SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Chlorophyll a-b binding protein superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Chlorophyll a-b binding protein domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 40 40
Pinus_taeda   (Loblolly pine)   25 25
Picea_abies   (Norway spruce)   28 28
Eucalyptus_grandis_v201   (Rose gum)   74 74
Theobroma_cacao_B97-61/B2_v1   (Cacao)   28 28
Gossypium_raimondii_v221 71 71
Citrus_clementina_v165 49 49
Citrus_sinensis_v154   (Sweet orange)   67 67
Thellungiella_halophila_v173 41 41
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   53 53
Capsella_rubella_v183 38 37
Arabidopsis_lyrata_   (Lyrate rockcress)   32 32
Arabidopsis_thaliana_10   (Thale cress)   45 45
Carica_papaya_   (Papaya)   28 28
Medicago_truncatula_   (Barrel medic)   51 51
Phaseolus_vulgaris_v186   (French bean)   42 42
Glycine_max_v109   (Soybean)   81 80
Cucumis_sativus_v122   (Cucumber)   27 27
Fragaria_vesca_   (Wild strawberry)   38 37
Malus_domestica_v196   (Apple)   89 89
Prunus_persica_v139   (Peach)   36 36
Linum_usitatissimum_v200   (Flax)   67 67
Manihot_esculenta_v147   (Cassava)   42 42
Populus_trichocarpa_v156   (Black cottonwood)   61 61
Vitis_vinifera_   (Wine grape)   31 31
Mimulus_guttatus_v140   (Spotted monkey flower)   53 53
Solanum_lycopersicum_v.2.3   (Tomato)   47 47
Solanum_tuberosum_   (Potato)   62 59
Actinidia_chinensis_Hongyang_ 25 25
Aquilegia_coerulea_v195 77 76
Triticum_urartu_22 51 49
Triticum_aestivum_22   (Bread wheat)   172 172
Aegilops_tauschii_22 40 37
Brachypodium_distachyon_   (Stiff brome)   40 40
Oryza_barthii_22   (African wild rice)   34 34
Oryza_meridionalis_22 35 32
Oryza_glumaepatula_22 38 37
Oryza_glaberrima   (African rice)   28 28
Oryza_punctata_22 33 33
Oryza_nivara_22 35 35
Oryza_brachyantha_22   (Malo sina)   26 26
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   49 49
Oryza_sativa_v193   (Rice)   49 49
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   46 46
Panicum_virgatum_v202   (Switchgrass)   65 65
Setaria_italica_v164   (Foxtail millet)   34 34
Zea_mays_subsp._mays_   (Maize)   75 75
Zea_mays_v181   (Maize)   78 78
Sorghum_bicolor_   (Sorghum)   31 30
Musa_balbisiana   (Balbis banana)   44 42
Musa_acuminata_22   (Wild Malaysian banana)   45 45
Amborella_trichopoda_22 30 30
Physcomitrella_patens 81 81
Coccomyxa_subellipsoidea_sp._C-169_v2 46 42
Asterochloris_sp._Cgr/DA1pho_v1.0 32 29
Chlorella_variabilis_sp._NC64A_ 31 31
Chlorella_vulgaris_ 44 40
Volvox_carteri_f._nagariensis_ 49 48
Volvox_carteri_v199 66 65
Chlamydomonas_reinhardtii_4.0 47 44
Ostreococcus_sp._RCC809_ 29 29
Ostreococcus_lucimarinus_CCE9901_ 29 28
Ostreococcus_tauri_ 25 24
Bathycoccus_prasinos_ 33 32
Micromonas_sp._RCC299_ 35 33
Micromonas_pusilla_CCMP1545_v3.0 38 35
Cyanidioschyzon_merolae_strain_10D_22 4 4
Cyanidioschyzon_merolae 5 5
Porphyridium_purpureum_02_2012 15 15
Bigelowiella_natans_CCMP2755_22 24 24
Cyanophora_paradoxa_ 6 6
Ectocarpus_siliculosus 53 52
Aureococcus_anophagefferens_ 65 64
Phaeodactylum_tricornutumCCAP_1055/1 46 45
Fragilariopsis_cylindrus 109 105
Thalassiosira_pseudonana_CCMP1335 46 46
Symbiodinium_minutum_clade_B1_v1.2 243 114
Guillardia_theta_CCMP2712_v1.0_ 24 24
Emiliania_huxleyi_CCMP1516_ 124 123
Leptolyngbya_sp._PCC_7376 7 7
Pseudanabaena_sp._PCC_7367 6 6
Acaryochloris_marina_MBIC11017 21 21
Synechocystis_sp._PCC_6803 5 5
Thermosynechococcus_sp._NK55 5 5
Thermosynechococcus_elongatus_BP-1 5 5
Synechococcus_sp._PCC_7502 5 5
Synechococcus_sp._PCC_6312 5 5
Synechococcus_sp._CC9311 17 17
