SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > NHL repeat > Domain combinations

Domain combinations for NHL repeat superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a NHL repeat domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   40 39
Pan_troglodytes_76_2.1.4   (Chimpanzee)   13 12
Gorilla_gorilla_76_3.1   (Western gorilla)   18 18
Pongo_abelii_76_2   (Sumatran orangutan)   15 15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   17 17
Papio_anubis_76   (Olive baboon)   15 15
Macaca_mulatta_76_1   (Rhesus monkey)   21 21
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   35 31
Otolemur_garnettii_76_3   (Small-eared galago)   15 15
Microcebus_murinus_76_1   (Gray mouse lemur)   9 9
Rattus_norvegicus_76_5.0   (Norway rat)   14 14
Mus_musculus_76_38   (House mouse)   33 30
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10 10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   13 13
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   12 12
Cavia_porcellus_76_3   (Domestic guinea pig)   15 14
Oryctolagus_cuniculus_76_2   (Rabbit)   17 17
Ochotona_princeps_76   (American pika)   10 10
Tupaia_belangeri_76   (Northern tree shrew)   6 6
Sus_scrofa_76_10.2   (Pig)   15 14
Bos_taurus_76_3.1   (Cattle)   16 16
Ovis_aries_76_3.1   (Sheep)   14 14
Vicugna_pacos_76_1   (Alpaca)   5 5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   12 12
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15 15
Ailuropoda_melanoleuca_76_1   (Giant panda)   17 17
Canis_familiaris_76_3.1   (Dog)   17 16
Felis_catus_76_6.2   (Domestic cat)   18 17
Equus_caballus_76_2   (Horse)   17 17
Myotis_lucifugus_76_2.0   (Little brown bat)   12 12
Pteropus_vampyrus_76_1   (Large flying fox)   12 12
Sorex_araneus_76_1   (European shrew)   6 6
Erinaceus_europaeus_76   (Western European hedgehog)   10 10
Procavia_capensis_76_1   (Cape rock hyrax)   10 10
Loxodonta_africana_76_3   (African savanna elephant)   18 18
Echinops_telfairi_76   (Small Madagascar hedgehog)   10 9
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   20 18
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   13 13
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11 11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   15 14
Ornithorhynchus_anatinus_76_5   (Platypus)   17 16
Saccoglossus_kowalevskii_v3.0 135 133
Petromyzon_marinus_76_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_76_2   (Turkey)   11 11
Gallus_gallus_76_4   (Chicken)   13 13
Anas_platyrhynchos_76_1.0   (Mallard)   14 13
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   15 13
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15 14
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   18 17
Anolis_carolinensis_76_2.0   (Green anole)   12 12
Xenopus_laevis_   (African clawed frog)   14 14
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   14 14
Latimeria_chalumnae_76_1   (Coelacanth)   12 12
Lepisosteus_oculatus_76   (Spotted gar)   19 19
Gadus_morhua_76_1   (Atlantic cod)   18 18
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   25 24
Takifugu_rubripes_76_4   (Torafugu)   58 47
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   16 16
Oryzias_latipes_76_1   (Japanese medaka)   21 19
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   16 15
Poecilia_formosa_76   (Amazon molly)   14 14
Oreochromis_niloticus_76_1.0   (Nile tilapia)   23 22
Astyanax_mexicanus_76   (Mexican tetra)   19 17
Danio_rerio_76_9   (Zebrafish)   31 31
Oikopleura_dioica 10 10
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   8 8
Ciona_intestinalis_76   (Vase tunicate)   10 10
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   115 115
Adineta_vaga 454 368
Octopus_bimaculoides_280 40 40
Crassostrea_gigas_22   (Pacific oyster)   748 726
Lottia_gigantea_   (Owl limpet)   24 24
Helobdella_robusta_ 36 36
Capitella_sp._I_ 34 34
Danaus_plexippus_OGS1.0   (Monarch butterfly)   15 15
Heliconius_melpomene_   (Postman butterfly)   15 15
Bombyx_mori_   (Domestic silkworm)   16 16
Nasonia_vitripennis_   (Jewel wasp)   15 15
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   31 31
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   11 11
Linepithema_humile_v1.1   (Argentine ant)   16 16
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   14 14
Solenopsis_invicta_v.2.2.3   (Red fire ant)   10 10
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   11 11
Atta_cephalotes_v1.1 15 15
Camponotus_floridanus_v3.3   (Florida carpenter ant)   12 12
Lucilia_cuprina   (Australian sheep blowfly)   11 11
Drosophila_grimshawi_1.3 11 11
Drosophila_willistoni_1.3 12 12
Drosophila_pseudoobscura_2.13 12 12
Drosophila_persimilis_1.3 46 46
Drosophila_suzukii 10 10
Drosophila_yakuba_1.3 8 8
Drosophila_simulans_1.3 7 7
Drosophila_sechellia_1.3 10 10
Drosophila_melanogaster_76_5   (Fruit fly)   28 28
Drosophila_erecta_1.3 8 8
Drosophila_ananassae_1.3 11 11
Drosophila_virilis_1.2 15 15
Drosophila_mojavensis_1.3 9 9
Megaselia_scalaris_22 4 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12 12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11 11
Anopheles_darlingi_22   (American malaria mosquito)   9 9
Anopheles_gambiae_49_3j   (African malaria mosquito)   11 11
Tribolium_castaneum_3.0   (Red flour beetle)   14 14
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   12 12
Acyrthosiphon_pisum_   (Pea aphid)   10 10
Rhodnius_prolixus_22 10 10
Daphnia_pulex_   (Common water flea)   10 9
Strigamia_maritima_22 12 12
Sarcoptes_scabiei 14 12
Tetranychus_urticae_   (Two-spotted spider mite)   10 10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   11 11
Pristionchus_pacificus_ 8 8
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Meloidogyne_hapla_ 4 4
Onchocerca_volvulus_22 9 9
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   16 16
Caenorhabditis_japonica_ 12 12
Caenorhabditis_brenneri_ 15 15
Caenorhabditis_remanei_ 9 9
Caenorhabditis_elegans_76_235   (Roundworm)   19 19
