SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 55088,48081 superfamilies in all Archaeal genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

55088 - Methyl-coenzyme M reductase subunits
48081 - Methyl-coenzyme M reductase alpha and beta chain C-terminal domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

112 sequences contain the 55088,48081 domain architecture in Archaea.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Methanococcus maripaludis C5: gi|134045063|ref|YP_001096549.1|

Methanococcus maripaludis C5: gi|134045067|ref|YP_001096553.1|

Methanosaeta thermophila PT: gi|116753882|ref|YP_843000.1|

Methanosaeta thermophila PT: gi|116753885|ref|YP_843003.1|

Thermoplasmatales archaeon BRNA1: gi|474934049|ref|YP_007687631.1|

Thermoplasmatales archaeon BRNA1: gi|474934052|ref|YP_007687634.1|

Methanobrevibacter smithii ATCC 35061: gi|148642962|ref|YP_001273475.1|

Methanobrevibacter smithii ATCC 35061: gi|148642965|ref|YP_001273478.1|

Methanobrevibacter smithii ATCC 35061: gi|148643075|ref|YP_001273588.1|

Methanobrevibacter smithii ATCC 35061: gi|148643079|ref|YP_001273592.1|

Methanoculleus marisnigri JR1: gi|126178325|ref|YP_001046290.1|

Methanoculleus marisnigri JR1: gi|126178328|ref|YP_001046293.1|

Methanoculleus marisnigri JR1: gi|126178563|ref|YP_001046528.1|

Methanoculleus marisnigri JR1: gi|126178567|ref|YP_001046532.1|

Methanocaldococcus fervens AG86: gi|256810883|ref|YP_003128252.1|

Methanocaldococcus fervens AG86: gi|256810887|ref|YP_003128256.1|

Methanoregula boonei 6A8: gi|154150125|ref|YP_001403743.1|

Methanoregula boonei 6A8: gi|154150129|ref|YP_001403747.1|

Methanocorpusculum labreanum Z: gi|124485886|ref|YP_001030502.1|

Methanocorpusculum labreanum Z: gi|124485888|ref|YP_001030504.1|

Methanocorpusculum labreanum Z: gi|124486376|ref|YP_001030992.1|

Methanocorpusculum labreanum Z: gi|124486380|ref|YP_001030996.1|

Methanococcus aeolicus Nankai-3: gi|150401686|ref|YP_001325452.1|

Methanococcus aeolicus Nankai-3: gi|150401690|ref|YP_001325456.1|

Methanococcus vannielii SB: gi|150399618|ref|YP_001323385.1|

Methanococcus vannielii SB: gi|150399622|ref|YP_001323389.1|

Methanocella paludicola SANAE: gi|282163182|ref|YP_003355567.1|

Methanocella paludicola SANAE: gi|282163186|ref|YP_003355571.1|

Methanocaldococcus sp. FS406-22: gi|289191913|ref|YP_003457854.1|

Methanocaldococcus sp. FS406-22: gi|289191915|ref|YP_003457856.1|

Methanocaldococcus sp. FS406-22: gi|289192787|ref|YP_003458728.1|

Methanocaldococcus sp. FS406-22: gi|289192791|ref|YP_003458732.1|

Methanobrevibacter ruminantium M1: gi|288561180|ref|YP_003424666.1|

Methanobrevibacter ruminantium M1: gi|288561184|ref|YP_003424670.1|

Methanocella conradii HZ254: gi|383319342|ref|YP_005380183.1|

Methanocella conradii HZ254: gi|383319346|ref|YP_005380187.1|

Methanoculleus bourgensis MS2: gi|397780687|ref|YP_006545160.1|

Methanoculleus bourgensis MS2: gi|397780690|ref|YP_006545163.1|

Methanoculleus bourgensis MS2: gi|397780900|ref|YP_006545373.1|

Methanoculleus bourgensis MS2: gi|397780904|ref|YP_006545377.1|

Methanosaeta harundinacea 6Ac: gi|386001204|ref|YP_005919503.1|

Methanosaeta harundinacea 6Ac: gi|386001201|ref|YP_005919500.1|

Methanosalsum zhilinae DSM 4017: gi|336476793|ref|YP_004615934.1|

Methanosalsum zhilinae DSM 4017: gi|336476797|ref|YP_004615938.1|

Methanothermococcus okinawensis IH1: gi|336121929|ref|YP_004576704.1|

Methanothermococcus okinawensis IH1: gi|336121933|ref|YP_004576708.1|

Methanobrevibacter sp. AbM4: gi|509155599|ref|YP_008075839.1|

Methanobrevibacter sp. AbM4: gi|509155603|ref|YP_008075843.1|

Methanocaldococcus vulcanius M7: gi|261402271|ref|YP_003246495.1|

Methanocaldococcus vulcanius M7: gi|261402275|ref|YP_003246499.1|

Methanocaldococcus vulcanius M7: gi|261403308|ref|YP_003247532.1|

Methanocaldococcus vulcanius M7: gi|261403310|ref|YP_003247534.1|

Methanohalophilus mahii DSM 5219: gi|294495289|ref|YP_003541782.1|

Methanohalophilus mahii DSM 5219: gi|294495293|ref|YP_003541786.1|

