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Domain combinations for YgfB-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YgfB-like domain in that genome.

Complete genomes
Genome Number Proteins

Capitella_sp._I_ 1 1

Setaria_italica_v164 (Foxtail millet) 1 1

Phytophthora_capsici_ 1 1

Acidimicrobium_ferrooxidans_DSM_10331 1 1

Pelodictyon_phaeoclathratiforme_BU-1 3 3

Chlorobium_luteolum_DSM_273 1 1

Chlorobium_chlorochromatii_CaD3 1 1

Chlorobium_phaeobacteroides_DSM_266 1 1

Chlorobium_phaeovibrioides_DSM_265 1 1

Chlorobium_limicola_DSM_245 2 2

Chlorobaculum_parvum_NCIB_8327 1 1

Chlorobium_tepidum_TLS 2 2

Prosthecochloris_aestuarii_DSM_271 1 1

Desulfovibrio_magneticus_RS-1 1 1

Pelobacter_propionicus_DSM_2379 2 2

Dechloromonas_aromatica_RCB 1 1

Thauera_sp._MZ1T 2 2

Azoarcus_sp._KH32C 2 2

Azoarcus_sp._BH72 1 1

Aromatoleum_aromaticum_EbN1 1 1

Dechlorosoma_suillum_PS 1 1

Pseudogulbenkiania_sp._NH8B 2 2

Chromobacterium_violaceum_ATCC_12472 2 2

Neisseria_meningitidis_alpha14 1 1

Neisseria_meningitidis_FAM18 1 1

Neisseria_lactamica_020-06 1 1

Neisseria_gonorrhoeae_NCCP11945 1 1

Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1

Methylibium_petroleiphilum_PM1 1 1

Thiomonas_arsenitoxydans 2 2

Rubrivivax_gelatinosus_IL144 3 3

Leptothrix_cholodnii_SP-6 2 2

Burkholderia_phymatum_STM815 2 2

Ralstonia_eutropha_JMP134 1 1

Cupriavidus_taiwanensis_LMG_19424 1 1

Burkholderia_multivorans_ATCC_17616 1 1

Burkholderia_vietnamiensis_G4 1 1

Burkholderia_gladioli_BSR3 2 2

Burkholderia_glumae_BGR1 1 1

Alicycliphilus_denitrificans_K601 1 1

Ramlibacter_tataouinensis_TTB310 1 1

Delftia_sp._Cs1-4 1 1

Delftia_acidovorans_SPH-1 3 3

Polaromonas_sp._JS666 1 1

Polaromonas_naphthalenivorans_CJ2 1 1

Variovorax_paradoxus_S110 1 1

Rhodoferax_ferrireducens_T118 1 1

Acidovorax_ebreus_TPSY 1 1

Acidovorax_sp._KKS102 1 1

Acidovorax_sp._JS42 1 1

Acidovorax_citrulli_AAC00-1 3 3

Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1

Herminiimonas_arsenicoxydans 1 1

Collimonas_fungivorans_Ter331 1 1

Janthinobacterium_sp._Marseille 1 1

Herbaspirillum_seropedicae_SmR1 1 1

Thiobacillus_denitrificans_ATCC_25259 1 1

Nitrosomonas_sp._Is79A3 2 2

Sideroxydans_lithotrophicus_ES-1 1 1

Gallionella_capsiferriformans_ES-2 2 2

Magnetococcus_marinus_MC-1 1 1

Caulobacter_sp._K31 1 1

Novosphingobium_sp._PP1Y 1 1

Paracoccus_denitrificans_PD1222 1 1

Azospirillum_sp._B510 1 1

Ochrobactrum_anthropi_ATCC_49188 3 3

Brucella_microti_CCM_4915 1 1

Brucella_pinnipedialis_B2/94 1 1

Brucella_canis_ATCC_23365 1 1

Brucella_suis_ATCC_23445 1 1

Brucella_melitensis_ATCC_23457 1 1

Brucella_ovis_ATCC_25840 1 1

Brucella_abortus_S19 1 1

Sinorhizobium_fredii_NGR234 2 2

Sinorhizobium_medicae_WSM419 5 5

Sinorhizobium_meliloti_AK83 3 3

Mesorhizobium_sp._BNC1 1 1

Rhodopseudomonas_palustris_BisA53 1 1

Bradyrhizobium_sp._ORS_278 1 1

Saccharophagus_degradans_2-40 1 1

Teredinibacter_turnerae_T7901 1 1

Cellvibrio_japonicus_Ueda107 2 2

Aggregatibacter_aphrophilus_NJ8700 1 1

Aggregatibacter_actinomycetemcomitans_D7S-1 1 1

Haemophilus_somnus_129PT 1 1

Gallibacterium_anatis_UMN179 1 1

Pasteurella_multocida_subsp._multocida_str._3480 1 1

Haemophilus_parasuis_SH0165 1 1

Haemophilus_ducreyi_35000HP 1 1

Haemophilus_parainfluenzae_T3T1 1 1

Haemophilus_influenzae_PittEE 1 1