Caenorhabditis_briggsae_2 7 7
Trichinella_spiralis_22 8 8
Hymenolepis_microstoma_ 2 2
Echinococcus_multilocularis_ 5 5
Echinococcus_granulosus_ 4 4
Taenia_solium_   (Pork tapeworm)   6 6
Schistosoma_mansoni_ 4 4
Mnemiopsis_leidyi   (Sea walnut)   13 11
Acropora_digitifera_v1.0 115 108
Nematostella_vectensis_1.0   (Starlet sea anemone)   39 39
Hydra_vulgaris 6 6
Amphimedon_queenslandica 241 240
Trichoplax_adhaerens_ 5 5
Proterospongia_sp._ATCC_50818_ 52 48
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 2 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2 2
Melampsora_laricis-populina_ 2 2
Rhodotorula_graminis_WP1_v1.0 1 1
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 1 1
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 4 4
Piloderma_croceum_F_1598_v1.0 5 5
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 3 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 1 1
Scleroderma_citrinum_Foug_A_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   2 2
Amanita_thiersii_Skay4041_v1.0 2 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 2 2
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 2 2
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 3 3
Wolfiporia_cocos_MD-104_SS10__v1.0 4 4
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Podospora_anserina_ 1 1
Neurospora_tetrasperma_ 3 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   5 5
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 3 3
Fusarium_graminearum_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 2 2
Trichoderma_atroviride_ 1 1
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 3 3
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 4 4
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 6 6
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 2 2
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 3 3
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 4 4
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 5 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_immitis_RS_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 2 2
Aspergillus_flavus_NRRL3357_ 2 2
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2 2
Candida_tropicalis_MYA-3404_ 2 2
Candida_parapsilosis_ 2 2
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 2 2
Debaromyces_hansenii 2 2
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 1 1
Yarrowia_lipolytica_CLIB122 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 2 2
Lachancea_kluyveri_ 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 2 2
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 2 2
Allomyces_macrogynus_ATCC_38327_ 5 5
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 3 3
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 4 4
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 11 11
Pinus_taeda   (Loblolly pine)   4 4
Picea_abies   (Norway spruce)   5 5
Eucalyptus_grandis_v201   (Rose gum)   16 16
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6 6
Gossypium_raimondii_v221 13 13
Citrus_clementina_v165 7 7
Citrus_sinensis_v154   (Sweet orange)   8 8
Thellungiella_halophila_v173 8 8
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   13 13
Capsella_rubella_v183 9 9
Arabidopsis_lyrata_   (Lyrate rockcress)   8 8
Arabidopsis_thaliana_10   (Thale cress)   12 12
Carica_papaya_   (Papaya)   5 5
Medicago_truncatula_   (Barrel medic)   17 17
Phaseolus_vulgaris_v186   (French bean)   7 7
Glycine_max_v109   (Soybean)   10 10
Cucumis_sativus_v122   (Cucumber)   13 13
Fragaria_vesca_   (Wild strawberry)   7 7
Malus_domestica_v196   (Apple)   14 14
Prunus_persica_v139   (Peach)   8 8
Linum_usitatissimum_v200   (Flax)   14 14
Manihot_esculenta_v147   (Cassava)   8 8
Populus_trichocarpa_v156   (Black cottonwood)   12 12
Vitis_vinifera_   (Wine grape)   5 5
Mimulus_guttatus_v140   (Spotted monkey flower)   11 11
Solanum_lycopersicum_v.2.3   (Tomato)   8 8
Solanum_tuberosum_   (Potato)   10 10
Actinidia_chinensis_Hongyang_ 8 8
Aquilegia_coerulea_v195 26 26
Triticum_urartu_22 10 10
Triticum_aestivum_22   (Bread wheat)   21 21
Aegilops_tauschii_22 11 11
Brachypodium_distachyon_   (Stiff brome)   15 15
Oryza_barthii_22   (African wild rice)   9 9
Oryza_meridionalis_22 14 14
Oryza_glumaepatula_22 14 14
Oryza_glaberrima   (African rice)   4 4
Oryza_punctata_22 20 20
Oryza_nivara_22 13 13
Oryza_brachyantha_22   (Malo sina)   8 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10 10
Oryza_sativa_v193   (Rice)   8 8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   7 7
Panicum_virgatum_v202   (Switchgrass)   20 20
Setaria_italica_v164   (Foxtail millet)   18 18
Zea_mays_subsp._mays_   (Maize)   28 28
Zea_mays_v181   (Maize)   33 33
Sorghum_bicolor_   (Sorghum)   10 10
Musa_balbisiana   (Balbis banana)   8 8
Musa_acuminata_22   (Wild Malaysian banana)   10 10
Amborella_trichopoda_22 5 5
Physcomitrella_patens 10 10
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 4 4
Volvox_carteri_f._nagariensis_ 10 10
Volvox_carteri_v199 5 5
Chlamydomonas_reinhardtii_4.0 2 2
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 4 4
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 4 4
Micromonas_pusilla_CCMP1545_v3.0 3 3
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 9 9
Thecamonas_trahens_ATCC_50062_ 5 5
Bigelowiella_natans_CCMP2755_22 59 57
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 7 7
Leishmania_mexicana_2.4 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 3 3
Ectocarpus_siliculosus 3 3
Aureococcus_anophagefferens_ 5 5
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_arrhenomanes_ATCC_12531_22 4 4
Pythium_ultimum_v1.7-2 5 5
Pythium_aphanidermatum_DAOM_BR444_22 4 3
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 4 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 4 4
Phytophthora_capsici_ 2 2
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 7 7
Thalassiosira_pseudonana_CCMP1335 2 2