Synechococcus_elongatus_PCC_7942 7 7
Prochlorococcus_marinus_str._MIT_9515 21 21
Microcoleus_sp._PCC_7113 8 8
Trichodesmium_erythraeum_IMS101 3 3
Geitlerinema_sp._PCC_7407 4 4
Cyanothece_sp._PCC_8802 3 3
Gloeocapsa_sp._PCC_7428 8 8
cyanobacterium_UCYN-A 2 2
Halothece_sp._PCC_7418 5 5
Microcystis_aeruginosa_NIES-843 4 4
Gloeobacter_violaceus_PCC_7421 6 6
Rivularia_sp._PCC_7116 4 4
Calothrix_sp._PCC_7507 7 7
Anabaena_variabilis_ATCC_29413 8 8
'Nostoc_azollae'_0708 5 5
Nostoc_sp._PCC_7107 5 5
Nostoc_punctiforme_PCC_73102 10 10
Nostoc_sp._PCC_7120 9 9
Nostoc_sp._PCC_7524 7 7
Anabaena_sp._90 3 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   26 26
Hordeum_vulgare_22   (Domesticated barley)   70 70
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   31 31
Chroococcidiopsis_thermalis_PCC_7203 7 7
Chamaesiphon_minutus_PCC_6605 7 7
Synechocystis_sp._PCC_6803_substr._PCC-P 5 5
Synechocystis_sp._PCC_6803_substr._PCC-N 5 5
Synechocystis_sp._PCC_6803_substr._GT-I 5 5
Synechocystis_sp._PCC_6803 5 5
Cyanobium_gracile_PCC_6307 11 11
Dactylococcopsis_salina_PCC_8305 5 5
Synechococcus_sp._JA-2-3B'a(2-13) 5 5
Synechococcus_sp._JA-3-3Ab 5 5
Synechococcus_sp._CC9902 9 9
Synechococcus_sp._RCC307 10 10
Synechococcus_sp._CC9605 10 10
Synechococcus_sp._WH_8102 9 9
Synechococcus_sp._WH_7803 10 10
Synechococcus_sp._PCC_7002 5 5
Synechococcus_elongatus_PCC_6301 6 6
Prochlorococcus_marinus_str._NATL1A 20 20
Prochlorococcus_marinus_str._MIT_9301 16 16
Prochlorococcus_marinus_str._AS9601 19 19
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 10 10
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 21 21
Prochlorococcus_marinus_str._MIT_9215 16 16
Prochlorococcus_marinus_str._MIT_9211 11 11
Prochlorococcus_marinus_str._MIT_9313 10 10
Prochlorococcus_marinus_str._MIT_9312 25 25
Prochlorococcus_marinus_str._MIT_9303 10 10
Prochlorococcus_marinus_str._NATL2A 19 19
Crinalium_epipsammum_PCC_9333 6 6
Oscillatoria_nigro-viridis_PCC_7112 7 7
Oscillatoria_acuminata_PCC_6304 7 7
Arthrospira_platensis_NIES-39 4 4
Cyanothece_sp._PCC_7822 4 4
Cyanothece_sp._PCC_7425 6 6
Cyanothece_sp._PCC_7424 6 6
Cyanothece_sp._ATCC_51142 7 7
Cyanothece_sp._PCC_8801 3 3
Cyanobacterium_aponinum_PCC_10605 3 3
Cyanobacterium_stanieri_PCC_7202 4 4
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 6 6
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 6 6
Stanieria_cyanosphaera_PCC_7437 5 5
Calothrix_parietina_Calothrix_sp._PCC_6303 5 5
Cylindrospermum_stagnale_PCC_7417 6 6
Anabaena_cylindrica_PCC_7122 5 5

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   34 34

Others
Genome     Number   Proteins
Pinus_sylvestris__(Incomplete)   (Scots pine)   3 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   31 31
Lotus_japonicus__(Early_assembly) 30 30
Malus_x_domestica_(Duplicate)   (Apple)   89 89
Ricinus_communis__(Early_assembly)   (Castor bean)   28 28
Nicotiana_benthamiana_0.4.4_(Early_draft) 114 104
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   47 47
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   47 47
Phoenix_dactylifera__(Early_draft)   (Date palm)   15 15
Guillardia_theta_(nucleomorph) 2 2
NCBI_plasmid_sequences_(Plasmids) 6 6
UniProt__viral_sequences_(Viral) 19 19
STRING_v9.0.5_(STRING) 917 911
NCBI_2017_08_genome 7095 7063
Uniprot_2018_03_genome 10834 10565
NCBI_viral_sequences_(Viral) 84 84
TargetDB__(Targets) 13 13
PDB_chains_(SCOP_1.75)_(PDB) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 136 136
Protein_Data_Bank_(all_PDB_sequenc) 153 153

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]