Domain combinations for Typo IV secretion system protein TraC superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a Typo IV secretion system protein TraC domain in that genome.

Complete genomes

Genome		Number	Proteins
Mus_musculus_76_38	(House mouse)	1	1
Drosophila_ananassae_1.3		2	2
Dictyostelium_purpureum_		1	1
Medicago_truncatula_	(Barrel medic)	1	1
Trichomonas_vaginalis_		1	1
Selenomonas_sputigena_ATCC_35185		1	1
Prosthecochloris_aestuarii_DSM_271		2	2
Zobellia_galactanivorans		1	1
Sulfurospirillum_deleyianum_DSM_6946		1	1
Campylobacter_hominis_ATCC_BAA-381		2	2
Campylobacter_lari_RM2100		1	1
Desulfovibrio_salexigens_DSM_2638		1	1
Geobacter_sp._M21		1	1
Geobacter_metallireducens_GS-15		1	1
Anaeromyxobacter_dehalogenans_2CP-1		1	1
Aromatoleum_aromaticum_EbN1		1	1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1		1	1
Thiomonas_arsenitoxydans		1	1
Leptothrix_cholodnii_SP-6		1	1
Burkholderia_phytofirmans_PsJN		3	3
Burkholderia_phymatum_STM815		1	1
Burkholderia_xenovorans_LB400		3	3
Ralstonia_eutropha_JMP134		1	1
Cupriavidus_necator_N-1		1	1
Burkholderia_sp._CCGE1002		1	1
Burkholderia_ambifaria_AMMD		2	2
Burkholderia_cenocepacia_HI2424		1	1
Burkholderia_multivorans_ATCC_17616		2	2
Burkholderia_vietnamiensis_G4		1	1
Verminephrobacter_eiseniae_EF01-2		1	1
Polaromonas_naphthalenivorans_CJ2		1	1
Variovorax_paradoxus_S110		1	1
Acidovorax_sp._JS42		2	2
Acidovorax_citrulli_AAC00-1		1	1
Comamonas_testosteroni_CNB-2		1	1
Pusillimonas_sp._T7-7		3	3
Advenella_kashmirensis_WT001		2	2
Taylorella_equigenitalis_MCE9		1	1
Bordetella_petrii_DSM_12804		1	1
Bordetella_bronchiseptica_RB50		1	1
Achromobacter_xylosoxidans_A8		1	1
Achromobacter_xylosoxidans		1	1
Nitrosomonas_eutropha_C91		3	3
Methylovorus_glucosetrophus_SIP3-4		1	1
Parvularcula_bermudensis_HTCC2503		1	1
Asticcacaulis_excentricus_CB_48		1	1
Caulobacter_sp._K31		1	1
Phenylobacterium_zucineum_HLK1		2	2
Sphingopyxis_alaskensis_RB2256		1	1
Novosphingobium_sp._PP1Y		1	1
Sphingobium_sp._SYK-6		1	1
Sphingobium_japonicum_UT26S		2	2
Sphingobium_chlorophenolicum_L-1		2	2
Sphingomonas_sp._MM-1		2	2
Sphingomonas_wittichii_RW1		1	1
Hirschia_baltica_ATCC_49814		1	1
Dinoroseobacter_shibae_DFL_12		2	2
Ruegeria_sp._TM1040		1	1
Roseobacter_denitrificans_OCh_114		1	1
Gluconacetobacter_xylinus_NBRC_3288		1	1
Acidiphilium_multivorum_AIU301		3	3
Acidiphilium_cryptum_JF-5		1	1
Polymorphum_gilvum_SL003B-26A1		1	1
Xanthobacter_autotrophicus_Py2		1	1
Methylobacterium_radiotolerans_JCM_2831		1	1
Ochrobactrum_anthropi_ATCC_49188		2	2
Brucella_microti_CCM_4915		1	1
Brucella_pinnipedialis_B2/94		1	1
Brucella_canis_ATCC_23365		1	1
Brucella_suis_ATCC_23445		1	1
Brucella_melitensis_ATCC_23457		1	1
Brucella_ovis_ATCC_25840		1	1
Brucella_abortus_S19		1	1
Sinorhizobium_fredii_NGR234		1	1
Sinorhizobium_medicae_WSM419		1	1
Sinorhizobium_meliloti_AK83		2	2
Rhizobium_etli_CIAT_652		2	2
Rhizobium_leguminosarum_bv._viciae_3841		2	2
Agrobacterium_tumefaciens_str._C58		2	2
Agrobacterium_radiobacter_K84		3	3
Agrobacterium_sp._H13-3		1	1
Agrobacterium_vitis_S4		3	3
Mesorhizobium_sp._BNC1		2	2
Mesorhizobium_opportunistum_WSM2075		1	1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271		1	1
Mesorhizobium_loti_MAFF303099		2	2
Oligotropha_carboxidovorans_OM4		2	2
Nitrobacter_hamburgensis_X14		1	1
Bartonella_tribocorum_CIP_105476		6	6
Bartonella_henselae_str._Houston-1		2	2
Bartonella_grahamii_as4aup		6	6
Bartonella_quintana_str._Toulouse		2	2
Oceanimonas_sp._GK1		1	1
Vibrio_sp._Ex25		1	1
Vibrio_harveyi_ATCC_BAA-1116		1	1
Vibrio_furnissii_NCTC_11218		1	1
Marinobacter_adhaerens_HP15		1	1
Marinobacter_aquaeolei_VT8		1	1
Alcanivorax_borkumensis_SK2		1	1
Halomonas_elongata_DSM_2581		1	1
Pseudoxanthomonas_spadix_BD-a59		1	1
Xylella_fastidiosa_M23		1	1
Xanthomonas_axonopodis_pv._citri_str._306		1	1
Xanthomonas_albilineans_GPE_PC73		5	5
Halothiobacillus_neapolitanus_c2		1	1
Thioalkalivibrio_sp._K90mix		1	1
Legionella_longbeachae_NSW150		1	1
Legionella_pneumophila_str._Corby		2	2
Proteus_mirabilis_HI4320		1	1
Edwardsiella_tarda_EIB202		1	1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071		1	1
Yersinia_pseudotuberculosis_IP_31758		1	1
Yersinia_enterocolitica_subsp._enterocolitica_8081		1	1
Dickeya_zeae_Ech1591		1	1
Pectobacterium_sp._SCC3193		1	1
Pectobacterium_atrosepticum_SCRI1043		1	1
Erwinia_tasmaniensis_Et1/99		2	2
Cronobacter_turicensis_z3032		1	1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum)		2	2
Enterobacteriaceae_bacterium_strain_FGI_57		1	1
Shigella_boydii_CDC_3083-94		1	1
Klebsiella_pneumoniae_NTUH-K2044		1	1
Citrobacter_koseri_ATCC_BAA-895		1	1
Azotobacter_vinelandii_DJ		1	1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421		1	1
Pseudomonas_syringae_pv._tomato_str._DC3000		1	1
Pseudomonas_aeruginosa_UCBPP-PA14		1	1
Pseudomonas_sp._VLB120		1	1
Acinetobacter_baumannii_ATCC_17978		1	1