Perkinsus_marinus_ATCC_50983_ 15 15
Paramecium_tetraurelia_ 5 5
Tetrahymena_thermophila_SB210_1_ 10 10
Neospora_caninum 3 3
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 2 2
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 37 36
Naegleria_gruberi_ 225 167
Trichomonas_vaginalis_ 13 13
Guillardia_theta_CCMP2712_v1.0_ 21 21
Emiliania_huxleyi_CCMP1516_ 43 43
Thermobaculum_terrenum_ATCC_BAA-798 2 2
Leptolyngbya_sp._PCC_7376 1 1
Acaryochloris_marina_MBIC11017 1 1
Synechocystis_sp._PCC_6803 1 1
Microcoleus_sp._PCC_7113 4 4
Trichodesmium_erythraeum_IMS101 6 5
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeocapsa_sp._PCC_7428 3 3
cyanobacterium_UCYN-A 1 1
Microcystis_aeruginosa_NIES-843 1 1
Gloeobacter_violaceus_PCC_7421 4 4
Rivularia_sp._PCC_7116 5 5
Calothrix_sp._PCC_7507 4 4
Anabaena_variabilis_ATCC_29413 5 4
'Nostoc_azollae'_0708 1 1
Nostoc_sp._PCC_7107 2 2
Nostoc_punctiforme_PCC_73102 5 5
Nostoc_sp._PCC_7120 4 4
Nostoc_sp._PCC_7524 3 3
Anabaena_sp._90 2 2
Conexibacter_woesei_DSM_14684 6 6
Acidimicrobium_ferrooxidans_DSM_10331 3 3
Thermobispora_bispora_DSM_43833 1 1
Nakamurella_multipartita_DSM_44233 4 4
Acidothermus_cellulolyticus_11B 1 1
Modestobacter_marinus 3 3
Blastococcus_saxobsidens_DD2 1 1
Kineococcus_radiotolerans_SRS30216 3 3
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 3 3
Frankia_symbiont_of_Datisca_glomerata 4 4
Frankia_sp._EAN1pec 7 7
Frankia_alni_ACN14a 8 8
Thermobifida_fusca_YX 2 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 3 3
Thermomonospora_curvata_DSM_43183 3 3
Streptosporangium_roseum_DSM_43021 2 2
Kitasatospora_setae_KM-6054 2 2
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 3 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 3 3
Streptomyces_bingchenggensis_BCW-1 3 3
Streptomyces_violaceusniger_Tu_4113 5 5
Streptomyces_avermitilis_MA-4680 4 4
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 3 3
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 4 4
Actinosynnema_mirum_DSM_43827 4 4
Saccharomonospora_viridis_DSM_43017 2 2
Pseudonocardia_dioxanivorans_CB1190 3 3
Saccharopolyspora_erythraea_NRRL_2338 5 5
Amycolatopsis_mediterranei_U32 5 5
Kribbella_flavida_DSM_17836 3 3
Nocardioides_sp._JS614 1 1
Microlunatus_phosphovorus_NM-1 4 4
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 2 2
Verrucosispora_maris_AB-18-032 3 3
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 4 4
Actinoplanes_sp._SE50/110 4 4
Actinoplanes_missouriensis_431 6 6
Tsukamurella_paurometabola_DSM_20162 2 2
Gordonia_polyisoprenivorans_VH2 2 2
Gordonia_bronchialis_DSM_43247 2 2
Rhodococcus_jostii_RHA1 8 8
Rhodococcus_equi_103S 1 1
Rhodococcus_opacus_B4 3 3
Rhodococcus_erythropolis_PR4 5 5
Nocardia_cyriacigeorgica_GUH-2 3 3
Nocardia_farcinica_IFM_10152 2 2
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_sp._JLS 2 2
Mycobacterium_intracellulare_ATCC_13950 3 3
Mycobacterium_avium_104 2 2
Mycobacterium_vanbaalenii_PYR-1 5 5
Mycobacterium_canettii_CIPT_140010059 2 2
Mycobacterium_africanum_GM041182 2 2
Mycobacterium_tuberculosis_KZN_1435 2 2
Mycobacterium_tuberculosis 2 2
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 2 2
Mycobacterium_rhodesiae_NBB3 3 3
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_chubuense_NBB4 2 2
Mycobacterium_marinum_M 5 5
Corynebacterium_resistens_DSM_45100 1 1
Corynebacterium_aurimucosum_ATCC_700975 2 2
Corynebacterium_jeikeium_K411 1 1
Corynebacterium_variabile_DSM_44702 1 1
Corynebacterium_diphtheriae_NCTC_13129 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Leifsonia_xyli_subsp._xyli_str._CTCB07 1 1
Microbacterium_testaceum_StLB037 1 1
Jonesia_denitrificans_DSM_20603 1 1
Intrasporangium_calvum_DSM_43043 2 2
Brachybacterium_faecium_DSM_4810 1 1
Isoptericola_variabilis_225 3 3
Xylanimonas_cellulosilytica_DSM_15894 2 2
Cellulomonas_flavigena_DSM_20109 3 3
Cellulomonas_fimi_ATCC_484 1 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_aurescens_TC1 1 1
Arthrobacter_arilaitensis_Re117 1 1
Kocuria_rhizophila_DC2201 2 2
Rothia_mucilaginosa_DY-18 1 1
Rothia_dentocariosa_ATCC_17931 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 1 1
Renibacterium_salmoninarum_ATCC_33209 1 1
Micrococcus_luteus_NCTC_2665 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 6 6
Dehalococcoides_ethenogenes_195 1 1
Anaerolinea_thermophila_UNI-1 3 3
Thermomicrobium_roseum_DSM_5159 3 3
Sphaerobacter_thermophilus_DSM_20745 2 2
Herpetosiphon_aurantiacus_DSM_785 5 5
Roseiflexus_sp._RS-1 6 5
Roseiflexus_castenholzii_DSM_13941 4 4
Chloroflexus_sp._MS-G 4 3
Chloroflexus_sp._Y-400-fl 7 7
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 7 7
Truepera_radiovictrix_DSM_17093 4 4
Deinococcus_gobiensis_I-0 2 2
Deinococcus_deserti_VCD115 3 3
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 1 1
Oceanithermus_profundus_DSM_14977 3 3
Marinithermus_hydrothermalis_DSM_14884 2 2
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 3 2
Thermus_scotoductus_SA-01 3 3
Symbiobacterium_thermophilum_IAM_14863 1 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 2 2
Clostridium_clariflavum_DSM_19732 1 1
Eubacterium_siraeum 1 1
Clostridium_thermocellum_ATCC_27405 3 3
Ruminococcus_bromii 1 1
Sulfobacillus_acidophilus_DSM_10332 2 2
butyrate-producing_bacterium_SS3/4 1 1
Thermincola_potens_JR 13 13
Desulfosporosinus_orientis_DSM_765 2 1
Desulfotomaculum_acetoxidans_DSM_771 2 2
Eubacterium_eligens_ATCC_27750 2 2
Clostridium_phytofermentans_ISDg 1 1
[Ruminococcus]_obeum 1 1
Eubacterium_rectale_ATCC_33656 1 1
Roseburia_intestinalis 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Heliobacterium_modesticaldum_Ice1 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1
Clostridium_novyi_NT 1 1
Clostridium_kluyveri_DSM_555 1 1
Clostridium_beijerinckii_NCIMB_8052 2 2
Clostridium_cellulovorans_743B 2 2
Clostridium_botulinum_A_str._ATCC_3502 1 1
Mahella_australiensis_50-1_BON 3 3
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 2 2
Caldicellulosiruptor_owensensis_OL 3 3
