SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,57756,57850,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

57756 - Retrovirus zinc finger-like domains
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

50 sequences contain the _gap_,57756,57850,_gap_ domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Phytophthora sojae 1.1: jgi|Physo1_1|131714|estExt_fgenesh1_pg.C_170056

Pythium iwayamai DAOM BR242034 22: EPrPW00000023179

Bigelowiella natans CCMP2755 22: JGI_V11_66132

Sorghum bicolor : jgi|Sorbi1|5048438|Sb01g012830

Zea mays v181: AY542798.1_FGT003|PACid:20866583

Zea mays subsp. mays : AY542798.1_FGP003

Setaria italica v164: Si004332m|PACid:19678088

Setaria italica v164: Si034539m|PACid:19684559

Setaria italica v164: Si005205m|PACid:19674981

Panicum virgatum v202: Pavirv00050335m|PACid:23763913

Panicum virgatum v202: Pavirv00069649m|PACid:23788497

Panicum virgatum v202: Pavirv00068810m|PACid:23801023

Panicum virgatum v202: Pavirv00038525m|PACid:23824018

Oryza sativa v193: LOC_Os03g45730.1|PACid:21915357

Oryza sativa ssp. japonica 5.0: LOC_Os03g45730.1|13103.m04916|protein

Oryza brachyantha 22: OB03G35920.1

Oryza nivara 22: ONIVA01G08440.1

Oryza punctata 22: OPUNC10G09310.1

Oryza punctata 22: OPUNC10G09310.2

Oryza glumaepatula 22: OGLUM10G10660.1

Oryza meridionalis 22: OMERI10G07820.1

Oryza barthii 22: OBART10G10830.1

Brachypodium distachyon : EG:BRADI1G13180.1

Aegilops tauschii 22: EMT02426

Triticum aestivum 22: Traes_4DS_1BF774332.1

Triticum aestivum 22: Traes_4AL_0021A0CA6.1

Triticum aestivum 22: Traes_4BS_EC135C403.1

Triticum urartu 22: TRIUR3_13882-P1

Solanum lycopersicum v.2.3: Solyc01g110950.2.1

Rhizomucor miehei CAU432 : RhzM08836

Mucor circinelloides : jgi|Mucci1|91735|estExt_fgeneshMC_pg.C_40705

Rhizopus oryzae RA 99-880 : RO3T_03631

Phycomyces blakesleeanus : jgi|Phybl1|59713|fgeneshPB_pg.2__433

Thelohanellus kitauei: KII69485

Brugia malayi WS250: Bm3871

Onchocerca volvulus 22: OVOC62

Anopheles gambiae 49_3j: AGAP011217-PA

Anopheles darlingi 22: ADAR001391-PA

Culex pipiens quinquefasciatus : CPIJ008053|conserved

Drosophila ananassae 1.3: FBpp0114563

Drosophila erecta 1.3: FBpp0141486

Drosophila melanogaster 76_5: FBpp0072158

Drosophila melanogaster 76_5: FBpp0298003

Drosophila sechellia 1.3: FBpp0199783

Drosophila yakuba 1.3: FBpp0259388

Drosophila suzukii: DS10_00002288

Drosophila persimilis 1.3: FBpp0175773

Drosophila pseudoobscura 2.13: FBpp0277878

Drosophila willistoni 1.3: FBpp0251062

Lucilia cuprina: KNC32116