Domain combinations for DNA-binding protein LAG-1 (CSL) superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a DNA-binding protein LAG-1 (CSL) domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	15	15
Pan_troglodytes_76_2.1.4	(Chimpanzee)	2	2
Gorilla_gorilla_76_3.1	(Western gorilla)	3	3
Pongo_abelii_76_2	(Sumatran orangutan)	3	3
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	2	2
Papio_anubis_76	(Olive baboon)	2	2
Macaca_mulatta_76_1	(Rhesus monkey)	6	6
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	6	6
Otolemur_garnettii_76_3	(Small-eared galago)	2	2
Microcebus_murinus_76_1	(Gray mouse lemur)	2	2
Rattus_norvegicus_76_5.0	(Norway rat)	3	3
Mus_musculus_76_38	(House mouse)	4	4
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	2	2
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	2	2
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	3	3
Cavia_porcellus_76_3	(Domestic guinea pig)	2	2
Oryctolagus_cuniculus_76_2	(Rabbit)	2	2
Ochotona_princeps_76	(American pika)	2	2
Tupaia_belangeri_76	(Northern tree shrew)	2	2
Sus_scrofa_76_10.2	(Pig)	1	1
Bos_taurus_76_3.1	(Cattle)	2	2
Ovis_aries_76_3.1	(Sheep)	2	2
Vicugna_pacos_76_1	(Alpaca)	2	2
Tursiops_truncatus_76_1	(Bottlenose dolphin)	2	2
Mustela_putorius_furo_76_1.0	(Domestic ferret)	2	2
Ailuropoda_melanoleuca_76_1	(Giant panda)	2	2
Canis_familiaris_76_3.1	(Dog)	2	2
Felis_catus_76_6.2	(Domestic cat)	2	2
Equus_caballus_76_2	(Horse)	2	2
Myotis_lucifugus_76_2.0	(Little brown bat)	2	2
Pteropus_vampyrus_76_1	(Large flying fox)	2	2
Sorex_araneus_76_1	(European shrew)	1	1
Erinaceus_europaeus_76	(Western European hedgehog)	2	2
Procavia_capensis_76_1	(Cape rock hyrax)	2	2
Loxodonta_africana_76_3	(African savanna elephant)	3	3
Echinops_telfairi_76	(Small Madagascar hedgehog)	1	1
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	3	3
Choloepus_hoffmanni_76_1	(Hoffmann's two-fingered sloth)	2	2
Macropus_eugenii_76_1.0	(Tammar wallaby)	2	2
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	2	2
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	2	2
Ornithorhynchus_anatinus_76_5	(Platypus)	2	2
Saccoglossus_kowalevskii_v3.0		4	4
Meleagris_gallopavo_76_2	(Turkey)	2	2
Gallus_gallus_76_4	(Chicken)	2	2
Anas_platyrhynchos_76_1.0	(Mallard)	2	2
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	2	2
Ficedula_albicollis_76_1.0	(Collared flycatcher)	2	2
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	3	3
Anolis_carolinensis_76_2.0	(Green anole)	2	2
Xenopus_laevis_	(African clawed frog)	5	5
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	1	1
Latimeria_chalumnae_76_1	(Coelacanth)	3	3
Lepisosteus_oculatus_76	(Spotted gar)	3	3
Gadus_morhua_76_1	(Atlantic cod)	1	1
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	2	2
Takifugu_rubripes_76_4	(Torafugu)	2	2
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	1	1
Oryzias_latipes_76_1	(Japanese medaka)	3	3
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	3	3
Poecilia_formosa_76	(Amazon molly)	3	3
Oreochromis_niloticus_76_1.0	(Nile tilapia)	5	5
