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Domain combinations for Adhesin YadA, collagen-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Adhesin YadA, collagen-binding domain domain in that genome.

Complete genomes
Genome Number Proteins

Gorilla_gorilla_76_3.1 (Western gorilla) 1 1

Pongo_abelii_76_2 (Sumatran orangutan) 2 2

Rattus_norvegicus_76_5.0 (Norway rat) 1 1

Ovis_aries_76_3.1 (Sheep) 4 2

Dasypus_novemcinctus_76_2 (Nine-banded armadillo) 2 2

Macropus_eugenii_76_1.0 (Tammar wallaby) 1 1

Sarcophilus_harrisii_76_7.0 (Tasmanian devil) 1 1

Saccoglossus_kowalevskii_v3.0 137 108

Petromyzon_marinus_76_7.0 (Sea lamprey) 5 3

Gallus_gallus_76_4 (Chicken) 1 1

Taeniopygia_guttata_76_3.2.4 (Zebra finch) 2 2

Ficedula_albicollis_76_1.0 (Collared flycatcher) 3 2

Astyanax_mexicanus_76 (Mexican tetra) 2 2

Strongylocentrotus_purpuratus_v3.1 (Purple sea urchin) 1 1

Adineta_vaga 1 1

Octopus_bimaculoides_280 15 15

Lottia_gigantea_ (Owl limpet) 3 3

Helobdella_robusta_ 2 2

Capitella_sp._I_ 5 4

Danaus_plexippus_OGS1.0 (Monarch butterfly) 1 1

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 3 3

Lucilia_cuprina (Australian sheep blowfly) 3 3

Drosophila_mojavensis_1.3 1 1

Culex_pipiens_quinquefasciatus_ (Southern house mosquito) 4 4

Acyrthosiphon_pisum_ (Pea aphid) 1 1

Rhodnius_prolixus_22 4 4

Daphnia_pulex_ (Common water flea) 1 1

Strigamia_maritima_22 1 1

Meloidogyne_incognita_ (Southern root-knot nematode) 1 1

Brugia_malayi_WS250 (Agent of lymphatic filariasis) 1 1

Caenorhabditis_japonica_ 4 2

Caenorhabditis_remanei_ 4 2

Caenorhabditis_briggsae_2 7 7

Mnemiopsis_leidyi (Sea walnut) 3 3

Nematostella_vectensis_1.0 (Starlet sea anemone) 40 36

Hydra_vulgaris 2 2

Amphimedon_queenslandica 2 2

Monosiga_brevicollis_ 2 1

Sphaeroforma_arctica_JP610_ 10 10

Capsaspora_owczarzaki_ATCC_30864_ 1 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1