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1 1
Caldicellulosiruptor_bescii_DSM_6725 1 1
Carboxydothermus_hydrogenoformans_Z-2901 2 2
Halanaerobium_hydrogeniformans 1 1
Exiguobacterium_sp._MH3 2 2
Exiguobacterium_sp._AT1b 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_mucilaginosus_3016 6 6
Bacillus_selenitireducens_MLS10 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Geobacillus_kaustophilus_HTA426 1 1
Bacillus_sp._1NLA3E 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_megaterium_DSM_319 1 1
Candidatus_Cloacamonas_acidaminovorans 2 2
Gemmatimonas_aurantiaca_T-27 2 2
Melioribacter_roseus_P3M 1 1
Ignavibacterium_album_JCM_16511 10 10
Chlorobium_chlorochromatii_CaD3 3 2
Chlorobium_phaeobacteroides_DSM_266 2 1
Chloroherpeton_thalassium_ATCC_35110 3 3
Prosthecochloris_aestuarii_DSM_271 1 1
Haliscomenobacter_hydrossis_DSM_1100 7 7
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 12 12
Chitinophaga_pinensis_DSM_2588 5 5
Salinibacter_ruber_M8 3 3
Rhodothermus_marinus_DSM_4252 4 4
Flexibacter_litoralis_DSM_6794 5 5
Belliella_baltica_DSM_15883 2 2
Cyclobacterium_marinum_DSM_745 5 5
Fibrella_aestuarina 4 4
Leadbetterella_byssophila_DSM_17132 1 1
Dyadobacter_fermentans_DSM_18053 6 5
Cytophaga_hutchinsonii_ATCC_33406 9 8
Spirosoma_linguale_DSM_74 13 13
Runella_slithyformis_DSM_19594 3 3
Parabacteroides_distasonis_ATCC_8503 2 2
Tannerella_forsythia_ATCC_43037 2 2
Paludibacter_propionicigenes_WB4 4 4
Odoribacter_splanchnicus_DSM_20712 5 5
Bacteroides_sp._CF50 2 2
Prevotella_denticola_F0289 2 2
Prevotella_ruminicola_23 5 5
Porphyromonas_asaccharolytica_DSM_20707 3 3
Porphyromonas_gingivalis_ATCC_33277 1 1
Alistipes_finegoldii_DSM_17242 2 2
Bacteroides_salanitronis_DSM_18170 3 3
Bacteroides_helcogenes_P_36-108 3 3
Bacteroides_vulgatus_ATCC_8482 3 3
Bacteroides_thetaiotaomicron_VPI-5482 9 9
Bacteroides_fragilis_YCH46 2 2
Pedobacter_saltans_DSM_12145 9 9
Solitalea_canadensis_DSM_3403 1 1
Pedobacter_heparinus_DSM_2366 7 6
Sphingobacterium_sp._21 3 3
Fluviicola_taffensis_DSM_16823 12 11
Owenweeksia_hongkongensis_DSM_17368 8 8
Zunongwangia_profunda_SM-A87 3 3
Krokinobacter_sp._4H-3-7-5 7 6
Gramella_forsetii_KT0803 2 2
Lacinutrix_sp._5H-3-7-4 3 3
Maribacter_sp._HTCC2170 3 3
Robiginitalea_biformata_HTCC2501 3 3
Croceibacter_atlanticus_HTCC2559 2 2
Aequorivita_sublithincola_DSM_14238 3 3
Zobellia_galactanivorans 6 6
Cellulophaga_algicola_DSM_14237 2 2
Cellulophaga_lytica_DSM_7489 4 4
Flavobacteriaceae_bacterium_3519-10 3 3
Polaribacter_sp._MED152 1 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_indicum_GPTSA100-9 4 4
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_branchiophilum_FL-15 4 4
Flavobacterium_columnare_ATCC_49512 2 2
Flavobacterium_johnsoniae_UW101 8 7
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Phycisphaera_mikurensis_NBRC_102666 1 1
Isosphaera_pallida_ATCC_43644 7 7
Planctomyces_brasiliensis_DSM_5305 2 2
Planctomyces_limnophilus_DSM_3776 4 4
Rhodopirellula_baltica_SH_1 4 4
Pirellula_staleyi_DSM_6068 7 7
Methylacidiphilum_infernorum_V4 1 1
Opitutus_terrae_PB90-1 17 9
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Turneriella_parva_DSM_21527 4 4
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 4 4
Leptospira_interrogans_serovar_Lai_str._IPAV 9 9
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Brachyspira_murdochii_DSM_12563 2 2
Brachyspira_intermedia_PWS/A 2 2
Brachyspira_pilosicoli_95/1000 2 2
Brachyspira_hyodysenteriae_WA1 2 2
Borrelia_garinii_PBi 1 1
Borrelia_bissettii_DN127 1 1
Borrelia_afzelii_PKo 1 1
Borrelia_burgdorferi_B31 1 1
Borrelia_recurrentis_A1 1 1
Borrelia_duttonii_Ly 1 1
Borrelia_crocidurae_str._Achema 1 1
Borrelia_turicatae_91E135 2 2
Borrelia_hermsii_DAH 1 1
Spirochaeta_smaragdinae_DSM_11293 3 2
Sphaerochaeta_coccoides_DSM_17374 1 1
Spirochaeta_caldaria_DSM_7334 3 3
Treponema_azotonutricium_ZAS-9 2 2
Treponema_primitia_ZAS-2 2 2
Treponema_brennaborense_DSM_12168 1 1
Treponema_paraluiscuniculi_Cuniculi_A 1 1
Treponema_succinifaciens_DSM_2489 3 3
Treponema_pallidum_subsp._pallidum_SS14 2 2
Treponema_denticola_ATCC_35405 2 2
Spirochaeta_africana_DSM_8902 3 3
Spirochaeta_thermophila_DSM_6192 1 1
Thermodesulfatator_indicus_DSM_15286 2 2
Denitrovibrio_acetiphilus_DSM_12809 1 1
Deferribacter_desulfuricans_SSM1 1 1
Flexistipes_sinusarabici_DSM_4947 2 2
Marinitoga_piezophila_KA3 1 1
Petrotoga_mobilis_SJ95 2 2
Mesotoga_prima_MesG1.Ag.4.2 3 3
Fervidobacterium_pennivorans_DSM_9078 2 2
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermosipho_melanesiensis_BI429 3 3
Thermosipho_africanus_TCF52B 2 2
Thermotoga_thermarum_DSM_5069 1 1
Thermotoga_naphthophila_RKU-10 1 1
Thermotoga_petrophila_RKU-1 1 1
Thermovibrio_ammonificans_HB-1 2 2
Desulfurobacterium_thermolithotrophum_DSM_11699 1 1
Persephonella_marina_EX-H1 2 2
Thermocrinis_albus_DSM_14484 3 3
Hydrogenobacter_thermophilus_TK-6 2 2
Elusimicrobium_minutum_Pei191 1 1
Dictyoglomus_turgidum_DSM_6724 1 1
Caldisericum_exile_AZM16c01 4 2
Candidatus_Chloracidobacterium_thermophilum_B 6 5
Candidatus_Solibacter_usitatus_Ellin6076 20 16
Granulicella_tundricola_MP5ACTX9 10 8
Granulicella_mallensis_MP5ACTX8 25 21
Candidatus_Koribacter_versatilis_Ellin345 6 6
Terriglobus_saanensis_SP1PR4 9 8
Terriglobus_roseus_DSM_18391 3 3
Acidobacterium_capsulatum_ATCC_51196 3 2
Candidatus_Nitrospira_defluvii 4 3
Leptospirillum_ferrooxidans_C2-3 1 1
Leptotrichia_buccalis_C-1013-b 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bacteriovorax_marinus_SJ 2 2
Bdellovibrio_bacteriovorus_HD100 4 3
Nitratifractor_salsuginis_DSM_16511 1 1
Arcobacter_sp._L 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Campylobacter_lari_RM2100 1 1
Campylobacter_sp._03-427 1 1
Helicobacter_cetorum_MIT_00-7128 1 1
Sulfurovum_sp._NBC37-1 1 1
Syntrophus_aciditrophicus_SB 1 1
Desulfomonile_tiedjei_DSM_6799 2 2
Syntrophobacter_fumaroxidans_MPOB 9 6
Desulfurivibrio_alkaliphilus_AHT2 4 4