Astyanax_mexicanus_76	(Mexican tetra)	4	4
Danio_rerio_76_9	(Zebrafish)	4	4
Oikopleura_dioica		2	2
Ciona_savignyi_76_2.0	(Pacific transparent sea squirt)	7	6
Ciona_intestinalis_76	(Vase tunicate)	2	2
Strongylocentrotus_purpuratus_v3.1	(Purple sea urchin)	2	1
Adineta_vaga		5	5
Octopus_bimaculoides_280		7	7
Crassostrea_gigas_22	(Pacific oyster)	1	1
Lottia_gigantea_	(Owl limpet)	1	1
Helobdella_robusta_		2	2
Capitella_sp._I_		1	1
Danaus_plexippus_OGS1.0	(Monarch butterfly)	1	1
Heliconius_melpomene_	(Postman butterfly)	1	1
Bombyx_mori_	(Domestic silkworm)	1	1
Nasonia_vitripennis_	(Jewel wasp)	2	2
Apis_mellifera_38.2d_(Not_maintained)	(Honey bee)	2	2
Harpegnathos_saltator_v3.3	(Jerdon's jumping ant)	1	1
Linepithema_humile_v1.1	(Argentine ant)	1	1
Pogonomyrmex_barbatus_v1.2	(Red harvester ant)	1	1
Solenopsis_invicta_v.2.2.3	(Red fire ant)	1	1
Acromyrmex_echinatior_v3.8	(Panamanian leafcutter ant)	1	1
Atta_cephalotes_v1.1		1	1
Camponotus_floridanus_v3.3	(Florida carpenter ant)	1	1
Lucilia_cuprina	(Australian sheep blowfly)	1	1
Drosophila_grimshawi_1.3		1	1
Drosophila_willistoni_1.3		1	1
Drosophila_pseudoobscura_2.13		2	2
Drosophila_persimilis_1.3		1	1
Drosophila_suzukii		1	1
Drosophila_yakuba_1.3		1	1
Drosophila_simulans_1.3		1	1
Drosophila_sechellia_1.3		1	1
Drosophila_melanogaster_76_5	(Fruit fly)	1	1
Drosophila_erecta_1.3		1	1
Drosophila_ananassae_1.3		1	1
Drosophila_virilis_1.2		1	1
Drosophila_mojavensis_1.3		1	1
Megaselia_scalaris_22		1	1
Aedes_aegypti_55_(Not_maintained)	(Yellow fever mosquito)	1	1
Culex_pipiens_quinquefasciatus_	(Southern house mosquito)	1	1
Anopheles_darlingi_22	(American malaria mosquito)	1	1
Anopheles_gambiae_49_3j	(African malaria mosquito)	1	1
Tribolium_castaneum_3.0	(Red flour beetle)	1	1
Pediculus_humanus_corporis__(Early_assembly)	(Human body louse)	1	1
Acyrthosiphon_pisum_	(Pea aphid)	2	2
Rhodnius_prolixus_22		1	1
Daphnia_pulex_	(Common water flea)	1	1
Strigamia_maritima_22		1	1
Sarcoptes_scabiei		1	1
Tetranychus_urticae_	(Two-spotted spider mite)	4	4
Ixodes_scapularis__(Preliminary)	(Black-legged tick)	1	1
Pristionchus_pacificus_		2	2
Meloidogyne_incognita_	(Southern root-knot nematode)	2	2
Meloidogyne_hapla_		2	2
Onchocerca_volvulus_22		1	1
Brugia_malayi_WS250	(Agent of lymphatic filariasis)	3	3
Caenorhabditis_japonica_		1	1
Caenorhabditis_brenneri_		7	7
Caenorhabditis_remanei_		2	2
Caenorhabditis_elegans_76_235	(Roundworm)	2	2
Caenorhabditis_briggsae_2		1	1
Trichinella_spiralis_22		1	1
Hymenolepis_microstoma_		1	1
Echinococcus_multilocularis_		1	1
Echinococcus_granulosus_		1	1
Taenia_solium_	(Pork tapeworm)	1	1
Schistosoma_mansoni_		1	1
Mnemiopsis_leidyi	(Sea walnut)	1	1
Acropora_digitifera_v1.0		2	2
Nematostella_vectensis_1.0	(Starlet sea anemone)	1	1
Hydra_vulgaris		1	1
Amphimedon_queenslandica		1	1
Trichoplax_adhaerens_		1	1
Proterospongia_sp._ATCC_50818_		1	1
Capsaspora_owczarzaki_ATCC_30864_		1	1
Conidiobolus_coronatus_NRRL28638_v1.0		2	2
Mortierella_verticillata_NRRL_6337_		5	4
