SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,90229,_gap_,57850,_gap_ superfamilies in all Eukaryotic genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90229 - CCCH zinc finger
57850 - RING/U-box

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

40 sequences contain the _gap_,90229,_gap_,57850,_gap_ domain architecture in Eukaryotes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Pythium vexans DAOM BR484 22: EPrPV00000015411

Lepisosteus oculatus 76: ENSLOCP00000000498

Astyanax mexicanus 76: ENSAMXP00000007888

Callithrix jacchus 76_3.2.1: ENSCJAP00000019540

Callithrix jacchus 76_3.2.1: ENSCJAP00000040818

Ectocarpus siliculosus: Esi0277_0040

Heterocephalus glaber v1.7-2: HGL_H00000313881

Lucilia cuprina: KNC32654

Mustela putorius furo 76_1.0: ENSMPUP00000014525

Nomascus leucogenys 76_1.0: ENSNLEP00000022664

Aegilops tauschii 22: EMT21031

Ailuropoda melanoleuca 76_1: ENSAMEP00000013162

Perkinsus marinus ATCC 50983 : gi|294896192|ref|XP_002775434.1|

Perkinsus marinus ATCC 50983 : gi|294886121|ref|XP_002771567.1|

Perkinsus marinus ATCC 50983 : gi|294886119|ref|XP_002771566.1|

Pythium ultimum v1.7-2: PYU1_T010092

Onchocerca volvulus 22: OVOC3097

Pythium irregulare DAOM BR486 22: EPrPI00000014837

Canis familiaris 76_3.1: ENSCAFP00000042436

Zea mays v181: GRMZM2G399901_T01|PACid:20878705

Erinaceus europaeus 76: ENSEEUP00000007395

Gorilla gorilla 76_3.1: ENSGGOP00000021142

Papio anubis 76: ENSPANP00000011348

Homo sapiens 76_38: ENSP00000313881

Pongo abelii 76_2: ENSPPYP00000007103

Oryctolagus cuniculus 76_2: ENSOCUP00000011035

Phytophthora ramorum 1.1: jgi|Phyra1_1|74746|fgenesh1_pg.C_scaffold_9000149

Macaca mulatta 76_1: ENSMMUP00000010347

Phytophthora sojae 1.1: jgi|Physo1_1|129379|estExt_fgenesh1_pg.C_70204

Pythium aphanidermatum DAOM BR444 22: EPrPA00000014502

Tribolium castaneum 3.0: TC004145

Toxoplasma gondii ME49: gb|TGME49_026560

Toxoplasma gondii GT1: gb|TGGT1_081710

Neospora caninum: psu|NCLIV_046420

Toxoplasma gondii VEG: gb|TGVEG_067620

Procavia capensis 76_1: ENSPCAP00000015672

Triticum urartu 22: TRIUR3_22043-P1

Pan troglodytes 76_2.1.4: ENSPTRP00000011659

Pythium iwayamai DAOM BR242034 22: EPrPW00000015485

Zea mays subsp. mays : GRMZM2G399901_P01