Desulfotalea_psychrophila_LSv54 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 5 4
Desulfococcus_oleovorans_Hxd3 5 4
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Desulfovibrio_africanus_str._Walvis_Bay 2 1
Geobacter_daltonii_FRC-32 5 5
Geobacter_sp._M21 3 3
Geobacter_uraniireducens_Rf4 7 7
Geobacter_lovleyi_SZ 1 1
Geobacter_bemidjiensis_Bem 3 3
Geobacter_sulfurreducens_KN400 5 5
Geobacter_metallireducens_GS-15 3 3
Pelobacter_propionicus_DSM_2379 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Haliangium_ochraceum_DSM_14365 12 11
Sorangium_cellulosum_'So_ce_56' 33 30
Anaeromyxobacter_sp._Fw109-5 4 4
Anaeromyxobacter_dehalogenans_2CP-1 5 5
Stigmatella_aurantiaca_DW4/3-1 15 15
Corallococcus_coralloides_DSM_2259 11 11
Myxococcus_xanthus_DK_1622 9 9
Myxococcus_fulvus_HW-1 8 8
Azoarcus_sp._KH32C 5 5
Azoarcus_sp._BH72 1 1
Aromatoleum_aromaticum_EbN1 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 4 4
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Leptothrix_cholodnii_SP-6 4 4
Burkholderia_phytofirmans_PsJN 2 2
Burkholderia_phymatum_STM815 2 2
Burkholderia_xenovorans_LB400 5 5
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_solanacearum_CFBP2957 2 2
Burkholderia_sp._CCGE1002 3 3
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_vietnamiensis_G4 4 4
Burkholderia_gladioli_BSR3 1 1
Burkholderia_glumae_BGR1 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Alicycliphilus_denitrificans_K601 1 1
Ramlibacter_tataouinensis_TTB310 2 2
Delftia_sp._Cs1-4 2 2
Delftia_acidovorans_SPH-1 1 1
Polaromonas_sp._JS666 2 2
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Rhodoferax_ferrireducens_T118 3 3
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Collimonas_fungivorans_Ter331 2 2
Advenella_kashmirensis_WT001 2 2
Thiobacillus_denitrificans_ATCC_25259 1 1
Nitrosospira_multiformis_ATCC_25196 3 2
Nitrosomonas_sp._Is79A3 1 1
Sideroxydans_lithotrophicus_ES-1 2 1
Methylotenera_versatilis_301 1 1
Magnetococcus_marinus_MC-1 1 1
Asticcacaulis_excentricus_CB_48 1 1
Caulobacter_sp._K31 1 1
Phenylobacterium_zucineum_HLK1 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Sphingomonas_wittichii_RW1 1 1
Maricaulis_maris_MCS10 2 2
Dinoroseobacter_shibae_DFL_12 1 1
Phaeobacter_gallaeciensis_2.10 1 1
Pseudovibrio_sp._FO-BEG1 3 3
Jannaschia_sp._CCS1 1 1
Ruegeria_pomeroyi_DSS-3 1 1
Ketogulonicigenium_vulgare_Y25 1 1
Roseobacter_litoralis_Och_149 1 1
Roseobacter_denitrificans_OCh_114 1 1
Rhodobacter_sphaeroides_ATCC_17029 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Paracoccus_denitrificans_PD1222 1 1
Tistrella_mobilis_KA081020-065 1 1
Azospirillum_brasilense_Sp245 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_621H 1 1
Acetobacter_pasteurianus_IFO_3283-01 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
Starkeya_novella_DSM_506 1 1
Methylobacterium_chloromethanicum_CM4 2 2
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 3 3
Methylobacterium_nodulans_ORS_2060 1 1
Methylobacterium_radiotolerans_JCM_2831 3 3
Parvibaculum_lavamentivorans_DS-1 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Sinorhizobium_fredii_NGR234 2 2
Rhizobium_leguminosarum_bv._viciae_3841 2 2
Agrobacterium_tumefaciens_str._C58 1 1
Mesorhizobium_sp._BNC1 2 2
Mesorhizobium_opportunistum_WSM2075 1 1
Methylocella_silvestris_BL2 4 4
Beijerinckia_indica_subsp._indica_ATCC_9039 2 2
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 1 1
Rhodopseudomonas_palustris_BisA53 1 1
Bradyrhizobium_japonicum_USDA_110 7 7
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 1 1
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 1 1
Cellvibrio_japonicus_Ueda107 1 1
Oceanimonas_sp._GK1 1 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 2 2
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 2 1
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 2 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 3 3
Shewanella_pealeana_ATCC_700345 2 2
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 2 2
Shewanella_sp._MR-4 2 2
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Colwellia_psychrerythraea_34H 4 4
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 3 3
Pseudoalteromonas_haloplanktis_TAC125 2 2
Glaciecola_sp._4H-3-7+YE-5 3 3
Glaciecola_nitratireducens_FR1064 1 1
Marinobacter_adhaerens_HP15 1 1
Marinobacter_sp._BSs20148 2 2
Alteromonas_sp._SN2 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_mediterranea_MMB-1 1 1
Methylococcus_capsulatus_str._Bath 1 1
Rhodanobacter_denitrificans 2 2
Frateuria_aurantia_DSM_6220 4 4
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 2 2
Xanthomonas_axonopodis_pv._citri_str._306 2 2
Xanthomonas_albilineans_GPE_PC73 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1
Xanthomonas_campestris_pv._campestris_str._B100 2 2
Halothiobacillus_neapolitanus_c2 2 2
Thioalkalivibrio_sp._K90mix 2 2
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 2 2
Nitrosococcus_oceani_ATCC_19707 2 2
gamma_proteobacterium_HdN1 1 1
Photorhabdus_asymbiotica 1 1
Serratia_sp._ATCC_39006 3 3
Serratia_proteamaculans_568 1 1
Dickeya_zeae_Ech1591 2 2
Pantoea_sp._At-9b 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Salmonella_bongori_NCTC_12419 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Citrobacter_koseri_ATCC_BAA-895 1 1
Azotobacter_vinelandii_DJ 3 3
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 2 2
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 3 3
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_stutzeri_A1501 2 2
Pseudomonas_fulva_12-X 2 2
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 2 2
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 4 4
Pseudomonas_sp._VLB120 2 2
Psychrobacter_sp._G 1 1
Psychrobacter_sp._PRwf-1 1 1
Psychrobacter_cryohalolentis_K5 1 1
Moraxella_catarrhalis_RH4 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Methylophaga_sp._JAM1 2 2
Candidatus_Caldiarchaeum_subterraneum 1 1
Cenarchaeum_symbiosum_A 6 5
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 2 2
