SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,81383,52047,52047 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain
52047 - RNI-like
52047 - RNI-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

213 sequences contain the _gap_,81383,52047,52047 domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Ralstonia solanacearum CFBP2957: gi|300704274|ref|YP_003745877.1|

Candidatus Protochlamydia amoebophila UWE25: gi|46447450|ref|YP_008815.1|

Candidatus Amoebophilus asiaticus 5a2: gi|294661100|ref|YP_003572975.1|

Candidatus Amoebophilus asiaticus 5a2: gi|189501572|ref|YP_001957289.1|

Candidatus Amoebophilus asiaticus 5a2: gi|189502739|ref|YP_001958456.1|

Naegleria gruberi : jgi|Naegr1|78765|estExt_fgeneshNG_pg.C_100025

Naegleria gruberi : jgi|Naegr1|47566|fgeneshHS_pg.scaffold_13000066

Asterochloris sp. Cgr/DA1pho v1.0: jgi|Astpho1|37197|fgenesh1_pg.00038_#_102

Amborella trichopoda 22: ERN03740

Amborella trichopoda 22: ERN10756

Musa acuminata 22: GSMUA_Achr10P26950_001

Musa acuminata 22: GSMUA_Achr10P29380_001

Musa acuminata 22: GSMUA_Achr2P15920_001

Musa acuminata 22: GSMUA_Achr4P30680_001

Musa acuminata 22: GSMUA_Achr6P05220_001

Musa acuminata 22: GSMUA_Achr9P28510_001

Musa balbisiana: ITC1587_Bchr10_P31255

Musa balbisiana: ITC1587_Bchr2_P04496

Musa balbisiana: ITC1587_Bchr4_P11430

Musa balbisiana: ITC1587_Bchr6_P15244

Musa balbisiana: ITC1587_Bchr9_P28136

Musa balbisiana: ITC1587_BchrUn_random_P35604

Zea mays v181: GRMZM2G069649_T01|PACid:20879896

Zea mays v181: GRMZM2G481452_T01|PACid:20856798

Zea mays subsp. mays : GRMZM2G069649_P01

Panicum virgatum v202: Pavirv00051244m|PACid:23775008

Panicum virgatum v202: Pavirv00057249m|PACid:23781637

Oryza sativa v193: LOC_Os06g40360.1|PACid:21930691

Oryza sativa v193: LOC_Os06g40360.2|PACid:21930692

Oryza sativa v193: LOC_Os02g10700.1|PACid:21920469

Oryza sativa ssp. japonica 5.0: LOC_Os06g40360.1|13106.m04195|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g40360.2|13106.m04194|protein

