Domain combinations for AbfB domain superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a AbfB domain domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	5	5
Pan_troglodytes_76_2.1.4	(Chimpanzee)	2	2
Gorilla_gorilla_76_3.1	(Western gorilla)	1	1
Pongo_abelii_76_2	(Sumatran orangutan)	1	1
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	2	2
Papio_anubis_76	(Olive baboon)	2	2
Macaca_mulatta_76_1	(Rhesus monkey)	1	1
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	3	3
Otolemur_garnettii_76_3	(Small-eared galago)	2	2
Microcebus_murinus_76_1	(Gray mouse lemur)	2	2
Rattus_norvegicus_76_5.0	(Norway rat)	2	2
Mus_musculus_76_38	(House mouse)	2	2
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	1	1
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	1	1
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	1	1
Cavia_porcellus_76_3	(Domestic guinea pig)	2	2
Oryctolagus_cuniculus_76_2	(Rabbit)	1	1
Ochotona_princeps_76	(American pika)	1	1
Sus_scrofa_76_10.2	(Pig)	3	3
Bos_taurus_76_3.1	(Cattle)	3	3
Ovis_aries_76_3.1	(Sheep)	2	2
Mustela_putorius_furo_76_1.0	(Domestic ferret)	2	2
Ailuropoda_melanoleuca_76_1	(Giant panda)	1	1
Canis_familiaris_76_3.1	(Dog)	2	2
Felis_catus_76_6.2	(Domestic cat)	2	2
Equus_caballus_76_2	(Horse)	1	1
Myotis_lucifugus_76_2.0	(Little brown bat)	3	3
Pteropus_vampyrus_76_1	(Large flying fox)	1	1
Loxodonta_africana_76_3	(African savanna elephant)	1	1
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	2	2
Macropus_eugenii_76_1.0	(Tammar wallaby)	1	1
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	1	1
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	2	2
Meleagris_gallopavo_76_2	(Turkey)	3	3
Gallus_gallus_76_4	(Chicken)	2	2
Anas_platyrhynchos_76_1.0	(Mallard)	2	2
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	2	2
Ficedula_albicollis_76_1.0	(Collared flycatcher)	2	2
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	3	3
Anolis_carolinensis_76_2.0	(Green anole)	2	2
Xenopus_laevis_	(African clawed frog)	2	2
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	3	3
Latimeria_chalumnae_76_1	(Coelacanth)	2	2
Lepisosteus_oculatus_76	(Spotted gar)	3	3
Gadus_morhua_76_1	(Atlantic cod)	2	2
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	3	3
Takifugu_rubripes_76_4	(Torafugu)	4	4
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	2	2
Oryzias_latipes_76_1	(Japanese medaka)	1	1
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	2	2
Poecilia_formosa_76	(Amazon molly)	2	2
Oreochromis_niloticus_76_1.0	(Nile tilapia)	3	3
Astyanax_mexicanus_76	(Mexican tetra)	2	2
Danio_rerio_76_9	(Zebrafish)	1	1
Ciona_intestinalis_76	(Vase tunicate)	2	2
Helobdella_robusta_		1	1
Mnemiopsis_leidyi	(Sea walnut)	2	2
Acropora_digitifera_v1.0		6	4
Nematostella_vectensis_1.0	(Starlet sea anemone)	4	3
Hydra_vulgaris		50	13
Amphimedon_queenslandica		4	3
Proterospongia_sp._ATCC_50818_		2	1
Monosiga_brevicollis_		1	1
Galerina_marginata_v1.0		7	7