Pyrolobus_fumarii_1A 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Sulfolobus_tokodaii_str._7 1 1
Pyrobaculum_sp._1860 1 1
Thermoproteus_uzoniensis_768-20 1 1
halophilic_archaeon_DL31 2 2
Methanocella_arvoryzae_MRE50 3 3
Methanocella_conradii_HZ254 1 1
Methanocella_paludicola_SANAE 2 2
Methanosaeta_harundinacea_6Ac 2 2
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 2 1
Methanohalobium_evestigatum_Z-7303 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanosphaerula_palustris_E1-9c 10 8
Methanoregula_boonei_6A8 2 2
Methanospirillum_hungatei_JF-1 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 3 3
Thermococcus_kodakarensis_KOD1 1 1
Pyrococcus_abyssi_GE5 1 1
Halopiger_xanaduensis_SH-6 3 3
Haloterrigena_turkmenica_DSM_5511 3 3
Natrinema_sp._J7-2 1 1
Haloquadratum_walsbyi_DSM_16790 3 3
Halogeometricum_borinquense_DSM_11551 2 2
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 4 4
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 3 3
Methanococcus_voltae_A3 1 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1 1
Acholeplasma_laidlawii_PG-8A 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   20 18
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   21 21
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   16 16
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   14 14
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_H538.4_ 1 1
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 1 1
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7 7
Hordeum_vulgare_22   (Domesticated barley)   12 12
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   11 11
Neospora_caninum_Nc-Liverpool_6.2 3 3
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 4 4
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Cyanobium_gracile_PCC_6307 1 1
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Synechococcus_sp._CC9902 1 1
Synechococcus_sp._CC9605 1 1
Prochlorococcus_marinus_str._MIT_9313 1 1
Prochlorococcus_marinus_str._MIT_9303 1 1
Crinalium_epipsammum_PCC_9333 3 3
Oscillatoria_nigro-viridis_PCC_7112 2 2
Oscillatoria_acuminata_PCC_6304 9 8
Arthrospira_platensis_NIES-39 15 13
Cyanothece_sp._PCC_7822 4 4
Cyanothece_sp._PCC_7424 4 4
Cyanothece_sp._ATCC_51142 2 2
Cyanothece_sp._PCC_8801 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 5 4
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 3 3
Cylindrospermum_stagnale_PCC_7417 5 5
Anabaena_cylindrica_PCC_7122 6 5
Spiroplasma_syrphidicola_EA-1 3 3
Spiroplasma_chrysopicola_DF-1 5 5
Frankia_sp._EuI1c 4 4
Frankia_sp._CcI3 4 4
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 3 3
Streptomyces_rapamycinicus_NRRL_5491 5 5
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 2 2
Streptomyces_collinus_Tu_365 5 5
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 4 4
Saccharothrix_espanaensis_DSM_44229 6 6
Amycolatopsis_mediterranei_RB 5 5
Amycolatopsis_mediterranei_S699 5 5
Amycolatopsis_mediterranei_S699 5 5
Amycolatopsis_orientalis_HCCB10007 1 1
Actinoplanes_friuliensis_DSM_7358 3 3
Rhodococcus_pyridinivorans_SB3094 1 1
Rhodococcus_erythropolis_CCM2595 4 4
Nocardia_brasiliensis_ATCC_700358 3 3
Mycobacterium_sp._MOTT36Y 1 1
Mycobacterium_sp._JDM601 2 2
Mycobacterium_liflandii_128FXT 3 3
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 2 2
Mycobacterium_yongonense_05-1390 2 2
Mycobacterium_intracellulare_MOTT-64 2 2
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 2 2
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2 2
Mycobacterium_avium_subsp._paratuberculosis_K-10 2 2
Mycobacterium_canettii_CIPT_140070017 2 2
Mycobacterium_canettii_CIPT_140060008 2 2
Mycobacterium_canettii_CIPT_140070008 2 2
Mycobacterium_canettii_CIPT_140070010 2 2
Mycobacterium_tuberculosis_EAI5/NITR206 2 2
Mycobacterium_tuberculosis_EAI5 2 2
Mycobacterium_tuberculosis_CAS/NITR204 2 2
Mycobacterium_tuberculosis_str._Beijing/NITR203 2 2
Mycobacterium_tuberculosis_UT205 2 2
Mycobacterium_tuberculosis_RGTB423 1 1
Mycobacterium_tuberculosis_RGTB327 2 2
Mycobacterium_tuberculosis_CTRI-2 2 2
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 2 2
Mycobacterium_tuberculosis_KZN_605 2 2
Mycobacterium_tuberculosis_KZN_4207 2 2
Mycobacterium_tuberculosis_CCDC5180 2 2
Mycobacterium_tuberculosis_CCDC5079 2 2
Mycobacterium_tuberculosis_CCDC5079 2 2
Mycobacterium_tuberculosis_H37Ra 2 2
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1 1
Mycobacterium_tuberculosis_str._Haarlem 2 2
Mycobacterium_tuberculosis_F11 2 2
Mycobacterium_tuberculosis_H37Rv 2 2
Mycobacterium_tuberculosis_CDC1551 2 2
Mycobacterium_bovis_AF2122/97 2 2
Mycobacterium_bovis_BCG_str._Korea_1168P 2 2
Mycobacterium_bovis_BCG_str._Mexico 2 2
Mycobacterium_bovis_BCG_str._Tokyo_172 2 2
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_kansasii_ATCC_12478 7 7
Corynebacterium_maris_DSM_45190 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_argentoratense_DSM_44202 1 1
Corynebacterium_callunae_DSM_20147 1 1
Corynebacterium_diphtheriae_INCA_402 1 1
Corynebacterium_diphtheriae_HC02 1 1
Corynebacterium_diphtheriae_31A 1 1
Bifidobacterium_asteroides_PRL2011 1 1
Bifidobacterium_bifidum_BGN4 1 1
Chthonomonas_calidirosea_T49 3 3
Deinococcus_peraridilitoris_DSM_19664 3 3
Thermus_oshimai_JL-2 2 2
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_HB8 3 3
Eubacterium_siraeum_V10Sc8a 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Sulfobacillus_acidophilus_TPY 2 2
Clostridium_acidurici_9a 1 1
Desulfosporosinus_meridiei_DSM_13257 6 2
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Roseburia_intestinalis_XB6B4 3 3
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1 1
Clostridium_saccharobutylicum_DSM_13864 2 2
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 2 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 2 2
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermacetogenium_phaeum_DSM_12270 1 1