Phycomyces_blakesleeanus_		6	6
Rhizopus_oryzae_RA_99-880_		7	7
Mucor_circinelloides_		6	6
Rhizomucor_miehei_CAU432_		6	6
Malassezia_globosa_CBS_7966_		2	2
Sporisorium_reilianum_22		2	2
Ustilago_maydis_		2	2
Mixia_osmundae_IAM_14324_v1.0		3	2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0		2	2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_		3	3
Melampsora_laricis-populina_		2	2
Rhodotorula_graminis_WP1_v1.0		1	1
Sporobolomyces_roseus_IAM_13481_		1	1
Microbotryum_violaceum_22		1	1
Wallemia_sebi_v1.0		1	1
Sphaerobolus_stellatus_v1.0		2	2
Piloderma_croceum_F_1598_v1.0		2	2
Serpula_lacrymans_var._lacrymans_S7.9_		1	1
Coniophora_puteana		2	2
Hydnomerulius_pinastri_v2.0		2	2
Paxillus_rubicundulus_Ve08.2h10_v1.0		2	2
Pisolithus_microcarpus_441_v1.0		2	2
Pisolithus_tinctorius_Marx_270_v1.0		2	2
Scleroderma_citrinum_Foug_A_v1.0		2	2
Coprinopsis_cinerea_okayama7_130_v3		2	2
Pleurotus_ostreatus_	(Oyster mushroom)	2	2
Amanita_thiersii_Skay4041_v1.0		2	2
Amanita_muscaria_Koide_v1.0	(Fly agaric)	2	2
Galerina_marginata_v1.0		2	2
Hebeloma_cylindrosporum_h7_v2.0		2	2
Laccaria_bicolor_S238N-H82_		2	2
Agaricus_bisporus_var._bisporus_		2	2
Schizophyllum_commune_		2	2
Stereum_hirsutum_FP-91666_SS1__v1.0		2	2
Heterobasidion_annosum_		2	2
Gloeophyllum_trabeumv1.0		2	2
Punctularia_strigosozonata_v1.0		2	2
Sebacina_vermifera_MAFF_305830_v1.0		2	2
Fomitiporia_mediterranea_v1.0		2	2
Tulasnella_calospora_AL13/4D_v1.0		2	2
Postia_placenta_		3	3
Wolfiporia_cocos_MD-104_SS10__v1.0		2	2
Fomitopsis_pinicolav1.0		2	2
Fomitopsis_pinicola_FP-58527_SS1_v3.0		2	2
Phanerochaete_chrysosporium_RP-78_2.1		1	1
Dichomitus_squalens		2	2
Trametes_versicolor_v1.0		2	2
Tremella_mesenterica_	(Witches' butter)	2	2
Schizosaccharomyces_cryophilus_OY26_22		2	2
Schizosaccharomyces_octosporus_yFS286_		2	2
Schizosaccharomyces_japonicus_yFS275_		2	2
Schizosaccharomyces_pombe	(Fission yeast)	2	2
Catenaria_anguillulae_PL171_v1.0		1	1
Allomyces_macrogynus_ATCC_38327_		1	1
Spizellomyces_punctatus_DAOM_BR117_		2	1

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	1	1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)	(Fruit fly)	1	1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)	(African malaria mosquito)	1	1
Ascaris_suum_Victoria/Ghent_	(Pig roundworm)	1	1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)	(Roundworm)	2	2
Cryptococcus_neoformans_var._grubii_H99_		2	2
Cryptococcus_neoformans_B-3501A_		2	2
Cryptococcus_neoformans_JEC21_		2	2
Schizosaccharomyces_pombe_972h-_		2	2
Batrachochytrium_dendrobatidis_JEL423_		1	1
Batrachochytrium_dendrobatidis_JAM81_		1	1

Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	2	2
Pan_troglodytes_69_2.1.4	(Chimpanzee)	2	2
Gorilla_gorilla_69_3.1	(Western gorilla)	2	2
Pongo_abelii_69_2	(Sumatran orangutan)	3	3
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	2	2
Macaca_mulatta_69_1	(Rhesus monkey)	2	2
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	2	2
Otolemur_garnettii_69_3	(Small-eared galago)	2	2
Microcebus_murinus_69_1	(Gray mouse lemur)	2	2
