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Domain combinations for ApaG-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a ApaG-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   8 8
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   2 2
Pongo_abelii_76_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2 2
Papio_anubis_76   (Olive baboon)   3 3
Macaca_mulatta_76_1   (Rhesus monkey)   2 2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6 6
Otolemur_garnettii_76_3   (Small-eared galago)   2 2
Microcebus_murinus_76_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   1 1
Mus_musculus_76_38   (House mouse)   6 6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4 4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2 2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3 3
Cavia_porcellus_76_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_76_2   (Rabbit)   3 3
Ochotona_princeps_76   (American pika)   3 3
Tupaia_belangeri_76   (Northern tree shrew)   1 1
Sus_scrofa_76_10.2   (Pig)   3 3
Bos_taurus_76_3.1   (Cattle)   2 2
Ovis_aries_76_3.1   (Sheep)   2 2
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_76_1   (Giant panda)   2 2
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   2 2
Equus_caballus_76_2   (Horse)   2 2
Myotis_lucifugus_76_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_76_1   (Large flying fox)   2 2
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   2 2
Procavia_capensis_76_1   (Cape rock hyrax)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   3 3
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2 2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 2 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   2 2
Gallus_gallus_76_4   (Chicken)   2 2
Anas_platyrhynchos_76_1.0   (Mallard)   2 2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   1 1
Xenopus_laevis_   (African clawed frog)   9 9
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_76_1   (Coelacanth)   6 6
Lepisosteus_oculatus_76   (Spotted gar)   2 2
Gadus_morhua_76_1   (Atlantic cod)   2 2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_76_4   (Torafugu)   3 3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3 3
Oryzias_latipes_76_1   (Japanese medaka)   3 3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 2
Poecilia_formosa_76   (Amazon molly)   2 2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   3 3
Danio_rerio_76_9   (Zebrafish)   4 4
Oikopleura_dioica 3 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 4 4
Octopus_bimaculoides_280 2 2
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 2 2
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 1 1
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 1 1
Drosophila_yakuba_1.3 1 1
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   2 2
Drosophila_erecta_1.3 1 1
Drosophila_ananassae_1.3 1 1
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 2 2
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 3 3
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 1 1
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Selaginella_moellendorffii_ 2 2
Pinus_taeda   (Loblolly pine)   6 6
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   4 4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 5 5
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   6 6
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1
Carica_papaya_   (Papaya)   2 2
Medicago_truncatula_   (Barrel medic)   2 2
Phaseolus_vulgaris_v186   (French bean)   4 4
Glycine_max_v109   (Soybean)   6 6
Cucumis_sativus_v122   (Cucumber)   2 2
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   4 4
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   3 3
Manihot_esculenta_v147   (Cassava)   4 4
Populus_trichocarpa_v156   (Black cottonwood)   4 4
Vitis_vinifera_   (Wine grape)   3 3
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   2 2
Solanum_tuberosum_   (Potato)   3 3
Actinidia_chinensis_Hongyang_ 3 3
Aquilegia_coerulea_v195 10 10
Triticum_urartu_22 2 2
Triticum_aestivum_22   (Bread wheat)   6 6
Aegilops_tauschii_22 2 2
Brachypodium_distachyon_   (Stiff brome)   3 3
Oryza_barthii_22   (African wild rice)   4 4
Oryza_meridionalis_22 5 5
Oryza_glumaepatula_22 3 3
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 3 3
Oryza_nivara_22 4 4
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6 6
Oryza_sativa_v193   (Rice)   6 6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3 3