Actinobacillus_succinogenes_130Z 1 1

Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1 1

Oceanimonas_sp._GK1 1 1

Tolumonas_auensis_DSM_9187 1 1

Aeromonas_veronii_B565 2 2

Aeromonas_salmonicida_subsp._salmonicida_A449 3 3

Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 2 2

Aliivibrio_salmonicida_LFI1238 2 2

Vibrio_fischeri_MJ11 2 2

Vibrio_sp._Ex25 2 2

Vibrio_harveyi_ATCC_BAA-1116 2 2

Vibrio_parahaemolyticus_RIMD_2210633 2 2

Vibrio_splendidus_LGP32 3 3

Vibrio_anguillarum_775 2 2

Vibrio_furnissii_NCTC_11218 3 3

Vibrio_vulnificus_MO6-24/O 2 2

Vibrio_cholerae_O395 2 2

Photobacterium_profundum_SS9 2 2

Psychromonas_ingrahamii_37 2 2

Psychromonas_sp._CNPT3 1 1

Idiomarina_loihiensis_L2TR 1 1

Ferrimonas_balearica_DSM_9799 2 2

Shewanella_piezotolerans_WP3 1 1

Shewanella_loihica_PV-4 1 1

Shewanella_halifaxensis_HAW-EB4 1 1

Shewanella_sediminis_HAW-EB3 1 1

Shewanella_denitrificans_OS217 1 1

Shewanella_pealeana_ATCC_700345 1 1

Shewanella_oneidensis_MR-1 1 1

Shewanella_baltica_OS185 1 1

Shewanella_woodyi_ATCC_51908 1 1

Shewanella_sp._MR-4 1 1

Shewanella_amazonensis_SB2B 1 1

Shewanella_violacea_DSS12 1 1

Shewanella_frigidimarina_NCIMB_400 1 1

Shewanella_putrefaciens_CN-32 1 1

Colwellia_psychrerythraea_34H 1 1

Pseudoalteromonas_sp._SM9913 2 2

Pseudoalteromonas_atlantica_T6c 2 2

Pseudoalteromonas_haloplanktis_TAC125 2 2

Glaciecola_sp._4H-3-7+YE-5 2 2

Glaciecola_nitratireducens_FR1064 2 2

Marinobacter_adhaerens_HP15 2 2

Marinobacter_sp._BSs20148 2 2

Marinobacter_hydrocarbonoclasticus_ATCC_49840 2 2

Marinobacter_aquaeolei_VT8 2 2

Alteromonas_sp._SN2 1 1

Alteromonas_macleodii_str._'Deep_ecotype' 2 2

Kangiella_koreensis_DSM_16069 1 1

Hahella_chejuensis_KCTC_2396 3 3

Alcanivorax_borkumensis_SK2 2 2

Marinomonas_posidonica_IVIA-Po-181 3 3

Marinomonas_sp._MWYL1 3 3

Marinomonas_mediterranea_MMB-1 3 3

Chromohalobacter_salexigens_DSM_3043 2 2

Halomonas_elongata_DSM_2581 2 2

Methylomicrobium_alcaliphilum 2 2

Methylomonas_methanica_MC09 1 1

Methylococcus_capsulatus_str._Bath 1 1

Dichelobacter_nodosus_VCS1703A 1 1

Rhodanobacter_denitrificans 2 2

Frateuria_aurantia_DSM_6220 2 2

Pseudoxanthomonas_spadix_BD-a59 1 1

Pseudoxanthomonas_suwonensis_11-1 2 2

Stenotrophomonas_maltophilia_K279a 1 1

Xylella_fastidiosa_M23 1 1

Xanthomonas_axonopodis_pv._citri_str._306 2 2

Xanthomonas_albilineans_GPE_PC73 1 1

Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1

Xanthomonas_campestris_pv._campestris_str._B100 1 1

Halothiobacillus_neapolitanus_c2 1 1

Spiribacter_sp._UAH-SP71 1 1

Alkalilimnicola_ehrlichii_MLHE-1 1 1

Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1

Thioalkalivibrio_sp._K90mix 1 1

Halorhodospira_halophila_SL1 1 1

Allochromatium_vinosum_DSM_180 1 1

Thiocystis_violascens_DSM_198 1 1

Nitrosococcus_watsonii_C-113 1 1

Nitrosococcus_halophilus_Nc4 1 1

Nitrosococcus_oceani_ATCC_19707 1 1

Legionella_longbeachae_NSW150 1 1

Legionella_pneumophila_str._Corby 1 1

gamma_proteobacterium_HdN1 2 2

Photorhabdus_asymbiotica 1 1

Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1

Xenorhabdus_bovienii_SS-2004 1 1

Xenorhabdus_nematophila_ATCC_19061 1 1

Providencia_stuartii_MRSN_2154 1 1

Proteus_mirabilis_HI4320 1 1

Edwardsiella_ictaluri_93-146 1 1

Edwardsiella_tarda_EIB202 1 1

Rahnella_sp._Y9602 1 1

Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1