Oryza sativa ssp. japonica 5.0: LOC_Os02g10700.1|13102.m01194|protein

Oryza nivara 22: ONIVA06G24240.1

Oryza nivara 22: ONIVA04G08790.1

Oryza nivara 22: ONIVA02G09210.1

Oryza glaberrima: ORGLA06G0169000.1

Oryza glaberrima: ORGLA02G0072400.1

Oryza glumaepatula 22: OGLUM06G21540.1

Oryza glumaepatula 22: OGLUM04G10610.1

Oryza glumaepatula 22: OGLUM02G07760.1

Oryza meridionalis 22: OMERI06G19510.1

Oryza meridionalis 22: OMERI02G08630.1

Oryza barthii 22: OBART06G20460.1

Oryza barthii 22: OBART04G10950.1

Oryza barthii 22: OBART02G07700.1

Brachypodium distachyon : EG:BRADI1G36530.1

Aegilops tauschii 22: EMT19526

Triticum aestivum 22: Traes_3B_D8B3F965A.1

Aquilegia coerulea v195: Aquca_006_00010.1|PACid:22036459

Aquilegia coerulea v195: Aquca_035_00174.1|PACid:22061312

Aquilegia coerulea v195: Aquca_035_00174.2|PACid:22061313

Aquilegia coerulea v195: Aquca_035_00174.3|PACid:22061314

Aquilegia coerulea v195: Aquca_035_00174.4|PACid:22061315

Actinidia chinensis Hongyang : Achn159941

Actinidia chinensis Hongyang : Achn285111

Actinidia chinensis Hongyang : Achn195831

Actinidia chinensis Hongyang : Achn164551

Solanum tuberosum : PGSC0003DMP400000237

Solanum tuberosum : PGSC0003DMP400005245

Solanum tuberosum : PGSC0003DMP400027783

Solanum tuberosum : PGSC0003DMP400053878

Solanum lycopersicum v.2.3: Solyc12g009560.1.1

Solanum lycopersicum v.2.3: Solyc08g060810.2.1

Solanum lycopersicum v.2.3: Solyc03g093310.2.1

Solanum lycopersicum v.2.3: Solyc07g008250.2.1

Solanum lycopersicum v.2.3: Solyc01g095800.2.1

Solanum lycopersicum v.2.3: Solyc07g054610.2.1

Solanum lycopersicum v.2.3: Solyc08g068520.2.1

Mimulus guttatus v140: mgv1a002548m|PACid:17677484

Mimulus guttatus v140: mgv1a002803m|PACid:17684973

Mimulus guttatus v140: mgv1a004559m|PACid:17684224

Mimulus guttatus v140: mgv1a002758m|PACid:17692276

Vitis vinifera : GSVIVT01000724001

Vitis vinifera : GSVIVT01035856001

Vitis vinifera : GSVIVT01014046001

Populus trichocarpa v156: POPTR_0018s13070.1|PACid:18215307

Populus trichocarpa v156: POPTR_0006s06770.1|PACid:18211089

Populus trichocarpa v156: POPTR_0006s27020.1|PACid:18212950

Populus trichocarpa v156: POPTR_0018s01710.1|PACid:18214550

Manihot esculenta v147: cassava4.1_003246m|PACid:17984853

Manihot esculenta v147: cassava4.1_006314m|PACid:17964536

Manihot esculenta v147: cassava4.1_006356m|PACid:17985270

Manihot esculenta v147: cassava4.1_003247m|PACid:17972896

Linum usitatissimum v200: Lus10027218|PACid:23145389

Linum usitatissimum v200: Lus10027217|PACid:23145525

Linum usitatissimum v200: Lus10002913|PACid:23148594

Linum usitatissimum v200: Lus10031164|PACid:23150981

Linum usitatissimum v200: Lus10031165|PACid:23150982

Linum usitatissimum v200: Lus10002014|PACid:23166986

Linum usitatissimum v200: Lus10030102|PACid:23172630

Linum usitatissimum v200: Lus10031742|PACid:23180669

Linum usitatissimum v200: Lus10002165|PACid:23180826

Prunus persica v139: ppa021302m|PACid:17657824

Malus domestica v196: MDP0000165656|PACid:22651753

Malus domestica v196: MDP0000235119|PACid:22657748

Malus domestica v196: MDP0000257953|PACid:22683199

Malus domestica v196: MDP0000891985|PACid:22624726

Malus domestica v196: MDP0000176755|PACid:22638348

Malus domestica v196: MDP0000230402|PACid:22672619

Fragaria vesca : gene21200

Fragaria vesca : gene31045

Cucumis sativus v122: Cucsa.132140.1|PACid:16962501

Cucumis sativus v122: Cucsa.162460.1|PACid:16965679

Cucumis sativus v122: Cucsa.162460.2|PACid:16965680

Cucumis sativus v122: Cucsa.310350.1|PACid:16976520

Glycine max v109: Glyma04g05850.2|PACid:16255002

Glycine max v109: Glyma04g07110.1|PACid:16255142

Glycine max v109: Glyma04g20330.1|PACid:16256166

Glycine max v109: Glyma06g07200.1|PACid:16262025

Glycine max v109: Glyma13g23510.1|PACid:16291304

Glycine max v109: Glyma14g14410.1|PACid:16295455

Glycine max v109: Glyma17g12270.1|PACid:16305312

Glycine max v109: Glyma17g31940.1|PACid:16306763

Phaseolus vulgaris v186: Phvulv091016479m|PACid:23539176

Phaseolus vulgaris v186: Phvulv091025434m|PACid:23557048

Phaseolus vulgaris v186: Phvulv091031303m|PACid:23557581

Phaseolus vulgaris v186: Phvulv091029427m|PACid:23561616

Medicago truncatula : Medtr1g012520.1

Medicago truncatula : Medtr3g107280.1

Medicago truncatula : Medtr3g408430.1

Medicago truncatula : Medtr4g036815.1

Medicago truncatula : Medtr4g114640.1

Carica papaya : evm.TU.supercontig_46.8

Carica papaya : evm.TU.supercontig_750.1

Arabidopsis thaliana 10: AT2G25490.1