Panicum_virgatum_v202   (Switchgrass)   6 6
Setaria_italica_v164   (Foxtail millet)   3 3
Zea_mays_subsp._mays_   (Maize)   3 3
Zea_mays_v181   (Maize)   4 4
Sorghum_bicolor_   (Sorghum)   2 2
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 1 1
Physcomitrella_patens 2 2
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 3 3
Chlorella_variabilis_sp._NC64A_ 3 3
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 3 3
Volvox_carteri_v199 3 3
Chlamydomonas_reinhardtii_4.0 3 3
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 3 3
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Porphyridium_purpureum_02_2012 2 2
Thecamonas_trahens_ATCC_50062_ 2 2
Bigelowiella_natans_CCMP2755_22 1 1
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 2 2
Aureococcus_anophagefferens_ 3 3
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 3 2
Perkinsus_marinus_ATCC_50983_ 1 1
Tetrahymena_thermophila_SB210_1_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 5 3
Naegleria_gruberi_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 4 4
Emiliania_huxleyi_CCMP1516_ 7 5
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 1 1
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 1 1
Gemmatimonas_aurantiaca_T-27 1 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Salinibacter_ruber_M8 1 1
Rhodothermus_marinus_DSM_4252 1 1
Flexibacter_litoralis_DSM_6794 1 1
Belliella_baltica_DSM_15883 1 1
Cyclobacterium_marinum_DSM_745 1 1
Marivirga_tractuosa_DSM_4126 1 1
Fibrella_aestuarina 1 1
Leadbetterella_byssophila_DSM_17132 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 1 1
Pedobacter_saltans_DSM_12145 1 1
Solitalea_canadensis_DSM_3403 1 1
Pedobacter_heparinus_DSM_2366 1 1
Sphingobacterium_sp._21 1 1
Fluviicola_taffensis_DSM_16823 1 1
Zunongwangia_profunda_SM-A87 1 1
Krokinobacter_sp._4H-3-7-5 1 1
Gramella_forsetii_KT0803 1 1
Lacinutrix_sp._5H-3-7-4 1 1
Maribacter_sp._HTCC2170 1 1
Robiginitalea_biformata_HTCC2501 1 1
Croceibacter_atlanticus_HTCC2559 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Zobellia_galactanivorans 1 1
Muricauda_ruestringensis_DSM_13258 1 1
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 1 1
Flavobacteriaceae_bacterium_3519-10 1 1
Polaribacter_sp._MED152 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 1 1
Methylacidiphilum_infernorum_V4 1 1
Opitutus_terrae_PB90-1 1 1
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Turneriella_parva_DSM_21527 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Acidithiobacillus_ferrivorans_SS3 1 1
Acidithiobacillus_caldus_SM-1 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Dechloromonas_aromatica_RCB 1 1
Thauera_sp._MZ1T 1 1
Azoarcus_sp._KH32C 1 1
Azoarcus_sp._BH72 1 1
Aromatoleum_aromaticum_EbN1 1 1
Dechlorosoma_suillum_PS 1 1
Pseudogulbenkiania_sp._NH8B 1 1
Chromobacterium_violaceum_ATCC_12472 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
beta_proteobacterium_CB 1 1
Methylibium_petroleiphilum_PM1 1 1
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 1 1
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 1 1
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 1 1
Ralstonia_pickettii_12D 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 1 1
Burkholderia_sp._RPE64 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_mallei_SAVP1 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 1 1
Burkholderia_glumae_BGR1 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Alicycliphilus_denitrificans_K601 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Polaromonas_sp._JS666 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Rhodoferax_ferrireducens_T118 1 1
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Comamonas_testosteroni_CNB-2 1 1
Herminiimonas_arsenicoxydans 1 1
Collimonas_fungivorans_Ter331 1 1
Janthinobacterium_sp._Marseille 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Pusillimonas_sp._T7-7 1 1
Advenella_kashmirensis_WT001 1 1
Bordetella_petrii_DSM_12804 1 1
Bordetella_avium_197N 1 1
Bordetella_pertussis_Tohama_I 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans_A8 1 1
Achromobacter_xylosoxidans 1 1
Thiobacillus_denitrificans_ATCC_25259 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosomonas_sp._Is79A3 1 1
Nitrosomonas_eutropha_C91 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Sideroxydans_lithotrophicus_ES-1 1 1
Gallionella_capsiferriformans_ES-2 1 1
Methylotenera_versatilis_301 1 1
Methylotenera_mobilis_JLW8 1 1
Methylovorus_sp._MP688 1 1