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_DPC_6026 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Exiguobacterium_antarcticum_B7 1 1
Thermobacillus_composti_KWC4 2 2
Paenibacillus_sp._Y412MC10 5 5
Paenibacillus_mucilaginosus_KNP414 6 6
Paenibacillus_mucilaginosus_K02 6 6
Geobacillus_sp._Y4.1MC1 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1 1
Bacillus_licheniformis_9945A 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_infantis_NRRL_B-14911 2 2
Chlorobium_phaeobacteroides_BS1 1 1
Salinibacter_ruber_DSM_13855 3 3
Rhodothermus_marinus_SG0.5JP17-172 4 4
Echinicola_vietnamensis_DSM_17526 1 1
Emticicia_oligotrophica_DSM_17448 6 6
Prevotella_sp._oral_taxon_299_str._F0039 1 1
Prevotella_dentalis_DSM_3688 3 3
Porphyromonas_gingivalis_TDC60 1 1
Porphyromonas_gingivalis_W83 1 1
Bacteroides_xylanisolvens_XB1A 2 2
Bacteroides_fragilis_638R 3 3
Bacteroides_fragilis_NCTC_9343 7 7
Nonlabens_dokdonensis_DSW-6 3 3
Psychroflexus_torquis_ATCC_700755 2 2
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Chlamydophila_pneumoniae_LPCoLN 1 1
Singulisphaera_acidiphila_DSM_18658 5 5
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 4 4
Leptospira_interrogans_serovar_Lai_str._56601 9 9
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 8 8
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Brachyspira_pilosicoli_WesB 3 3
Brachyspira_pilosicoli_B2904 3 3
Brachyspira_pilosicoli_P43/6/78 2 2
Borrelia_garinii_NMJW1 1 1
Borrelia_garinii_BgVir 1 1
Borrelia_afzelii_HLJ01 1 1
Borrelia_afzelii_PKo 1 1
Borrelia_burgdorferi_CA382 1 1
Borrelia_burgdorferi_JD1 1 1
Borrelia_burgdorferi_N40 1 1
Borrelia_burgdorferi_ZS7 1 1
Treponema_pedis_str._T_A4 1 1
Treponema_pallidum_str._Fribourg-Blanc 1 1
Treponema_pallidum_subsp._pertenue_str._Gauthier 1 1
Treponema_pallidum_subsp._pertenue_str._CDC2 1 1
Treponema_pallidum_subsp._pertenue_str._SamoaD 1 1
Treponema_pallidum_subsp._pallidum_str._Mexico_A 1 1
Treponema_pallidum_subsp._pallidum_str._Chicago 1 1
Treponema_pallidum_subsp._pallidum_DAL-1 1 1
Treponema_pallidum_subsp._pallidum_str._Nichols 1 1
Hydrogenobacter_thermophilus_TK-6 2 2
Leptospirillum_ferriphilum_ML-04 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_exovorus_JSS 2 1
Bdellovibrio_bacteriovorus_str._Tiberius 4 3
Campylobacter_coli_76339 1 1
Campylobacter_coli_15-537360 1 1
Campylobacter_coli_CVM_N29710 1 1
Helicobacter_pylori_BM012S 1 1
Helicobacter_pylori_BM012A 1 1
Helicobacter_pylori_Aklavik86 1 1
Helicobacter_pylori_P12 1 1
Desulfocapsa_sulfexigens_DSM_10523 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 3 2
Desulfovibrio_desulfuricans_ND132 1 1
Geobacter_sp._M18 6 6
Geobacter_sulfurreducens_PCA 5 5
Sorangium_cellulosum_So0157-2 25 24
Anaeromyxobacter_sp._K 7 7
Anaeromyxobacter_dehalogenans_2CP-C 4 4
Myxococcus_stipitatus_DSM_14675 9 9
Burkholderia_phenoliruptrix_BR3459a 3 3
Ralstonia_solanacearum_FQY_4 2 2
Ralstonia_solanacearum_Po82 2 2
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 3 3
Ralstonia_solanacearum_GMI1000 2 2
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1 1
Burkholderia_sp._YI23 2 2
Burkholderia_sp._CCGE1003 3 3
Burkholderia_sp._KJ006 1 1
Burkholderia_thailandensis_MSMB121 3 3
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_lata 1 1
Burkholderia_ambifaria_MC40-6 2 2
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_cepacia_GG4 1 1
Variovorax_paradoxus_B4 3 3
Nitrosomonas_sp._AL212 2 2
Phaeobacter_gallaeciensis_DSM_17395 2 2
Phaeobacter_gallaeciensis_DSM_26640 2 2
Leisingera_methylohalidivorans_DSM_14336 1 1
Rhodobacter_sphaeroides_KD131 2 2
Rhodobacter_sphaeroides_ATCC_17025 1 1
Rhodobacter_sphaeroides_2.4.1 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 2 2
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_H24 1 1
Acetobacter_pasteurianus_386B 2 2
Acetobacter_pasteurianus_IFO_3283-12 1 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1 1
Acetobacter_pasteurianus_IFO_3283-32 1 1
Acetobacter_pasteurianus_IFO_3283-26 1 1
Acetobacter_pasteurianus_IFO_3283-22 1 1
Acetobacter_pasteurianus_IFO_3283-07 1 1
Acetobacter_pasteurianus_IFO_3283-03 1 1
Methylobacterium_extorquens_DM4 2 2
Methylobacterium_extorquens_PA1 1 1
Brucella_ceti_TE28753-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Sinorhizobium_fredii_USDA_257 2 2
Sinorhizobium_fredii_HH103 1 1
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2 2
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Bradyrhizobium_sp._S23321 1 1
Bradyrhizobium_sp._BTAi1 2 2
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 3 3
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Vibrio_parahaemolyticus_BB22OP 2 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 2 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_baltica_BA175 2 2
Shewanella_baltica_OS678 2 2
Shewanella_baltica_OS117 2 2
Shewanella_baltica_OS223 2 2
Shewanella_baltica_OS195 2 2
Shewanella_baltica_OS155 2 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_str._'English_Channel_615' 1 1
Alteromonas_macleodii_AltDE1 1 1
Alteromonas_macleodii_str._'English_Channel_673' 4 4
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 5 5
Alteromonas_macleodii_str._'Black_Sea_11' 3 3
Alteromonas_macleodii_ATCC_27126 2 2
Alcanivorax_dieselolei_B5 3 3
Stenotrophomonas_maltophilia_D457 2 2
Stenotrophomonas_maltophilia_JV3 2 2
Stenotrophomonas_maltophilia_R551-3 3 3
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 2 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 2 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 2 2
Thioalkalivibrio_nitratireducens_DSM_14787 3 3
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_marcescens_WW4 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Dickeya_dadantii_Ech586 1 1
Candidatus_Blochmannia_chromaiodes_str._640 1 1
Salmonella_bongori_N268-08 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_042 1 1
Escherichia_coli_UMN026 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 2 2
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Azotobacter_vinelandii_CA6 3 3
