355

Oryza sativa v193: LOC_Os07g20460.1|PACid:21899741

Oryza sativa v193: LOC_Os07g28200.1|PACid:21897726

Oryza sativa v193: LOC_Os08g08550.1|PACid:21889142

Oryza sativa v193: LOC_Os08g11800.1|PACid:21888669

Oryza sativa v193: LOC_Os08g12080.1|PACid:21890729

Oryza sativa v193: LOC_Os08g12210.1|PACid:21887604

Oryza sativa v193: LOC_Os08g20170.1|PACid:21889762

Oryza sativa v193: LOC_Os08g21280.1|PACid:21889336

Oryza sativa v193: LOC_Os09g02110.1|PACid:21925110

Oryza sativa v193: LOC_Os09g09400.1|PACid:21927263

Oryza sativa v193: LOC_Os09g12890.1|PACid:21926594

Oryza sativa v193: LOC_Os10g06520.1|PACid:21883763

Oryza sativa v193: LOC_Os04g14890.1|PACid:21893585

Oryza sativa v193: LOC_Os07g28510.1|PACid:21898220

Oryza sativa v193: LOC_Os07g16000.1|PACid:21900695

Oryza sativa v193: LOC_Os02g47690.1|PACid:21924071

Oryza sativa v193: LOC_Os09g03420.1|PACid:21927394

Oryza sativa v193: LOC_Os12g04810.1|PACid:21938617

Oryza sativa v193: LOC_Os11g39790.1|PACid:21946727

Oryza sativa ssp. japonica 5.0: LOC_Os03g44360.1|13103.m04774|protein

Oryza sativa ssp. japonica 5.0: LOC_Os03g39330.1|13103.m04263|protein

Oryza sativa ssp. japonica 5.0: LOC_Os03g23200.1|13103.m02802|protein

Oryza sativa ssp. japonica 5.0: LOC_Os12g43050.1|13112.m04540|protein

Oryza sativa ssp. japonica 5.0: LOC_Os12g40030.1|13112.m04161|protein

Oryza sativa ssp. japonica 5.0: LOC_Os12g35130.1|13112.m03594|protein

Oryza sativa ssp. japonica 5.0: LOC_Os12g33910.1|13112.m03457|protein

Oryza sativa ssp. japonica 5.0: LOC_Os12g04830.1|13112.m00469|protein

Oryza sativa ssp. japonica 5.0: LOC_Os12g04810.1|13112.m00467|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g39790.1|13111.m03932|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g10900.1|13111.m01155|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g22540.1|13111.m02179|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g24000.1|13111.m02284|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g24012.1|13111.m02286|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g14580.1|13111.m01501|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g14650.1|13111.m01508|protein

Oryza sativa ssp. japonica 5.0: LOC_Os11g24270.1|13111.m02313|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g17480.1|13105.m01843|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g17470.1|13105.m01842|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g15030.1|13105.m01578|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g19560.1|13105.m02069|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g01030.1|13104.m00003|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g26660.1|13104.m02524|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g20770.1|13108.m02157|protein

Oryza sativa ssp. japonica 5.0: LOC_Os10g10920.1|13110.m00986|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g38180.1|13104.m03661|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g12310.1|13104.m01129|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g06130.1|13104.m00534|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g06110.1|13104.m00532|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g45400.1|13104.m04554|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g03110.1|13104.m00234|protein

Oryza sativa ssp. japonica 5.0: LOC_Os03g45550.1|13103.m04903|protein

Oryza sativa ssp. japonica 5.0: LOC_Os03g48990.1|13103.m05299|protein

Oryza sativa ssp. japonica 5.0: LOC_Os10g25720.1|13110.m02173|protein

Oryza sativa ssp. japonica 5.0: LOC_Os10g06520.1|13110.m00574|protein

Oryza sativa ssp. japonica 5.0: LOC_Os10g06830.1|13110.m00607|protein

Oryza sativa ssp. japonica 5.0: LOC_Os01g63120.1|13101.m06770|protein

Oryza sativa ssp. japonica 5.0: LOC_Os02g02060.1|13102.m00140|protein

Oryza sativa ssp. japonica 5.0: LOC_Os02g28010.1|13102.m03056|protein

Oryza sativa ssp. japonica 5.0: LOC_Os02g46240.1|13102.m05187|protein

Oryza sativa ssp. japonica 5.0: LOC_Os02g47690.1|13102.m05379|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g14890.1|13104.m01382|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g17830.1|13105.m01882|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g18340.1|13105.m01936|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g24680.1|13105.m02524|protein

Oryza sativa ssp. japonica 5.0: LOC_Os05g35390.1|13105.m03705|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g32490.1|13106.m03355|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g36540.1|13106.m03780|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g13420.1|13107.m01394|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g16000.1|13107.m01675|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g16240.1|13107.m01696|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g20460.1|13107.m02085|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g28200.1|13107.m02819|protein

Oryza sativa ssp. japonica 5.0: LOC_Os07g28510.1|13107.m02856|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g08550.1|13108.m00887|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g11800.1|13108.m01259|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g12080.1|13108.m01287|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g12210.1|13108.m01300|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g20170.1|13108.m02103|protein