Methylovorus_glucosetrophus_SIP3-4 1 1
Methylobacillus_flagellatus_KT 1 1
Magnetococcus_marinus_MC-1 1 1
Parvularcula_bermudensis_HTCC2503 1 1
Asticcacaulis_excentricus_CB_48 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 1 1
Caulobacter_crescentus_NA1000 1 1
Caulobacter_segnis_ATCC_21756 1 1
Erythrobacter_litoralis_HTCC2594 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_sp._PP1Y 1 1
Novosphingobium_aromaticivorans_DSM_12444 1 1
Sphingobium_sp._SYK-6 1 1
Sphingobium_japonicum_UT26S 1 1
Sphingobium_chlorophenolicum_L-1 1 1
Sphingomonas_sp._MM-1 1 1
Sphingomonas_wittichii_RW1 1 1
Maricaulis_maris_MCS10 1 1
Hirschia_baltica_ATCC_49814 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Pseudovibrio_sp._FO-BEG1 1 1
Rhodospirillum_photometricum_DSM_122 1 1
Tistrella_mobilis_KA081020-065 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Rhodospirillum_centenum_SW 1 1
Rhodospirillum_rubrum_F11 1 1
Azospirillum_lipoferum_4B 1 1
Azospirillum_sp._B510 1 1
Azospirillum_brasilense_Sp245 1 1
Gluconacetobacter_xylinus_NBRC_3288 1 1
Granulibacter_bethesdensis_CGDNIH1 1 1
Acidiphilium_multivorum_AIU301 1 1
Acidiphilium_cryptum_JF-5 1 1
Gluconobacter_oxydans_621H 1 1
Acetobacter_pasteurianus_IFO_3283-01 1 1
Polymorphum_gilvum_SL003B-26A1 1 1
alpha_proteobacterium_HIMB59 1 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 1 1
Wolbachia_sp._wRi 1 1
Ehrlichia_chaffeensis_str._Arkansas 1 1
Ehrlichia_canis_str._Jake 1 1
Ehrlichia_ruminantium_str._Gardel 1 1
Anaplasma_phagocytophilum_HZ 1 1
Anaplasma_marginale_str._Florida 1 1
Anaplasma_centrale_str._Israel 1 1
Orientia_tsutsugamushi_str._Boryong 1 1
Starkeya_novella_DSM_506 1 1
Xanthobacter_autotrophicus_Py2 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Ochrobactrum_anthropi_ATCC_49188 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Sinorhizobium_fredii_NGR234 1 1
Sinorhizobium_medicae_WSM419 1 1
Sinorhizobium_meliloti_AK83 1 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1
Rhizobium_etli_CIAT_652 1 1
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Agrobacterium_tumefaciens_str._C58 1 1
Agrobacterium_radiobacter_K84 1 1
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 1 1
Mesorhizobium_sp._BNC1 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 1 1
Methylocella_silvestris_BL2 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1
Hyphomicrobium_sp._MC1 1 1
Hyphomicrobium_denitrificans_ATCC_51888 1 1
Oligotropha_carboxidovorans_OM4 1 1
Rhodopseudomonas_palustris_BisA53 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_japonicum_USDA_110 1 1
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 1 1
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 1 1
Cellvibrio_japonicus_Ueda107 1 1
Oceanimonas_sp._GK1 1 1
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 1 1
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 1 1
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_sp._MR-4 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Shewanella_putrefaciens_CN-32 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Glaciecola_nitratireducens_FR1064 1 1
Alteromonas_sp._SN2 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 1 1
Alcanivorax_borkumensis_SK2 1 1
Marinomonas_posidonica_IVIA-Po-181 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 1 1
Chromohalobacter_salexigens_DSM_3043 1 1
Halomonas_elongata_DSM_2581 1 1
Methylomicrobium_alcaliphilum 1 1
Methylomonas_methanica_MC09 1 1
Methylococcus_capsulatus_str._Bath 1 1
Rhodanobacter_denitrificans 1 1
Frateuria_aurantia_DSM_6220 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_albilineans_GPE_PC73 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Halothiobacillus_neapolitanus_c2 1 1
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Thioalkalivibrio_sp._K90mix 1 1
Allochromatium_vinosum_DSM_180 1 1
Thiocystis_violascens_DSM_198 1 1
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
gamma_proteobacterium_HdN1 1 1
Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 1 1
Candidatus_Vesicomyosocius_okutanii_HA 1 1
Photorhabdus_asymbiotica 1 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_bovienii_SS-2004 1 1
Xenorhabdus_nematophila_ATCC_19061 1 1
Providencia_stuartii_MRSN_2154 1 1
Proteus_mirabilis_HI4320 1 1
Edwardsiella_ictaluri_93-146 1 1
Edwardsiella_tarda_EIB202 1 1
Rahnella_sp._Y9602 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_pestis_Pestoides_F 1 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Serratia_sp._AS12 1 1