Rattus_norvegicus_69_3.4	(Norway rat)	2	2
Mus_musculus_69_38	(House mouse)	3	3
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	2	2
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	2	2
Cavia_porcellus_69_3	(Domestic guinea pig)	2	2
Oryctolagus_cuniculus_69_2	(Rabbit)	2	2
Ochotona_princeps_69	(American pika)	2	2
Tupaia_belangeri_69	(Northern tree shrew)	2	2
Sus_scrofa_69_10.2	(Pig)	1	1
Bos_taurus_69_3.1	(Cattle)	2	2
Vicugna_pacos_69_1	(Alpaca)	2	2
Tursiops_truncatus_69_1	(Bottlenose dolphin)	2	2
Mustela_putorius_furo_69_1.0	(Domestic ferret)	2	2
Ailuropoda_melanoleuca_69_1	(Giant panda)	2	2
Canis_familiaris_69_3.1	(Dog)	2	2
Felis_catus_69	(Domestic cat)	3	2
Equus_caballus_69_2	(Horse)	2	2
Myotis_lucifugus_69_2.0	(Little brown bat)	2	2
Pteropus_vampyrus_69_1	(Large flying fox)	2	2
Sorex_araneus_69_1	(European shrew)	1	1
Erinaceus_europaeus_69	(Western European hedgehog)	2	2
Procavia_capensis_69_1	(Cape rock hyrax)	2	2
Loxodonta_africana_69_3	(African savanna elephant)	2	2
Echinops_telfairi_69	(Small Madagascar hedgehog)	1	1
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	1	1
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	2	2
Macropus_eugenii_69_1.0	(Tammar wallaby)	2	2
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	2	2
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	2	2
Ornithorhynchus_anatinus_69_5	(Platypus)	2	2
Meleagris_gallopavo_69_2	(Turkey)	2	2
Gallus_gallus_69_2	(Chicken)	2	2
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	2	2
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	2	2
Anolis_carolinensis_69_2.0	(Green anole)	2	2
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	1	1
Latimeria_chalumnae_69_1	(Coelacanth)	2	2
Gadus_morhua_69_1	(Atlantic cod)	1	1
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	2	2
Takifugu_rubripes_69_4	(Torafugu)	2	2
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	1	1
Oryzias_latipes_69_1	(Japanese medaka)	1	1
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	3	3
Oreochromis_niloticus_69_1.0	(Nile tilapia)	3	3
Danio_rerio_69_9	(Zebrafish)	3	3
Ciona_savignyi_69_2.0	(Pacific transparent sea squirt)	3	2
Ciona_intestinalis_69	(Vase tunicate)	2	2
Drosophila_melanogaster_69_5	(Fruit fly)	1	1
Caenorhabditis_elegans_69_215	(Roundworm)	1	1

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	14	14
Homo_sapiens__(NCBI_version)	(Human)	5	5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	3	3
Loa_loa_v3.3_(Request)	(Eye worm)	1	1
Wuchereria_bancrofti_v1.0_(Request)	(Agent of lymphatic filariasis)	1	1
Brugia_malayi_v1.0_(Duplicate)	(Agent of lymphatic filariasis)	1	1
Moniliophthora_perniciosa_FA553__(Genome_survey)		1	1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		32	32
STRING_v9.0.5_(STRING)		106	104
Uniprot_2018_03_genome		1363	1350
NCBI_2017_08_genome		1502	1499
TargetDB__(Targets)		1	1
PDB_chains_(SCOP_1.75)_(PDB)		2	2
Protein_Data_Bank_(all_PDB_sequenc)		15	15

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