SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 46785,48008,_gap_ superfamilies in all Eubacterial genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

46785 - "Winged helix" DNA-binding domain
48008 - GntR ligand-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

89 sequences contain the 46785,48008,_gap_ domain architecture in Eubacteria.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Enterobacter cloacae subsp. dissolvens SDM: gi|392980500|ref|YP_006479088.1|

Shigella flexneri 5 str. 8401: gi|110806886|ref|YP_690406.1|

Pectobacterium carotovorum subsp. carotovorum PC1: gi|253688547|ref|YP_003017737.1|

Pectobacterium atrosepticum SCRI1043: gi|50121071|ref|YP_050238.1|

Pectobacterium wasabiae WPP163: gi|261821763|ref|YP_003259869.1|

Yersinia enterocolitica subsp. enterocolitica 8081: gi|123443894|ref|YP_001007865.1|

Yersinia pestis Pestoides F: gi|145597677|ref|YP_001161753.1|

Yersinia pseudotuberculosis IP 31758: gi|153950841|ref|YP_001399482.1|

Halothiobacillus neapolitanus c2: gi|261855704|ref|YP_003262987.1|

Bradyrhizobium japonicum USDA 110: gi|27381946|ref|NP_773475.1|

Beijerinckia indica subsp. indica ATCC 9039: gi|182680423|ref|YP_001834569.1|

Mesorhizobium loti MAFF303099: gi|13470825|ref|NP_102394.1|

Mesorhizobium ciceri biovar biserrulae WSM1271: gi|319781781|ref|YP_004141257.1|

Mesorhizobium opportunistum WSM2075: gi|337268744|ref|YP_004612799.1|

Mesorhizobium sp. BNC1: gi|110632727|ref|YP_672935.1|

Rhizobium leguminosarum bv. viciae 3841: gi|116248753|ref|YP_764594.1|

Rhizobium etli CIAT 652: gi|190893333|ref|YP_001979875.1|

Sinorhizobium meliloti AK83: gi|334319093|ref|YP_004551652.1|

Sinorhizobium medicae WSM419: gi|150377904|ref|YP_001314499.1|

Brucella canis ATCC 23365: gi|161620527|ref|YP_001594413.1|

Methylobacterium radiotolerans JCM 2831: gi|170749616|ref|YP_001755876.1|

Methylobacterium nodulans ORS 2060: gi|220921455|ref|YP_002496756.1|

Azorhizobium caulinodans ORS 571: gi|158424965|ref|YP_001526257.1|

Xanthobacter autotrophicus Py2: gi|154246454|ref|YP_001417412.1|

Starkeya novella DSM 506: gi|298290461|ref|YP_003692400.1|

Starkeya novella DSM 506: gi|298291884|ref|YP_003693823.1|

Polymorphum gilvum SL003B-26A1: gi|328545098|ref|YP_004305207.1|

Paracoccus denitrificans PD1222: gi|119387105|ref|YP_918160.1|

Hyphomonas neptunium ATCC 15444: gi|114797204|ref|YP_760902.1|

Sphingomonas wittichii RW1: gi|148550860|ref|YP_001260290.1|

Novosphingobium aromaticivorans DSM 12444: gi|146275597|ref|YP_001165758.1|

Bordetella bronchiseptica RB50: gi|33602336|ref|NP_889896.1|

Bordetella parapertussis 12822: gi|33596376|ref|NP_884019.1|

Bordetella pertussis Tohama I: gi|33593083|ref|NP_880727.1|

Bordetella petrii DSM 12804: gi|163857589|ref|YP_001631887.1|

Advenella kashmirensis WT001: gi|389873643|ref|YP_006381062.1|

Janthinobacterium sp. Marseille: gi|152982693|ref|YP_001351727.1|

Acidovorax citrulli AAC00-1: gi|120612454|ref|YP_972132.1|

Acidovorax sp. KKS102: gi|407936859|ref|YP_006852500.1|

Acidovorax ebreus TPSY: gi|222112619|ref|YP_002554883.1|

Variovorax paradoxus S110: gi|239816639|ref|YP_002945549.1|