Serratia_symbiotica_str._'Cinara_cedri' 1 1
Serratia_sp._ATCC_39006 1 1
Serratia_plymuthica_AS9 1 1
Serratia_proteamaculans_568 1 1
Dickeya_dadantii_Ech703 1 1
Dickeya_zeae_Ech1591 1 1
Pectobacterium_wasabiae_WPP163 1 1
Pectobacterium_sp._SCC3193 1 1
Pectobacterium_atrosepticum_SCRI1043 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Sodalis_glossinidius_str._'morsitans' 1 1
Pantoea_sp._At-9b 1 1
Pantoea_vagans_C9-1 1 1
Pantoea_ananatis_LMG_20103 1 1
Erwinia_tasmaniensis_Et1/99 1 1
Erwinia_sp._Ejp617 1 1
Erwinia_billingiae_Eb661 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Erwinia_amylovora_ATCC_49946 1 1
Escherichia_blattae_DSM_4481 1 1
Cronobacter_turicensis_z3032 1 1
Cronobacter_sakazakii_ES15 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 1 1
Shigella_dysenteriae_Sd197 1 1
Shigella_boydii_CDC_3083-94 1 1
Salmonella_bongori_NCTC_12419 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Klebsiella_oxytoca_E718 1 1
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Enterobacter_sp._R4-368 1 1
Enterobacter_sp._638 1 1
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Citrobacter_rodentium_ICC168 1 1
Citrobacter_koseri_ATCC_BAA-895 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 1 1
Methylophaga_sp._JAM1 1 1
Cycloclasticus_sp._P1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7 7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   2 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3 3
Trypanosoma_brucei_Lister_427_v4.1 1 1
Deinococcus_peraridilitoris_DSM_19664 1 1
Salinibacter_ruber_DSM_13855 1 1
Rhodothermus_marinus_SG0.5JP17-172 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Emticicia_oligotrophica_DSM_17448 1 1
Nonlabens_dokdonensis_DSW-6 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Sorangium_cellulosum_So0157-2 1 1
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Burkholderia_phenoliruptrix_BR3459a 1 1
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1 1
Burkholderia_sp._YI23 1 1
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 1 1
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_mallei_NCTC_10229 1 1
Burkholderia_mallei_NCTC_10247 1 1
Burkholderia_mallei_ATCC_23344 1 1
Burkholderia_lata 1 1
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 1 1
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Bordetella_pertussis_CS 1 1
Bordetella_parapertussis_18323 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Nitrosomonas_sp._AL212 1 1
Sulfuricella_denitrificans_skB26 1 1
Caulobacter_crescentus_CB15 1 1
Candidatus_Endolissoclinum_faulkneri_L2 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Rhodospirillum_rubrum_ATCC_11170 1 1
Gluconobacter_oxydans_H24 1 1
Acetobacter_pasteurianus_386B 1 1
Acetobacter_pasteurianus_IFO_3283-12 1 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1 1
Acetobacter_pasteurianus_IFO_3283-32 1 1
Acetobacter_pasteurianus_IFO_3283-26 1 1
Acetobacter_pasteurianus_IFO_3283-22 1 1
Acetobacter_pasteurianus_IFO_3283-07 1 1
Acetobacter_pasteurianus_IFO_3283-03 1 1
Wolbachia_endosymbiont_of_Drosophila_melanogaster 1 1
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 1 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1 1
Ehrlichia_muris_AS145 1 1
Ehrlichia_ruminantium_str._Welgevonden 1 1
Ehrlichia_ruminantium_str._Welgevonden 1 1
Anaplasma_phagocytophilum_str._Dog2 1 1
Anaplasma_phagocytophilum_str._HZ2 1 1
Anaplasma_phagocytophilum_str._JM 1 1
Anaplasma_marginale_str._Gypsy_Plains 1 1
Anaplasma_marginale_str._St._Maries 1 1
Orientia_tsutsugamushi_str._Ikeda 1 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Brucella_ceti_TE10759-12 2 2
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_2011 1 1
Sinorhizobium_meliloti_GR4 1 1
Sinorhizobium_meliloti_Rm41 1 1
Sinorhizobium_meliloti_SM11 1 1
Sinorhizobium_meliloti_BL225C 1 1
Sinorhizobium_meliloti_1021 1 1
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_tropici_CIAT_899 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Mesorhizobium_australicum_WSM2073 1 1
Hyphomicrobium_nitrativorans_NL23 1 1
Hyphomicrobium_denitrificans_1NES1 1 1
Oligotropha_carboxidovorans_OM5 1 1
Oligotropha_carboxidovorans_OM5 1 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB5 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Bradyrhizobium_sp._S23321 1 1
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 1 1
Glaciecola_psychrophila_170 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_str._'English_Channel_615' 1 1