Arabidopsis thaliana 10: AT5G25350.1

Arabidopsis thaliana 10: AT5G07670.1

Arabidopsis thaliana 10: AT3G54650.1

Arabidopsis lyrata : jgi|Araly1|481400|fgenesh2_kg.4__460__AT2G25490.1

Arabidopsis lyrata : jgi|Araly1|485869|fgenesh2_kg.5__1861__AT3G54650.1

Arabidopsis lyrata : jgi|Araly1|489386|fgenesh2_kg.6__2520__AT5G25350.1

Capsella rubella v183: Carubv10022822m|PACid:20902394

Capsella rubella v183: Carubv10000859m|PACid:20907369

Capsella rubella v183: Carubv10000473m|PACid:20911144

Brassica rapa Chiifu-401 1.2: Bra009835

Brassica rapa Chiifu-401 1.2: Bra034254

Brassica rapa Chiifu-401 1.2: Bra036542

Thellungiella halophila v173: Thhalv10003828m|PACid:20198978

Thellungiella halophila v173: Thhalv10010227m|PACid:20207246

Thellungiella halophila v173: Thhalv10000087m|PACid:20208893

Citrus sinensis v154: orange1.1g011541m|PACid:18108901

Citrus sinensis v154: orange1.1g006426m|PACid:18113347

Citrus clementina v165: clementine0.9_004684m|PACid:19257003

Citrus clementina v165: clementine0.9_008856m|PACid:19275556

Gossypium raimondii v221: Gorai.010G114900.1|PACid:26759902

Gossypium raimondii v221: Gorai.010G114900.2|PACid:26759903

Gossypium raimondii v221: Gorai.009G058000.1|PACid:26763074

Gossypium raimondii v221: Gorai.009G017100.1|PACid:26764419

Gossypium raimondii v221: Gorai.013G215000.1|PACid:26787404

Gossypium raimondii v221: Gorai.003G113000.1|PACid:26799627

Gossypium raimondii v221: Gorai.008G107000.1|PACid:26819234

Gossypium raimondii v221: Gorai.001G042600.1|PACid:26822226

Gossypium raimondii v221: Gorai.001G042600.2|PACid:26822225

Theobroma cacao B97-61/B2 v1: Tc03_g017090

Eucalyptus grandis v201: Eucgr.C01334.1|PACid:23570909

Eucalyptus grandis v201: Eucgr.C01524.1|PACid:23571075

Eucalyptus grandis v201: Eucgr.C02778.1|PACid:23572238

Eucalyptus grandis v201: Eucgr.A02899.1|PACid:23564906

Pinus taeda: PITA_000021074-RA

Selaginella moellendorffii : jgi|Selmo1|442539|estExt_fgenesh2_pg.C_250120

Selaginella moellendorffii : jgi|Selmo1|123441|e_gw1.71.40.1

Dictyostelium purpureum : jgi|Dicpu1|96758|estExt_fgeneshDP_pg.C_270032

Spizellomyces punctatus DAOM BR117 : SPPG_04919T0

Spizellomyces punctatus DAOM BR117 : SPPG_06088T0

Amorphotheca resinae v1.0: jgi|Amore1|51219|fgenesh1_pm.7_#_357

Trichoderma virens Gv29-8 : jgi|Trive1|46125|e_gw1.15.541.1

Neurospora tetrasperma : jgi|Neute1|168297|estExt_fgenesh1_pm.C_480024

Chaetomium globosum CBS 148.51 : CHGT_07437

Thielavia terrestris NRRL 8126 : jgi|Thite1|70123|estExt_Genewise1Plus.C_22040

Scleroderma citrinum Foug A v1.0: jgi|Sclci1|898897|CE752282_12320

Mucor circinelloides : jgi|Mucci1|78434|fgeneshMC_pg.2_#_726

Rhizopus oryzae RA 99-880 : RO3T_06246

Phycomyces blakesleeanus : jgi|Phybl1|77060|estExt_fgeneshPB_pg.C_50376

Conidiobolus coronatus NRRL28638 v1.0: jgi|Conco1|7033|gm1.5273_g

Conidiobolus coronatus NRRL28638 v1.0: jgi|Conco1|12724|gm1.10964_g

Monosiga brevicollis : jgi|Monbr1|23622|fgenesh2_pg.scaffold_4000365

Proterospongia sp. ATCC 50818 : PTSG_04206T0

Hydra vulgaris: gi|449666102|ref|XP_002167999.2|

Mnemiopsis leidyi: ML11852a-PA

Anopheles gambiae 49_3j: AGAP011930-PA

Culex pipiens quinquefasciatus : CPIJ003217|conserved

Culex pipiens quinquefasciatus : CPIJ006665|conserved

Culex pipiens quinquefasciatus : CPIJ014282|conserved

Culex pipiens quinquefasciatus : CPIJ016528|conserved

Drosophila erecta 1.3: FBpp0141184

Drosophila erecta 1.3: FBpp0140069

Drosophila simulans 1.3: FBpp0218860

Drosophila persimilis 1.3: FBpp0187418

Atta cephalotes v1.1: AC00379-PA

Acromyrmex echinatior v3.8: Aech_03096

Solenopsis invicta v.2.2.3: SI2.2.0_10543

Pogonomyrmex barbatus v1.2: PB22523-RA

Adineta vaga: GSADVT00018103001

Adineta vaga: GSADVT00049482001

Ciona intestinalis 76: ENSCINP00000015235

Ciona savignyi 76_2.0: ENSCSAVP00000011436

Petromyzon marinus 76_7.0: ENSPMAP00000001580

Procavia capensis 76_1: ENSPCAP00000012009

Pteropus vampyrus 76_1: ENSPVAP00000009845

Equus caballus 76_2: ENSECAP00000005359

Vicugna pacos 76_1: ENSVPAP00000001236

Bos taurus 76_3.1: ENSBTAP00000053855

Ictidomys tridecemlineatus 76_2: ENSSTOP00000019796

Mus musculus 76_38: ENSMUSP00000052716

Physcomitrella patens subsp. patens 22: PP1S188_33V6.1

Physcomitrella patens subsp. patens 22: PP1S352_10V6.1

Macaca mulatta 76_1: ENSMMUP00000016317

Pongo abelii 76_2: ENSPPYP00000020035

Pan troglodytes 76_2.1.4: ENSPTRP00000033463

Homo sapiens 76_38: ENSP00000321927

Homo sapiens 76_38: ENSP00000388608

Homo sapiens 76_38: ENSP00000405434