Polaromonas sp. JS666: gi|91789326|ref|YP_550278.1|

Polaromonas sp. JS666: gi|91790522|ref|YP_551474.1|

Polaromonas sp. JS666: gi|91790927|ref|YP_551878.1|

Delftia acidovorans SPH-1: gi|160895680|ref|YP_001561262.1|

Delftia acidovorans SPH-1: gi|160901453|ref|YP_001567035.1|

Delftia sp. Cs1-4: gi|333911897|ref|YP_004485629.1|

Delftia sp. Cs1-4: gi|333917491|ref|YP_004491223.1|

Alicycliphilus denitrificans K601: gi|330827209|ref|YP_004390512.1|

Verminephrobacter eiseniae EF01-2: gi|121607736|ref|YP_995543.1|

Verminephrobacter eiseniae EF01-2: gi|121611234|ref|YP_999041.1|

Burkholderia gladioli BSR3: gi|330822013|ref|YP_004350875.1|

Burkholderia vietnamiensis G4: gi|134291969|ref|YP_001115738.1|

Burkholderia cenocepacia HI2424: gi|116686471|ref|YP_839718.1|

Burkholderia sp. RPE64: gi|507516304|ref|YP_008037921.1|

Cupriavidus necator N-1: gi|339327927|ref|YP_004687619.1|

Ralstonia eutropha JMP134: gi|73538626|ref|YP_298993.1|

Ralstonia eutropha JMP134: gi|72383749|ref|YP_293103.1|

Burkholderia xenovorans LB400: gi|91782238|ref|YP_557444.1|

Burkholderia phytofirmans PsJN: gi|187921213|ref|YP_001890245.1|

Pandoraea sp. RB-44: gi|564912614|ref|YP_008879306.1|

Pandoraea sp. RB-44: gi|564913055|ref|YP_008879795.1|

Desulfococcus oleovorans Hxd3: gi|158522777|ref|YP_001530647.1|

Desulfomonile tiedjei DSM 6799: gi|392413601|ref|YP_006450208.1|

Terriglobus roseus DSM 18391: gi|390958767|ref|YP_006422524.1|

Granulicella mallensis MP5ACTX8: gi|374311728|ref|YP_005058158.1|

Thermovirga lienii DSM 17291: gi|357419104|ref|YP_004932096.1|

Sphaerobacter thermophilus DSM 20745: gi|269928710|ref|YP_003321031.1|

Thermomicrobium roseum DSM 5159: gi|221635877|ref|YP_002523753.1|

Rothia dentocariosa ATCC 17931: gi|311112104|ref|YP_003983326.1|

Rothia mucilaginosa DY-18: gi|283457432|ref|YP_003362009.1|

Kocuria rhizophila DC2201: gi|184200130|ref|YP_001854337.1|

Mycobacterium smegmatis str. MC2 155: gi|118473029|ref|YP_888248.1|

Mycobacterium marinum M: gi|183980097|ref|YP_001848388.1|

Mycobacterium ulcerans Agy99: gi|118615973|ref|YP_904305.1|

Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1: gi|297627016|ref|YP_003688779.1|

Microlunatus phosphovorus NM-1: gi|336116654|ref|YP_004571421.1|

Pseudonocardia dioxanivorans CB1190: gi|331695395|ref|YP_004331634.1|

Streptomyces hygroscopicus subsp. jinggangensis 5008: gi|386837375|ref|YP_006242433.1|

Streptomyces scabiei 87.22: gi|290961379|ref|YP_003492561.1|

Streptomyces cattleya NRRL 8057 = DSM 46488: gi|386352175|ref|YP_006050422.1|

Streptomyces bingchenggensis BCW-1: gi|374984274|ref|YP_004959769.1|

Streptomyces griseus subsp. griseus NBRC 13350: gi|182437174|ref|YP_001824893.1|

Streptomyces griseus subsp. griseus NBRC 13350: gi|182437967|ref|YP_001825686.1|

Kitasatospora setae KM-6054: gi|357390770|ref|YP_004905611.1|

Frankia sp. EAN1pec: gi|158313512|ref|YP_001506020.1|

Catenulispora acidiphila DSM 44928: gi|256397506|ref|YP_003119070.1|

Kineococcus radiotolerans SRS30216: gi|152966109|ref|YP_001361893.1|

Acidimicrobium ferrooxidans DSM 10331: gi|256371034|ref|YP_003108858.1|