Alteromonas_macleodii_AltDE1 1 1
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alteromonas_macleodii_ATCC_27126 1 1
Alcanivorax_dieselolei_B5 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_M12 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Thioflavicoccus_mobilis_8321 1 1
Proteus_mirabilis_BB2000 1 1
Morganella_morganii_subsp._morganii_KT 1 1
Edwardsiella_tarda_C07-087 1 1
Edwardsiella_tarda_FL6-60 1 1
Rahnella_aquatilis_HX2 1 1
Yersinia_pseudotuberculosis_PB1/+ 1 1
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Serratia_sp._AS13 1 1
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_marcescens_FGI94 1 1
Serratia_marcescens_WW4 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Dickeya_dadantii_Ech586 1 1
Dickeya_dadantii_3937 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Pantoea_ananatis_LMG_5342 1 1
Pantoea_ananatis_PA13 1 1
Pantoea_ananatis_AJ13355 1 1
Erwinia_pyrifoliae_DSM_12163 1 1
Erwinia_amylovora_CFBP1430 1 1
Cronobacter_sakazakii_CMCC_45402 1 1
Cronobacter_sakazakii_SP291 1 1
Cronobacter_sakazakii_ATCC_BAA-894 1 1
Raoultella_ornithinolytica_B6 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_dysenteriae_1617 1 1
Shigella_boydii_Sb227 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_JJ1886 1 1
Escherichia_coli_LY180 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_NA114 1 1
Escherichia_coli_P12b 1 1
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_042 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_UMNK88 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_ED1a 1 1
Escherichia_coli_IAI39 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_55989 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_CFT073 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Escherichia_coli_str._K-12_substr._MDS42 1 1
Escherichia_coli_BW2952 1 1
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1
Escherichia_coli_B_str._REL606 1 1
Enterobacter_cloacae_SCF1 1 1
Enterobacter_cloacae_EcWSU1 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Methylophaga_sp._JAM7 1 1
Cycloclasticus_zancles_7-ME 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   1 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2 2
Macaca_mulatta_69_1   (Rhesus monkey)   2 2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2 2
Otolemur_garnettii_69_3   (Small-eared galago)   2 2
Microcebus_murinus_69_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_69_3.4   (Norway rat)   2 2
Mus_musculus_69_38   (House mouse)   2 2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4 4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2 2
Cavia_porcellus_69_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_69_2   (Rabbit)   2 2
Ochotona_princeps_69   (American pika)   3 3
Tupaia_belangeri_69   (Northern tree shrew)   1 1
Sus_scrofa_69_10.2   (Pig)   2 2
Bos_taurus_69_3.1   (Cattle)   2 2
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_69_1   (Giant panda)   2 2
Canis_familiaris_69_3.1   (Dog)   2 2
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   2 2
Myotis_lucifugus_69_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_69_1   (Large flying fox)   2 2
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   2 2
Procavia_capensis_69_1   (Cape rock hyrax)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   2 2
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2 2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_69_5   (Platypus)   2 2
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   2 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   2 2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_69_4   (Torafugu)   2 2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2 2
Oryzias_latipes_69_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   3 3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   8 8
Homo_sapiens__(NCBI_version)   (Human)   3 3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2 2
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   4 4
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2 2
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
Protozoadb_2010_08_(Protozoadb) 7 7
Uniprot_2018_03_genome 8287 8279
NCBI_2017_08_genome 38198 38193
PDB_chains_(SCOP_1.75)_(PDB) 3 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 29 29
TargetDB__(Targets) 32 32
Protein_Data_Bank_(all_PDB_sequenc) 10 10
STRING_v9.0.5_(STRING) 475 474

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.