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Domain combinations for Plant invertase/pectin methylesterase inhibitor superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Plant invertase/pectin methylesterase inhibitor domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 13 13
Pinus_taeda   (Loblolly pine)   90 82
Picea_abies   (Norway spruce)   57 53
Eucalyptus_grandis_v201   (Rose gum)   46 46
Theobroma_cacao_B97-61/B2_v1   (Cacao)   74 72
Gossypium_raimondii_v221 152 152
Citrus_clementina_v165 75 75
Citrus_sinensis_v154   (Sweet orange)   78 78
Thellungiella_halophila_v173 105 105
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   167 167
Capsella_rubella_v183 130 130
Arabidopsis_lyrata_   (Lyrate rockcress)   133 132
Arabidopsis_thaliana_10   (Thale cress)   128 125
Carica_papaya_   (Papaya)   54 54
Medicago_truncatula_   (Barrel medic)   171 171
Phaseolus_vulgaris_v186   (French bean)   105 104
Glycine_max_v109   (Soybean)   163 163
Cucumis_sativus_v122   (Cucumber)   62 62
Fragaria_vesca_   (Wild strawberry)   84 82
Malus_domestica_v196   (Apple)   148 144
Prunus_persica_v139   (Peach)   70 70
Linum_usitatissimum_v200   (Flax)   162 160
Manihot_esculenta_v147   (Cassava)   100 100
Populus_trichocarpa_v156   (Black cottonwood)   121 118
Vitis_vinifera_   (Wine grape)   21 21
Mimulus_guttatus_v140   (Spotted monkey flower)   115 115
Solanum_lycopersicum_v.2.3   (Tomato)   86 86
Solanum_tuberosum_   (Potato)   114 113
Actinidia_chinensis_Hongyang_ 111 109
Aquilegia_coerulea_v195 63 63
Triticum_urartu_22 85 85
Triticum_aestivum_22   (Bread wheat)   95 95
Aegilops_tauschii_22 95 94
Brachypodium_distachyon_   (Stiff brome)   64 60
Oryza_barthii_22   (African wild rice)   61 59
Oryza_meridionalis_22 64 61
Oryza_glumaepatula_22 72 69
Oryza_glaberrima   (African rice)   58 58
Oryza_punctata_22 74 70
Oryza_nivara_22 70 67
Oryza_brachyantha_22   (Malo sina)   48 47
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   80 80
Oryza_sativa_v193   (Rice)   81 81
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   30 30
Panicum_virgatum_v202   (Switchgrass)   131 131
Setaria_italica_v164   (Foxtail millet)   67 67
Zea_mays_subsp._mays_   (Maize)   76 76
Zea_mays_v181   (Maize)   79 79
Sorghum_bicolor_   (Sorghum)   73 73
Musa_balbisiana   (Balbis banana)   89 88
Musa_acuminata_22   (Wild Malaysian banana)   58 58
Amborella_trichopoda_22 40 40
Physcomitrella_patens 12 12

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   71 70
Hordeum_vulgare_22   (Domesticated barley)   68 68
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   71 70

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   126 123

Others
Genome     Number   Proteins
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5 5
Lotus_japonicus__(Early_assembly) 69 69
Malus_x_domestica_(Duplicate)   (Apple)   148 144
Ricinus_communis__(Early_assembly)   (Castor bean)   72 71
Nicotiana_benthamiana_0.4.4_(Early_draft) 169 160
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   86 86
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   86 86
Phoenix_dactylifera__(Early_draft)   (Date palm)   13 13
PDB_chains_(SCOP_1.75)_(PDB) 5 5
TargetDB__(Targets) 63 62
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 75 75
STRING_v9.0.5_(STRING) 720 708
Protein_Data_Bank_(all_PDB_sequenc) 25 25
NCBI_2017_08_genome 7844 7819
Uniprot_2018_03_genome 9281 9188

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