SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,90229,_gap_,57850,_gap_ superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

40 sequences contain the _gap_,90229,_gap_,57850,_gap_ domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Toxoplasma gondii GT1: gb|TGGT1_081710

Toxoplasma gondii ME49: gb|TGME49_026560

Toxoplasma gondii VEG: gb|TGVEG_067620

Neospora caninum: psu|NCLIV_046420

Perkinsus marinus ATCC 50983 : gi|294896192|ref|XP_002775434.1|

Perkinsus marinus ATCC 50983 : gi|294886121|ref|XP_002771567.1|

Perkinsus marinus ATCC 50983 : gi|294886119|ref|XP_002771566.1|

Phytophthora sojae 1.1: jgi|Physo1_1|129379|estExt_fgenesh1_pg.C_70204

Phytophthora ramorum 1.1: jgi|Phyra1_1|74746|fgenesh1_pg.C_scaffold_9000149

Pythium vexans DAOM BR484 22: EPrPV00000015411

Pythium irregulare DAOM BR486 22: EPrPI00000014837

Pythium aphanidermatum DAOM BR444 22: EPrPA00000014502

Pythium ultimum v1.7-2: PYU1_T010092

Pythium iwayamai DAOM BR242034 22: EPrPW00000015485

Ectocarpus siliculosus: Esi0277_0040

Zea mays v181: GRMZM2G399901_T01|PACid:20878705

Zea mays subsp. mays : GRMZM2G399901_P01

Aegilops tauschii 22: EMT21031

Triticum urartu 22: TRIUR3_22043-P1

Onchocerca volvulus 22: OVOC3097

Tribolium castaneum 3.0: TC004145

Lucilia cuprina: KNC32654

Astyanax mexicanus 76: ENSAMXP00000007888

Lepisosteus oculatus 76: ENSLOCP00000000498

Procavia capensis 76_1: ENSPCAP00000015672

Erinaceus europaeus 76: ENSEEUP00000007395

Canis familiaris 76_3.1: ENSCAFP00000042436

Ailuropoda melanoleuca 76_1: ENSAMEP00000013162

Mustela putorius furo 76_1.0: ENSMPUP00000014525

Oryctolagus cuniculus 76_2: ENSOCUP00000011035

Heterocephalus glaber v1.7-2: HGL_H00000313881

Callithrix jacchus 76_3.2.1: ENSCJAP00000019540

Callithrix jacchus 76_3.2.1: ENSCJAP00000040818

Macaca mulatta 76_1: ENSMMUP00000010347

Papio anubis 76: ENSPANP00000011348

Nomascus leucogenys 76_1.0: ENSNLEP00000022664

Pongo abelii 76_2: ENSPPYP00000007103

Gorilla gorilla 76_3.1: ENSGGOP00000021142

Pan troglodytes 76_2.1.4: ENSPTRP00000011659

Homo sapiens 76_38: ENSP00000313881