Amanita_muscaria_Koide_v1.0 (Fly agaric) 3 3

Schizophyllum_commune_ 1 1

Punctularia_strigosozonata_v1.0 2 2

Daldinia_eschscholzii_EC12_v1.0 1 1

Verticillium_dahliae_VdLs.17_ 1 1

Septoria_musiva_v1.0 1 1

Mycosphaerella_fijiensis_CIRAD86_ 2 2

Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1

Selaginella_moellendorffii_ 2 2

Picea_abies (Norway spruce) 1 1

Eucalyptus_grandis_v201 (Rose gum) 2 2

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1 1

Medicago_truncatula_ (Barrel medic) 1 1

Triticum_urartu_22 14 14

Triticum_aestivum_22 (Bread wheat) 26 26

Aegilops_tauschii_22 15 15

Brachypodium_distachyon_ (Stiff brome) 6 6

Oryza_barthii_22 (African wild rice) 1 1

Oryza_punctata_22 1 1

Oryza_brachyantha_22 (Malo sina) 2 2

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 1 1

Panicum_virgatum_v202 (Switchgrass) 5 5

Setaria_italica_v164 (Foxtail millet) 3 2

Sorghum_bicolor_ (Sorghum) 1 1

Physcomitrella_patens 1 1

Bathycoccus_prasinos_ 2 1

Micromonas_sp._RCC299_ 3 1

Micromonas_pusilla_CCMP1545_v3.0 4 1

Thecamonas_trahens_ATCC_50062_ 1 1

Phytophthora_sojae_1.1 1 1

Phytophthora_capsici_ 10 3

Hyaloperonospora_arabidopsidis_22 1 1

Fragilariopsis_cylindrus 5 4

Perkinsus_marinus_ATCC_50983_ 1 1

Cryptosporidium_muris 1 1

Plasmodium_falciparum_3D7_ 6 6

Plasmodium_vivax_SaI-1_7.0 1 1

Plasmodium_knowlesi_strain_H_ 1 1

Guillardia_theta_CCMP2712_v1.0_ 3 3

Emiliania_huxleyi_CCMP1516_ 8 7

Thermosynechococcus_sp._NK55 6 2

Thermosynechococcus_elongatus_BP-1 2 1

Rivularia_sp._PCC_7116 1 1

Nostoc_sp._PCC_7120 3 2

Nostoc_sp._PCC_7524 1 1

Slackia_heliotrinireducens_DSM_20476 2 1

Kineococcus_radiotolerans_SRS30216 2 1

Kitasatospora_setae_KM-6054 1 1

Pseudonocardia_dioxanivorans_CB1190 1 1

Kribbella_flavida_DSM_17836 1 1

Nocardioides_sp._JS614 1 1

Propionibacterium_propionicum_F0230a 1 1

Microlunatus_phosphovorus_NM-1 2 2

Actinoplanes_sp._SE50/110 1 1

Corynebacterium_ulcerans_0102 1 1

Corynebacterium_glutamicum_R 1 1

Sanguibacter_keddieii_DSM_10542 1 1

Microbacterium_testaceum_StLB037 1 1

Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 2 1

Jonesia_denitrificans_DSM_20603 1 1

Brachybacterium_faecium_DSM_4810 1 1

Xylanimonas_cellulosilytica_DSM_15894 1 1

[Cellvibrio]_gilvus_ATCC_13127 2 1

Arthrobacter_arilaitensis_Re117 1 1

Rothia_mucilaginosa_DY-18 1 1

Rothia_dentocariosa_ATCC_17931 2 1

Micrococcus_luteus_NCTC_2665 1 1

Arcanobacterium_haemolyticum_DSM_20595 1 1

Mobiluncus_curtisii_ATCC_43063 2 1

Roseiflexus_castenholzii_DSM_13941 1 1

Deinococcus_proteolyticus_MRP 2 1

Veillonella_parvula_DSM_2008 41 10

Megasphaera_elsdenii_DSM_20460 18 9

Acidaminococcus_intestini_RyC-MR95 16 7

Acidaminococcus_fermentans_DSM_20731 20 4

Selenomonas_ruminantium_subsp._lactilytica_TAM6421 2 1

Eubacterium_siraeum 2 2

Ruminococcus_bromii 1 1

Thermaerobacter_marianensis_DSM_12885 1 1

Acetobacterium_woodii_DSM_1030 1 1

Eubacterium_limosum_KIST612 1 1

Clostridium_lentocellum_DSM_5427 1 1

Eubacterium_rectale_M104/1 1 1

Coprococcus_sp._ART55/1 1 1

Roseburia_hominis_A2-183 1 1

Roseburia_intestinalis 2 1

Clostridium_acetobutylicum_ATCC_824 1 1

Thermoanaerobacter_italicus_Ab9 1 1

Leuconostoc_sp._C2 1 1

Leuconostoc_kimchii_IMSNU_11154 1 1

Leuconostoc_citreum_KM20 1 1

Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 1 1