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Strains

Genome		Number	Proteins
Arcobacter_butzleri_7h1h		1	1
Campylobacter_jejuni_subsp._jejuni_00-2544		1	1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001		1	1
Campylobacter_jejuni_subsp._jejuni_S3		1	1
Campylobacter_jejuni_subsp._jejuni_IA3902		1	1
Campylobacter_jejuni_subsp._jejuni_81-176		2	2
Campylobacter_coli_CVM_N29710		1	1
Neisseria_gonorrhoeae_TCDC-NG08107		1	1
Burkholderia_phenoliruptrix_BR3459a		2	2
Pandoraea_pnomenusa_3kgm		1	1
Ralstonia_solanacearum_FQY_4		1	1
Ralstonia_solanacearum_PSI07		1	1
Ralstonia_solanacearum_CMR15		1	1
Ralstonia_solanacearum_GMI1000		1	1
Burkholderia_sp._YI23		2	2
Burkholderia_sp._KJ006		1	1
Burkholderia_pseudomallei_MSHR305		1	1
Burkholderia_pseudomallei_MSHR346		1	1
Burkholderia_pseudomallei_K96243		1	1
Burkholderia_ambifaria_MC40-6		1	1
Burkholderia_cenocepacia_MC0-3		1	1
Burkholderia_cenocepacia_J2315		2	2
Burkholderia_multivorans_ATCC_17616		2	2
Alicycliphilus_denitrificans_BC		1	1
Variovorax_paradoxus_B4		1	1
Taylorella_equigenitalis_ATCC_35865		1	1
Bordetella_parapertussis_Bpp5		3	3
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061		1	1
Nitrosomonas_sp._AL212		2	2
Phaeobacter_gallaeciensis_DSM_17395		1	1
Phaeobacter_gallaeciensis_DSM_26640		3	3
Octadecabacter_arcticus_238		1	1
Rhodobacter_sphaeroides_ATCC_17025		1	1
Paracoccus_aminophilus_JCM_7686		1	1
Brucella_ceti_TE10759-12		1	1
Brucella_canis_HSK_A52141		1	1
Brucella_suis_VBI22		1	1
Brucella_suis_1330		1	1
Brucella_suis_1330		1	1
Brucella_melitensis_NI		1	1
Brucella_melitensis_M5-90		1	1
Brucella_melitensis_M28		1	1
Brucella_melitensis_bv._1_str._16M		1	1
Brucella_abortus_A13334		1	1
Brucella_melitensis_biovar_Abortus_2308		1	1
Brucella_abortus_bv._1_str._9-941		1	1
Sinorhizobium_fredii_USDA_257		2	2
Sinorhizobium_fredii_HH103		3	3
Sinorhizobium_meliloti_GR4		2	2
Sinorhizobium_meliloti_Rm41		1	1
Sinorhizobium_meliloti_SM11		2	2
Sinorhizobium_meliloti_BL225C		1	1
Sinorhizobium_meliloti_1021		1	1
Rhizobium_etli_CFN_42		2	2
Rhizobium_etli_bv._mimosae_str._Mim1		2	2
Rhizobium_leguminosarum_bv._trifolii_WSM1325		2	2
Mesorhizobium_australicum_WSM2073		1	1
Oligotropha_carboxidovorans_OM5		2	2
Oligotropha_carboxidovorans_OM5		2	2
Bradyrhizobium_sp._BTAi1		1	1
Bartonella_australis_Aust/NH1		3	3
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie		4	4
Bartonella_quintana_RM-11		2	2
Aggregatibacter_actinomycetemcomitans_ANH9381		2	2
Aggregatibacter_actinomycetemcomitans_D11S-1		2	2
Vibrio_fischeri_ES114		1	1
Shewanella_sp._ANA-3		1	1
Stenotrophomonas_maltophilia_D457		1	1
Xylella_fastidiosa_subsp._fastidiosa_GB514		1	1
Xylella_fastidiosa_9a5c		3	3
Xanthomonas_campestris_pv._vesicatoria_str._85-10		3	3