Oryza sativa ssp. japonica 5.0: LOC_Os08g21280.1|13108.m02195|protein

Oryza sativa ssp. japonica 5.0: LOC_Os09g02110.1|13109.m00126|protein

Oryza sativa ssp. japonica 5.0: LOC_Os09g03420.1|13109.m00263|protein

Oryza sativa ssp. japonica 5.0: LOC_Os09g09400.1|13109.m00806|protein

Oryza sativa ssp. japonica 5.0: LOC_Os09g12890.1|13109.m01179|protein

Prunus persica v139: ppa024499m|PACid:17645985

Glycine max v109: Glyma04g32860.1|PACid:16256567

Glycine max v109: Glyma01g26610.1|PACid:16244502

Glycine max v109: Glyma18g33480.1|PACid:16309520

Theobroma cacao B97-61/B2 v1: Tc00_g096820

Theobroma cacao B97-61/B2 v1: Tc03_g009491

Theobroma cacao B97-61/B2 v1: Tc00_g008882

Theobroma cacao B97-61/B2 v1: Tc00_g035243

Theobroma cacao B97-61/B2 v1: Tc00_g064901

Theobroma cacao B97-61/B2 v1: Tc00_g087851

Theobroma cacao B97-61/B2 v1: Tc05_g011660

Theobroma cacao B97-61/B2 v1: Tc00_g037240

Theobroma cacao B97-61/B2 v1: Tc00_g063600

Theobroma cacao B97-61/B2 v1: Tc00_g091660

Saccharomyces cerevisiae 76: YGR109W-B

Saccharomyces cerevisiae 76: YIL082W-A

Yarrowia lipolytica CLIB122: gnl|GLV|YALI0E14388g2

Rhizopus oryzae RA 99-880 : RO3T_02694

Rhizopus oryzae RA 99-880 : RO3T_03549

Rhizopus oryzae RA 99-880 : RO3T_09174

Amphimedon queenslandica: Aqu1.209265|PACid:15707793

Amphimedon queenslandica: Aqu1.211317|PACid:15709845

Hydra vulgaris: gi|449691645|ref|XP_004212749.1|

Thelohanellus kitauei: KII64914

Thelohanellus kitauei: KII68637

Thelohanellus kitauei: KII74908

Thelohanellus kitauei: KII72683

Thelohanellus kitauei: KII71437

Thelohanellus kitauei: KII65574

Thelohanellus kitauei: KII64453

Thelohanellus kitauei: KII75178

Thelohanellus kitauei: KII63833

Thelohanellus kitauei: KII61761

Thelohanellus kitauei: KII65330

Thelohanellus kitauei: KII72917

Thelohanellus kitauei: KII65851

Thelohanellus kitauei: KII61633

Thelohanellus kitauei: KII66374

Thelohanellus kitauei: KII65807

Thelohanellus kitauei: KII71730

Thelohanellus kitauei: KII72556

Thelohanellus kitauei: KII71590

Thelohanellus kitauei: KII68010

Thelohanellus kitauei: KII64432

Thelohanellus kitauei: KII70617

Thelohanellus kitauei: KII74689

Thelohanellus kitauei: KII67125

Thelohanellus kitauei: KII74379

Thelohanellus kitauei: KII63648

Thelohanellus kitauei: KII65000

Mnemiopsis leidyi: ML086624a-PA

Mnemiopsis leidyi: ML279834a-PA

Trichinella spiralis 22: EFV61764

Trichinella spiralis 22: EFV50174

Caenorhabditis briggsae 2: CBG27228

Caenorhabditis briggsae 2: CBG28064

Caenorhabditis remanei : CRE03461

Caenorhabditis remanei : CRE06930

Caenorhabditis remanei : CRE08209

Caenorhabditis remanei : CRE08564

Caenorhabditis remanei : CRE09882

Caenorhabditis remanei : CRE17270

Caenorhabditis remanei : CRE19532

Caenorhabditis remanei : CRE20460

Caenorhabditis remanei : CRE22308

Caenorhabditis remanei : CRE22508

Caenorhabditis remanei : CRE22890

Caenorhabditis remanei : CRE22892

Caenorhabditis remanei : CRE27751

Caenorhabditis remanei : CRE29108

Caenorhabditis remanei : CRE31410

Caenorhabditis brenneri : CBN09057

Caenorhabditis brenneri : CBN12673

Caenorhabditis brenneri : CBN25839

Caenorhabditis brenneri : CBN30260

Caenorhabditis japonica : CJA16826

Caenorhabditis japonica : CJA29202

Pristionchus pacificus : PPA01551

Acyrthosiphon pisum : gi|193610973|ref|XP_001948286.1|

Acyrthosiphon pisum : gi|193674076|ref|XP_001951550.1|

Acyrthosiphon pisum : gi|193620105|ref|XP_001947728.1|

Acyrthosiphon pisum : gi|193617629|ref|XP_001951773.1|

Acyrthosiphon pisum : gi|193622546|ref|XP_001949653.1|

Acyrthosiphon pisum : gi|193587003|ref|XP_001951804.1|

Tribolium castaneum 3.0: TC007552

Tribolium castaneum 3.0: TC007546

Tribolium castaneum 3.0: TC007542

Tribolium castaneum 3.0: TC000071

Tribolium castaneum 3.0: TC009400

Tribolium castaneum 3.0: TC004277

Tribolium castaneum 3.0: TC006870

Tribolium castaneum 3.0: TC001808

Tribolium castaneum 3.0: TC004276

Tribolium castaneum 3.0: TC012975

Tribolium castaneum 3.0: TC001809

Bombyx mori : Bmb003743

Bombyx mori : Bmb004175

Bombyx mori : Bmb020525

Strongylocentrotus purpuratus v3.1: SPU_000714

Strongylocentrotus purpuratus v3.1: SPU_000715

Strongylocentrotus purpuratus v3.1: SPU_003095

Strongylocentrotus purpuratus v3.1: SPU_006836

Strongylocentrotus purpuratus v3.1: SPU_008423

Strongylocentrotus purpuratus v3.1: SPU_012595

Strongylocentrotus purpuratus v3.1: SPU_014716

Strongylocentrotus purpuratus v3.1: SPU_016982

Strongylocentrotus purpuratus v3.1: SPU_018602

Strongylocentrotus purpuratus v3.1: SPU_027665