Yersinia_pseudotuberculosis_IP_31758 1 1

Yersinia_pestis_Pestoides_F 1 1

Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1

Serratia_sp._AS12 1 1

Serratia_sp._ATCC_39006 1 1

Serratia_plymuthica_AS9 1 1

Serratia_proteamaculans_568 1 1

Dickeya_dadantii_Ech703 1 1

Dickeya_zeae_Ech1591 1 1

Pectobacterium_wasabiae_WPP163 1 1

Pectobacterium_sp._SCC3193 1 1

Pectobacterium_atrosepticum_SCRI1043 1 1

Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1

Sodalis_glossinidius_str._'morsitans' 1 1

Pantoea_sp._At-9b 2 2

Pantoea_vagans_C9-1 2 2

Pantoea_ananatis_LMG_20103 2 2

Erwinia_tasmaniensis_Et1/99 2 2

Erwinia_sp._Ejp617 2 2

Erwinia_billingiae_Eb661 2 2

Erwinia_pyrifoliae_Ep1/96 2 2

Erwinia_amylovora_ATCC_49946 2 2

Escherichia_blattae_DSM_4481 2 2

Cronobacter_turicensis_z3032 2 2

Cronobacter_sakazakii_ES15 2 2

Enterobacteriaceae_bacterium_strain_FGI_57 2 2

Shigella_sonnei_Ss046 2 2

Shigella_flexneri_5_str._8401 2 2

Shigella_dysenteriae_Sd197 2 2

Shigella_boydii_CDC_3083-94 2 2

Salmonella_bongori_NCTC_12419 2 2

Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 2 2

Klebsiella_oxytoca_E718 2 2

Klebsiella_variicola_At-22 2 2

Klebsiella_pneumoniae_NTUH-K2044 2 2

Enterobacter_aerogenes_KCTC_2190 2 2

Escherichia_fergusonii_ATCC_35469 2 2

Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 2 2

Enterobacter_sp._R4-368 1 1

Enterobacter_sp._638 2 2

Enterobacter_asburiae_LF7a 2 2

Enterobacter_cloacae_subsp._dissolvens_SDM 2 2

Citrobacter_rodentium_ICC168 2 2

Citrobacter_koseri_ATCC_BAA-895 2 2

Azotobacter_vinelandii_DJ 2 2

Pseudomonas_sp._TKP 3 3

Pseudomonas_sp._UW4 2 2

Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2 2

Pseudomonas_entomophila_L48 3 3

Pseudomonas_syringae_pv._tomato_str._DC3000 2 2

Pseudomonas_stutzeri_A1501 2 2

Pseudomonas_fulva_12-X 3 3

Pseudomonas_putida_F1 3 3

Pseudomonas_protegens_Pf-5 3 3

Pseudomonas_fluorescens_SBW25 3 3

Pseudomonas_mendocina_ymp 3 3

Pseudomonas_aeruginosa_UCBPP-PA14 2 2

Pseudomonas_sp._VLB120 3 3

Psychrobacter_sp._G 2 2

Psychrobacter_sp._PRwf-1 2 2

Psychrobacter_arcticus_273-4 2 2

Psychrobacter_cryohalolentis_K5 2 2

Moraxella_catarrhalis_RH4 2 2

Acinetobacter_oleivorans_DR1 2 2

Acinetobacter_calcoaceticus_PHEA-2 2 2

Acinetobacter_baumannii_ATCC_17978 2 2

Acinetobacter_sp._ADP1 2 2

Methylophaga_sp._JAM1 1 1

Cycloclasticus_sp._P1 2 2

Thiomicrospira_crunogena_XCL-2 1 1

Thioalkalimicrobium_cyclicum_ALM1 1 1

Francisella_noatunensis_subsp._orientalis_str._Toba_04 1 1

Francisella_sp._TX077308 1 1

Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1 1

Francisella_tularensis_subsp._tularensis_WY96-3418 1 1

Francisella_cf._novicida_3523 1 1

Francisella_novicida_U112 1 1

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Others
Genome Number Proteins

Ricinus_communis__(Early_assembly) (Castor bean) 1 1

Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2

NCBI_plasmid_sequences_(Plasmids) 40 40

PDB_chains_(SCOP_1.75)_(PDB) 1 1

TargetDB__(Targets) 9 9

STRING_v9.0.5_(STRING) 441 441

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4 4

Uniprot_2018_03_genome 8377 8373

Protein_Data_Bank_(all_PDB_sequenc) 3 3

NCBI_2017_08_genome 69493 69492

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Domain combinations for YgfB-like superfamily in groups of genomes