Leuconostoc_gasicomitatum_LMG_18811 1 1

Lactobacillus_casei_ATCC_334 1 1

Lactobacillus_johnsonii_FI9785 1 1

Lactobacillus_ruminis_ATCC_27782 1 1

Lactobacillus_plantarum_JDM1 1 1

Lactobacillus_brevis_ATCC_367 2 2

Lactobacillus_acidophilus_30SC 1 1

Streptococcus_sp._I-G2 1 1

Streptococcus_gallolyticus_UCN34 1 1

Streptococcus_pseudopneumoniae_IS7493 1 1

Streptococcus_pasteurianus_ATCC_43144 2 1

Streptococcus_infantarius_subsp._infantarius_CJ18 1 1

Streptococcus_macedonicus_ACA-DC_198 1 1

Streptococcus_agalactiae_A909 1 1

Streptococcus_suis_P1/7 2 1

Exiguobacterium_sp._AT1b 2 1

Exiguobacterium_sibiricum_255-15 1 1

Paenibacillus_mucilaginosus_3016 3 1

Listeria_welshimeri_serovar_6b_str._SLCC5334 1 1

Listeria_innocua_Clip11262 1 1

Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2 1

Listeria_monocytogenes_serotype_4b_str._CLIP_80459 2 1

Listeria_ivanovii_subsp._ivanovii_PAM_55 1 1

Solibacillus_silvestris_StLB046 1 1

Geobacillus_thermoglucosidasius_C56-YS93 1 1

Anoxybacillus_flavithermus_WK1 1 1

Geobacillus_thermoleovorans_CCB_US3_UF5 1 1

Geobacillus_sp._GHH01 1 1

Geobacillus_sp._WCH70 1 1

Bacillus_halodurans_C-125 2 1

Bacillus_weihenstephanensis_KBAB4 1 1

Bacillus_thuringiensis_str._Al_Hakam 3 3

Bacillus_cereus_03BB102 3 3

Bacillus_anthracis_str._A0248 1 1

Bacillus_coagulans_2-6 2 2

Gemmatimonas_aurantiaca_T-27 1 1

Dyadobacter_fermentans_DSM_18053 5 5

Pedobacter_saltans_DSM_12145 1 1

Zunongwangia_profunda_SM-A87 5 3

Aequorivita_sublithincola_DSM_14238 3 2

Ornithobacterium_rhinotracheale_DSM_15997 2 1

Parachlamydia_acanthamoebae_UV-7 1 1

Candidatus_Koribacter_versatilis_Ellin345 2 2

Streptobacillus_moniliformis_DSM_12112 72 22

Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 4 3

Acidithiobacillus_ferrooxidans_ATCC_53993 2 1

Campylobacter_hominis_ATCC_BAA-381 11 3

Desulfobacca_acetoxidans_DSM_11109 1 1

Pelobacter_carbinolicus_DSM_2380 2 1

Stigmatella_aurantiaca_DW4/3-1 1 1

Neisseria_lactamica_020-06 10 5

Neisseria_gonorrhoeae_NCCP11945 3 2

beta_proteobacterium_CB 2 1

Thiomonas_arsenitoxydans 2 1

Burkholderia_rhizoxinica_HKI_454 2 2

Burkholderia_phytofirmans_PsJN 57 6

Burkholderia_phymatum_STM815 60 6

Burkholderia_xenovorans_LB400 49 4

Ralstonia_eutropha_JMP134 4 2

Burkholderia_sp._RPE64 3 2

Burkholderia_sp._CCGE1002 7 3

Burkholderia_thailandensis_E264 13 5

Burkholderia_pseudomallei_1106a 27 10

Burkholderia_mallei_SAVP1 13 6

Burkholderia_ambifaria_AMMD 35 6

Burkholderia_cenocepacia_HI2424 34 6

Burkholderia_multivorans_ATCC_17616 8 2

Burkholderia_vietnamiensis_G4 9 2

Burkholderia_gladioli_BSR3 34 7

Burkholderia_glumae_BGR1 24 5

Variovorax_paradoxus_S110 19 2

Collimonas_fungivorans_Ter331 39 10

Pusillimonas_sp._T7-7 5 1

Advenella_kashmirensis_WT001 3 2

Taylorella_asinigenitalis_MCE3 27 9

Taylorella_equigenitalis_MCE9 33 9

Achromobacter_xylosoxidans_A8 12 2

Methylovorus_glucosetrophus_SIP3-4 1 1

Erythrobacter_litoralis_HTCC2594 8 1

Hyphomonas_neptunium_ATCC_15444 3 1

Jannaschia_sp._CCS1 1 1

Micavibrio_aeruginosavorus_ARL-13 3 1

Ehrlichia_ruminantium_str._Gardel 1 1

Starkeya_novella_DSM_506 1 1

Methylobacterium_nodulans_ORS_2060 9 1

Methylobacterium_radiotolerans_JCM_2831 2 2

Brucella_microti_CCM_4915 6 2

Brucella_canis_ATCC_23365 3 1

Brucella_suis_ATCC_23445 4 1

Brucella_ovis_ATCC_25840 3 1

