SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 90229,90229,54791,90229 superfamilies in all Eukaryotic genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
90229 - CCCH zinc finger
54791 - Eukaryotic type KH-domain (KH-domain type I)
90229 - CCCH zinc finger

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Domain combination graphics and links

117 sequences contain the 90229,90229,54791,90229 domain architecture in Eukaryotes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.

Oryza glumaepatula 22: OGLUM02G07170.1

Phaseolus vulgaris v186: Phvulv091027244m|PACid:23540726

Phaseolus vulgaris v186: Phvulv091027245m|PACid:23540725

Phaseolus vulgaris v186: Phvulv091009029m|PACid:23541023

Phaseolus vulgaris v186: Phvulv091021467m|PACid:23559726

Aquilegia coerulea v195: Aquca_014_00875.1|PACid:22027642

Aquilegia coerulea v195: Aquca_009_00034.1|PACid:22035104

Aquilegia coerulea v195: Aquca_009_00034.2|PACid:22035105

Oryza sativa v193: LOC_Os02g10080.1|PACid:21924544

Oryza sativa v193: LOC_Os04g57010.1|PACid:21896031

Oryza sativa v193: LOC_Os06g41384.1|PACid:21930419

Oryza sativa v193: LOC_Os06g41384.2|PACid:21930420

Brachypodium distachyon : EG:BRADI1G35920.1

Brachypodium distachyon : EG:BRADI3G06940.1

Brachypodium distachyon : EG:BRADI5G25340.1

Cucumis sativus v122: Cucsa.142970.1|PACid:16963714

Cucumis sativus v122: Cucsa.242740.1|PACid:16971209

Cucumis sativus v122: Cucsa.263980.1|PACid:16973254

Citrus clementina v165: clementine0.9_017038m|PACid:19265655

Citrus clementina v165: clementine0.9_017532m|PACid:19267206

Citrus clementina v165: clementine0.9_017568m|PACid:19267205

Citrus clementina v165: clementine0.9_017570m|PACid:19267204

Citrus sinensis v154: orange1.1g022221m|PACid:18100664

Citrus sinensis v154: orange1.1g022880m|PACid:18117949

Citrus sinensis v154: orange1.1g022898m|PACid:18117950

Citrus sinensis v154: orange1.1g022928m|PACid:18117951

Eucalyptus grandis v201: Eucgr.K01835.1|PACid:23603333

Eucalyptus grandis v201: Eucgr.B02591.1|PACid:23567782

Oryza brachyantha 22: OB04G35690.1

Oryza brachyantha 22: OB06G29030.1

Panicum virgatum v202: Pavirv00022889m|PACid:23769714

Panicum virgatum v202: Pavirv00032895m|PACid:23775152

Panicum virgatum v202: Pavirv00005871m|PACid:23799669

Panicum virgatum v202: Pavirv00036532m|PACid:23810529

Manihot esculenta v147: cassava4.1_013023m|PACid:17993727

Manihot esculenta v147: cassava4.1_012715m|PACid:17973402

Manihot esculenta v147: cassava4.1_012954m|PACid:17979910

Mimulus guttatus v140: mgv1a010945m|PACid:17682957

Mimulus guttatus v140: mgv1a011179m|PACid:17683682

Mimulus guttatus v140: mgv1a011108m|PACid:17682573

Oryza barthii 22: OBART02G07170.1

Oryza glaberrima: ORGLA06G0175700.1

Oryza glaberrima: ORGLA04G0249800.1

Oryza glaberrima: ORGLA02G0067000.1

Aegilops tauschii 22: EMT06016

Aegilops tauschii 22: EMT10788

Prunus persica v139: ppa009199m|PACid:17647425

Prunus persica v139: ppa009316m|PACid:17667002

Phyllostachys heterocyclavar. pubescens: PH01000178G1080

Phyllostachys heterocyclavar. pubescens: PH01001575G0100

Picea abies: MA_1151g0010