Xanthomonas_axonopodis_pv._citrumelo_F1		1	1
Xanthomonas_axonopodis_Xac29-1		2	2
Xanthomonas_oryzae_pv._oryzae_KACC_10331		1	1
Thioflavicoccus_mobilis_8321		1	1
Legionella_pneumophila_str._Paris		1	1
Legionella_pneumophila_str._Lens		1	1
Legionella_pneumophila_subsp._pneumophila_LPE509		2	2
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay		1	1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1		1	1
Legionella_pneumophila_subsp._pneumophila		1	1
Legionella_pneumophila_subsp._pneumophila		1	1
Legionella_pneumophila_2300/99_Alcoy		2	2
Rahnella_aquatilis_HX2		1	1
Yersinia_pseudotuberculosis_IP_32953		1	1
Yersinia_pestis_biovar_Microtus_str._91001		1	1
Dickeya_dadantii_Ech586		2	2
Dickeya_dadantii_3937		1	1
Pantoea_ananatis_AJ13355		1	1
Cronobacter_sakazakii_ATCC_BAA-894		1	1
Shigella_flexneri_2a_str._2457T		1	1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633		1	1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853		1	1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483		1	1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069		1	1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182		1	1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578		1	1
Klebsiella_oxytoca_KCTC_1686		1	1
Klebsiella_pneumoniae_342		1	1
Klebsiella_pneumoniae_subsp._pneumoniae_1084		1	1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286		1	1
Enterobacter_aerogenes_EA1509E		1	1
Escherichia_coli_E._coli_PMV-1		1	1
Escherichia_coli_JJ1886		1	1
Escherichia_coli_Xuzhou21		1	1
Escherichia_coli_ED1a		1	1
Escherichia_coli_UMN026		2	2
Escherichia_coli_HS		1	1
Escherichia_coli_O157:H7_str._EC4115		1	1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047		1	1
Azotobacter_vinelandii_CA6		1	1
Azotobacter_vinelandii_CA		1	1
Pseudomonas_denitrificans_ATCC_13867		1	1
Pseudomonas_syringae_pv._phaseolicola_1448A		1	1
Pseudomonas_monteilii_SB3078		1	1
Pseudomonas_putida_H8234		1	1
Pseudomonas_putida_DOT-T1E		1	1
Pseudomonas_putida_S16		1	1
Pseudomonas_fluorescens_A506		1	1
Pseudomonas_aeruginosa_SCV20265		1	1
Pseudomonas_aeruginosa_B136-33		1	1
Pseudomonas_aeruginosa_NCGM2.S1		1	1
Acinetobacter_baumannii__ATCC_19606		1	1
Methylophaga_sp._JAM7		2	2
Cycloclasticus_zancles_7-ME		1	1

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Others

Genome		Number	Proteins
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC)		1	1
NCBI_plasmid_sequences_(Plasmids)		357	357
TargetDB__(Targets)		5	5
NCBI_2017_08_genome		14975	14968
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		3	3
Protein_Data_Bank_(all_PDB_sequenc)		1	1
STRING_v9.0.5_(STRING)		176	176
PDB_chains_(SCOP_1.75)_(PDB)		1	1
Protozoadb_2010_08_(Protozoadb)		2	2
Uniprot_2018_03_genome		3723	3716

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