Brucella_abortus_S19 3 1

Sinorhizobium_medicae_WSM419 2 1

Sinorhizobium_meliloti_AK83 7 1

Agrobacterium_radiobacter_K84 36 2

Mesorhizobium_opportunistum_WSM2075 10 2

Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 9 1

Mesorhizobium_loti_MAFF303099 10 1

Nitrobacter_hamburgensis_X14 1 1

Bradyrhizobium_japonicum_USDA_110 9 4

Methylocystis_sp._SC2 2 2

Bartonella_tribocorum_CIP_105476 3 1

Bartonella_clarridgeiae_73 10 3

Bartonella_henselae_str._Houston-1 9 2

Bartonella_grahamii_as4aup 22 5

Bartonella_quintana_str._Toulouse 4 3

Bartonella_bacilliformis_KC583 9 3

Aggregatibacter_aphrophilus_NJ8700 12 3

Aggregatibacter_actinomycetemcomitans_D7S-1 3 1

Haemophilus_somnus_129PT 64 12

Gallibacterium_anatis_UMN179 16 6

Pasteurella_multocida_subsp._multocida_str._3480 14 4

Haemophilus_parainfluenzae_T3T1 16 4

Actinobacillus_succinogenes_130Z 26 2

Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 21 2

Halomonas_elongata_DSM_2581 3 1

Frateuria_aurantia_DSM_6220 2 1

Pseudoxanthomonas_suwonensis_11-1 2 1

Stenotrophomonas_maltophilia_K279a 30 4

Xylella_fastidiosa_M23 25 3

Xanthomonas_axonopodis_pv._citri_str._306 18 2

Xanthomonas_albilineans_GPE_PC73 23 3

Xanthomonas_oryzae_pv._oryzae_PXO99A 13 2

Xanthomonas_campestris_pv._campestris_str._B100 13 1

Photorhabdus_asymbiotica 1 1

Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1

Xenorhabdus_bovienii_SS-2004 1 1

Xenorhabdus_nematophila_ATCC_19061 1 1

Proteus_mirabilis_HI4320 2 2

Edwardsiella_tarda_EIB202 2 2

Yersinia_pseudotuberculosis_IP_31758 10 4

Yersinia_pestis_Pestoides_F 7 4

Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1

secondary_endosymbiont_of_Ctenarytaina_eucalypti 1 1

Shigella_sonnei_Ss046 10 1

Shigella_flexneri_5_str._8401 8 2

Shigella_dysenteriae_Sd197 12 3

Shigella_boydii_CDC_3083-94 7 2

Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 11 1

Enterobacter_aerogenes_KCTC_2190 1 1

Escherichia_fergusonii_ATCC_35469 14 1

Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 10 1

Psychrobacter_sp._G 9 3

Psychrobacter_cryohalolentis_K5 11 3

Moraxella_catarrhalis_RH4 6 3

Acinetobacter_baumannii_ATCC_17978 8 1

Acinetobacter_sp._ADP1 6 1

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Longest transcript per gene
Genome Number Proteins

Gorilla_gorilla_69_3.1 (Western gorilla) 1 1

Pongo_abelii_69_2 (Sumatran orangutan) 2 2

Macropus_eugenii_69_1.0 (Tammar wallaby) 1 1

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1 1

Petromyzon_marinus_69_7.0 (Sea lamprey) 5 3

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 2 2

Others
Genome Number Proteins

Homo_sapiens__(NCBI_version) (Human) 1 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1 1

Ricinus_communis__(Early_assembly) (Castor bean) 4 1

NCBI_plasmid_sequences_(Plasmids) 137 45

NCBI_viral_sequences_(Viral) 16 16

Protozoadb_2010_08_(Protozoadb) 19 19

TargetDB__(Targets) 62 22

STRING_v9.0.5_(STRING) 2353 628

Uniprot_2018_03_genome 36231 12144

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 69 55

NCBI_2017_08_genome 231903 48717

UniProt__viral_sequences_(Viral) 10 10

Protein_Data_Bank_(all_PDB_sequenc) 76 55

PDB_chains_(SCOP_1.75)_(PDB) 1 1

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Domain combinations for Adhesin YadA, collagen-binding domain superfamily in groups of genomes