Oryza meridionalis 22: OMERI04G23860.4

Oryza meridionalis 22: OMERI02G08140.1

Setaria italica v164: Si022785m|PACid:19702174

Theobroma cacao B97-61/B2 v1: Tc05_g018850

Theobroma cacao B97-61/B2 v1: Tc01_g015320

Triticum aestivum 22: Traes_2AL_D149074A3.1

Triticum aestivum 22: Traes_2BL_B304E8577.1

Triticum aestivum 22: Traes_6AS_70AD4B0D5.1

Triticum aestivum 22: Traes_7AL_DE759149B.1

Triticum aestivum 22: Traes_7BL_342CAC6CE.1

Triticum aestivum 22: Traes_7DL_BC8BA3B78.1

Oryza nivara 22: ONIVA02G08800.1

Oryza nivara 22: ONIVA06G25000.1

Oryza nivara 22: ONIVA04G27230.2

Linum usitatissimum v200: Lus10016272|PACid:23142691

Linum usitatissimum v200: Lus10021043|PACid:23182370

Malus domestica v196: MDP0000217837|PACid:22654922

Zea mays v181: GRMZM2G124476_T02|PACid:20874540

Zea mays v181: GRMZM2G110402_T02|PACid:20824505

Zea mays v181: GRMZM2G110402_T03|PACid:20824506

Zea mays v181: GRMZM2G071034_T01|PACid:20843581

Zea mays v181: GRMZM2G151689_T03|PACid:20838281

Oryza punctata 22: OPUNC04G26220.1

Oryza punctata 22: OPUNC04G26220.2

Oryza punctata 22: OPUNC02G06300.1

Oryza punctata 22: OPUNC06G19180.1

Medicago truncatula : Medtr7g093130.1

Medicago truncatula : Medtr1g053960.1

Sorghum bicolor : jgi|Sorbi1|5054839|Sb04g006450

Sorghum bicolor : jgi|Sorbi1|5058076|Sb06g032000

Oryza sativa ssp. japonica 5.0: LOC_Os02g10080.1|13102.m01114|protein

Oryza sativa ssp. japonica 5.0: LOC_Os04g57010.1|13104.m05946|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g41384.1|13106.m04320|protein

Oryza sativa ssp. japonica 5.0: LOC_Os06g41384.2|13106.m10558|protein

Ostreococcus lucimarinus CCE9901 : jgi|Ost9901_3|93911|ost_17_001_063

Gossypium raimondii v221: Gorai.009G070300.2|PACid:26765757

Gossypium raimondii v221: Gorai.002G224900.1|PACid:26791882

Gossypium raimondii v221: Gorai.001G072800.1|PACid:26819896

Solanum tuberosum : PGSC0003DMP400011227

Solanum tuberosum : PGSC0003DMP400017335

Solanum tuberosum : PGSC0003DMP400020221

Solanum tuberosum : PGSC0003DMP400041031

Populus trichocarpa v156: POPTR_0001s05070.1|PACid:18236319

Populus trichocarpa v156: POPTR_0016s04590.1|PACid:18250365

Populus trichocarpa v156: POPTR_0016s04690.1|PACid:18250536

Carica papaya : evm.TU.supercontig_235.4

Carica papaya : evm.TU.supercontig_235.5

Amborella trichopoda 22: ERN09271

Musa acuminata 22: GSMUA_Achr1P19650_001

Musa acuminata 22: GSMUA_Achr7P20530_001

Fragaria vesca : gene24425

Triticum urartu 22: TRIUR3_18803-P1

Glycine max v109: Glyma20g39160.1|PACid:16318374

Glycine max v109: Glyma02g29360.1|PACid:16248780

Glycine max v109: Glyma03g30020.1|PACid:16252794

Glycine max v109: Glyma03g30030.1|PACid:16252796

Glycine max v109: Glyma10g44330.1|PACid:16282098

Glycine max v109: Glyma19g32910.1|PACid:16313559

Solanum lycopersicum v.2.3: Solyc01g073940.2.1

Solanum lycopersicum v.2.3: Solyc10g080480.1.1

Solanum lycopersicum v.2.3: Solyc10g078750.1.1

Zea mays subsp. mays : GRMZM2G124476_P02

Zea mays subsp. mays : GRMZM2G110402_P02

Zea mays subsp. mays : GRMZM2G110402_P03

Zea mays subsp. mays : GRMZM2G071034_P01

Zea mays subsp. mays : GRMZM2G151689_P01