Methanohalobium evestigatum Z-7303: gi|298674844|ref|YP_003726594.1|

Methanohalobium evestigatum Z-7303: gi|298674848|ref|YP_003726598.1|

Methanothermobacter marburgensis str. Marburg: gi|304315257|ref|YP_003850404.1|

Methanothermobacter marburgensis str. Marburg: gi|304315260|ref|YP_003850407.1|

Methanothermobacter marburgensis str. Marburg: gi|304315293|ref|YP_003850440.1|

Methanothermobacter marburgensis str. Marburg: gi|304315297|ref|YP_003850444.1|

Methanococcus voltae A3: gi|297619649|ref|YP_003707754.1|

Methanococcus voltae A3: gi|297619653|ref|YP_003707758.1|

methanocaldococcus infernus ME: gi|296108966|ref|YP_003615915.1|

methanocaldococcus infernus ME: gi|296108970|ref|YP_003615919.1|

Methanocella arvoryzae MRE50: gi|147919724|ref|YP_686530.1|

Methanocella arvoryzae MRE50: gi|147919728|ref|YP_686526.1|

Methanosphaerula palustris E1-9c: gi|219852881|ref|YP_002467313.1|

Methanosphaerula palustris E1-9c: gi|219852885|ref|YP_002467317.1|

Methanothermus fervidus DSM 2088: gi|312136955|ref|YP_004004292.1|

Methanothermus fervidus DSM 2088: gi|312136958|ref|YP_004004295.1|

Methanothermus fervidus DSM 2088: gi|312137008|ref|YP_004004345.1|

Methanothermus fervidus DSM 2088: gi|312137012|ref|YP_004004349.1|

Methanosarcina barkeri str. Fusaro: gi|73668432|ref|YP_304447.1|

Methanosarcina barkeri str. Fusaro: gi|73668436|ref|YP_304451.1|

Methanosaeta concilii GP6: gi|330506955|ref|YP_004383383.1|

Methanosaeta concilii GP6: gi|330506958|ref|YP_004383386.1|

Methanobacterium sp. AL-21: gi|325958107|ref|YP_004289573.1|

Methanobacterium sp. AL-21: gi|325958111|ref|YP_004289577.1|

Methanobacterium sp. AL-21: gi|325959998|ref|YP_004291464.1|

Methanobacterium sp. AL-21: gi|325960001|ref|YP_004291467.1|

Methanothermobacter thermautotrophicus str. Delta H: gi|15679140|ref|NP_276257.1|

Methanothermobacter thermautotrophicus str. Delta H: gi|15679143|ref|NP_276260.1|

Methanothermobacter thermautotrophicus str. Delta H: gi|15679175|ref|NP_276292.1|

Methanothermobacter thermautotrophicus str. Delta H: gi|15679179|ref|NP_276296.1|

Methanoplanus petrolearius DSM 11571: gi|307354548|ref|YP_003895599.1|

Methanoplanus petrolearius DSM 11571: gi|307354552|ref|YP_003895603.1|

Methanoplanus petrolearius DSM 11571: gi|307354128|ref|YP_003895179.1|

Methanoplanus petrolearius DSM 11571: gi|307354130|ref|YP_003895181.1|

Methanocaldococcus jannaschii DSM 2661: gi|15668252|ref|NP_247045.1|

Methanocaldococcus jannaschii DSM 2661: gi|15668254|ref|NP_247047.1|

Methanocaldococcus jannaschii DSM 2661: gi|15669032|ref|NP_247836.1|

Methanocaldococcus jannaschii DSM 2661: gi|15669036|ref|NP_247840.1|

Methanotorris igneus Kol 5: gi|333910330|ref|YP_004484063.1|

Methanotorris igneus Kol 5: gi|333910333|ref|YP_004484066.1|

Methanotorris igneus Kol 5: gi|333911102|ref|YP_004484835.1|

Methanotorris igneus Kol 5: gi|333911106|ref|YP_004484839.1|

Methanosphaera stadtmanae DSM 3091: gi|84489139|ref|YP_447371.1|

Methanosphaera stadtmanae DSM 3091: gi|84489142|ref|YP_447374.1|

Methanospirillum hungatei JF-1: gi|88603391|ref|YP_503569.1|

Methanospirillum hungatei JF-1: gi|88603395|ref|YP_503573.1|

Methanococcoides burtonii DSM 6242: gi|91774326|ref|YP_567018.1|

Methanococcoides burtonii DSM 6242: gi|91774330|ref|YP_567022.1|

Methanosarcina acetivorans C2A: gi|20093330|ref|NP_619405.1|

Methanosarcina acetivorans C2A: gi|20093334|ref|NP_619409.1|

Methanopyrus kandleri AV19: gi|20094089|ref|NP_613936.1|

Methanopyrus kandleri AV19: gi|20094093|ref|NP_613940.1|

Methanosarcina mazei Go1: gi|21227342|ref|NP_633264.1|

Methanosarcina mazei Go1: gi|21227346|ref|NP_633268.1|

Complete genome sequence of Methanobacterium sp. Mb1: gi|566003679|ref|YP_008916519.1|

Complete genome sequence of Methanobacterium sp. Mb1: gi|566003683|ref|YP_008916523.1|

Complete genome sequence of Methanobacterium sp. Mb1: gi|566003807|ref|YP_008916647.1|

Complete genome sequence of Methanobacterium sp. Mb1: gi|566003810|ref|YP_008916650.1|