Azotobacter_vinelandii_CA 3 3
Pseudomonas_denitrificans_ATCC_13867 3 3
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_stutzeri_CCUG_29243 2 2
Pseudomonas_stutzeri_DSM_10701 2 2
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 2 2
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 2 2
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 2 2
Pseudomonas_protegens_CHA0 2 2
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 2 2
Pseudomonas_fluorescens_A506 2 2
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_resinovorans_NBRC_106553 3 3
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 3 3
Pseudomonas_aeruginosa_MTB-1 3 3
Pseudomonas_aeruginosa_LES431 3 3
Pseudomonas_aeruginosa_RP73 3 3
Pseudomonas_aeruginosa_B136-33 2 2
Pseudomonas_aeruginosa_PA1R 3 3
Pseudomonas_aeruginosa_PA1 3 3
Pseudomonas_aeruginosa_DK2 3 3
Pseudomonas_aeruginosa_NCGM2.S1 3 3
Pseudomonas_aeruginosa_M18 3 3
Pseudomonas_aeruginosa_LESB58 3 3
Pseudomonas_aeruginosa_PA7 3 3
Pseudomonas_aeruginosa_PAO1 3 3
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Acinetobacter_baumannii_AB307-0294 1 1
Acinetobacter_baumannii_AYE 1 1
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_junii__SH205 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 2 2
Sulfolobus_islandicus_L.D.8.5 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_litoralis_DSM_5473 2 2
Halovivax_ruber_XH-70 2 2
Natrinema_pellirubrum_DSM_15624 2 2
Haloquadratum_walsbyi_C23 3 3
Natronomonas_moolapensis_8.8.11 1 1
Methanococcus_maripaludis_X1 2 2
Methanococcus_maripaludis_S2 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   15 15
Pan_troglodytes_69_2.1.4   (Chimpanzee)   13 12
Gorilla_gorilla_69_3.1   (Western gorilla)   15 15
Pongo_abelii_69_2   (Sumatran orangutan)   15 15
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   15 15
Macaca_mulatta_69_1   (Rhesus monkey)   14 14
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   14 13
Otolemur_garnettii_69_3   (Small-eared galago)   15 15
Microcebus_murinus_69_1   (Gray mouse lemur)   9 9
Rattus_norvegicus_69_3.4   (Norway rat)   15 15
Mus_musculus_69_38   (House mouse)   15 14
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10 10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   13 13
Cavia_porcellus_69_3   (Domestic guinea pig)   14 13
Oryctolagus_cuniculus_69_2   (Rabbit)   15 15
Ochotona_princeps_69   (American pika)   10 10
Tupaia_belangeri_69   (Northern tree shrew)   6 6
Sus_scrofa_69_10.2   (Pig)   13 12
Bos_taurus_69_3.1   (Cattle)   15 15
Vicugna_pacos_69_1   (Alpaca)   5 5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12 12
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15 15
Ailuropoda_melanoleuca_69_1   (Giant panda)   15 15
Canis_familiaris_69_3.1   (Dog)   13 13
Felis_catus_69   (Domestic cat)   7 7
Equus_caballus_69_2   (Horse)   13 13
Myotis_lucifugus_69_2.0   (Little brown bat)   12 12
Pteropus_vampyrus_69_1   (Large flying fox)   12 12
Sorex_araneus_69_1   (European shrew)   6 6
Erinaceus_europaeus_69   (Western European hedgehog)   10 10
Procavia_capensis_69_1   (Cape rock hyrax)   10 10
Loxodonta_africana_69_3   (African savanna elephant)   14 14
Echinops_telfairi_69   (Small Madagascar hedgehog)   10 9
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6 6
Macropus_eugenii_69_1.0   (Tammar wallaby)   13 13
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10 10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   14 13
Ornithorhynchus_anatinus_69_5   (Platypus)   16 15
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   10 10
Gallus_gallus_69_2   (Chicken)   12 12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   15 13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   14 13
Anolis_carolinensis_69_2.0   (Green anole)   12 11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   11 11
Latimeria_chalumnae_69_1   (Coelacanth)   11 11
Gadus_morhua_69_1   (Atlantic cod)   16 16
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   17 16
Takifugu_rubripes_69_4   (Torafugu)   12 12
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14 14
Oryzias_latipes_69_1   (Japanese medaka)   15 14
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   16 15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   15 15
Danio_rerio_69_9   (Zebrafish)   18 18
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   10 10
Drosophila_melanogaster_69_5   (Fruit fly)   10 10
Caenorhabditis_elegans_69_215   (Roundworm)   12 12
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   8 8

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   39 39
Homo_sapiens__(NCBI_version)   (Human)   25 25
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   15 14
Heliconius_numata__(Incomplete) 6 6
Loa_loa_v3.3_(Request)   (Eye worm)   8 8
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10 10
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   8 8
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Lotus_japonicus__(Early_assembly) 5 5
Malus_x_domestica_(Duplicate)   (Apple)   14 14
Ricinus_communis__(Early_assembly)   (Castor bean)   9 9
Nicotiana_benthamiana_0.4.4_(Early_draft) 16 16
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   7 7
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8 8
Phoenix_dactylifera__(Early_draft)   (Date palm)   5 5
Acholeplasma_laidlawii_PG-8A_(duplicate) 1 1
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 2 2
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 46 45
UniProt__viral_sequences_(Viral) 6 6
STRING_v9.0.5_(STRING) 2319 2254
Uniprot_2018_03_genome 40764 39357
NCBI_2017_08_genome 75094 73631
TargetDB__(Targets) 140 138
NCBI_viral_sequences_(Viral) 14 14
Protozoadb_2010_08_(Protozoadb) 59 59
Protein_Data_Bank_(all_PDB_sequenc) 42 42
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 64 64
PDB_chains_(SCOP_1.75)_(PDB) 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.