Punctularia_strigosozonata_v1.0		2	2
Apiospora_montagnei_NRRL_25634_v1.0		1	1
Magnaporthe_poae_ATCC_64411_22		1	1
Magnaporthe_grisea_70-15_		2	2
Podospora_anserina_		1	1
Sporotrichum_thermophile_ATCC_42464_		1	1
Thielavia_terrestris_NRRL_8126_		1	1
Chaetomium_globosum_CBS_148.51_		1	1
Neurospora_tetrasperma_		1	1
Neurospora_discreta_FGSC_8579_		1	1
Neurospora_crassa_OR74A_		1	1
Cryphonectria_parasitica_	(Chestnut blight fungus)	1	1
Verticillium_albo-atrum_VaMs.102_		2	2
Verticillium_dahliae_VdLs.17_		2	2
Acremonium_alcalophilumv_1.0		1	1
Glomerella_graminicola_22		1	1
Fusarium_graminearum_		1	1
Nectria_haematococca_mpVI_		1	1
Fusarium_oxysporum_f._sp._lycopersici_4286_		1	1
Fusarium_verticillioides_7600_		1	1
Trichoderma_asperellum_CBS_433.97_v1.0		2	2
Trichoderma_atroviride_		2	2
Trichoderma_citrinoviride_v1.0		2	2
Trichoderma_reesei_1.2		2	2
Trichoderma_virens_Gv29-8_		2	2
Trichoderma_longibrachiatum_ATCC_18648_v1.0		2	2
Trichoderma_harzianum_CBS_226.95_v1.0		2	2
Botrytis_cinerea_B05.10_		1	1
Sclerotinia_sclerotiorum_		1	1
Didymella_exigua_CBS_183.55_v1.0		1	1
Setosphaeria_turcica_v1.0		1	1
Cochliobolus_miyabeanus_ATCC_44560_v1.0		1	1
Cochliobolus_victoriae_FI3_v1.0		1	1
Cochliobolus_carbonum_26-R-13_v1.0		1	1
Cochliobolus_heterostrophus_	(Southern corn leaf blight pathogen)	1	1
Alternaria_brassicicola_		1	1
Cochliobolus_lunatus_m118_v2.0		1	1
Pyrenophora_teres_f._teres_22		1	1
Pyrenophora_tritici-repentis_		1	1
Stagonospora_nodorum_		1	1
Zasmidium_cellare_ATCC_36951_v1.0		4	4
Dothistroma_septosporum		1	1
Septoria_musiva_v1.0		1	1
Mycosphaerella_fijiensis_CIRAD86_		1	1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0		1	1
Aspergillus_zonatus_v1.0		1	1
Penicillium_chrysogenum_Wisconsin_54-1255_		1	1
Penicillium_chrysogenum_v1.0		1	1
Aspergillus_acidus_v1.0		1	1
Aspergillus_fumigatus_Af293		1	1
Aspergillus_brasiliensis_v1.0		1	1
Aspergillus_nidulans_FGSC_A4_		1	1
Aspergillus_sydowii_v1.0		1	1
Aspergillus_versicolor_v1.0		1	1
Aspergillus_carbonarius_ITEM_5010_		1	1
Neosartorya_fischeri_NRRL_181_		1	1
Aspergillus_terreus_NIH2624_		1	1
Aspergillus_tubingensis_v1.0		1	1
Aspergillus_oryzae_RIB40_		2	2
Aspergillus_niger_22		1	1
Aspergillus_flavus_NRRL3357_		2	2
Aspergillus_clavatus_NRRL_1_		1	1
Penicillium_marneffei_ATCC_18224_		4	4
Selaginella_moellendorffii_		6	6
Pinus_taeda	(Loblolly pine)	2	2
Picea_abies	(Norway spruce)	4	4
Eucalyptus_grandis_v201	(Rose gum)	3	3
Theobroma_cacao_B97-61/B2_v1	(Cacao)	2	2
Gossypium_raimondii_v221		4	4
Citrus_clementina_v165		6	6
Citrus_sinensis_v154	(Sweet orange)	11	11
Brassica_rapa_Chiifu-401_1.2	(Field mustard)	2	2
Capsella_rubella_v183		1	1
Arabidopsis_thaliana_10	(Thale cress)	1	1
Carica_papaya_	(Papaya)	2	2
Medicago_truncatula_	(Barrel medic)	2	2
Phaseolus_vulgaris_v186	(French bean)	4	4
Glycine_max_v109	(Soybean)	3	3
Fragaria_vesca_	(Wild strawberry)	1	1
Malus_domestica_v196	(Apple)	4	4
Prunus_persica_v139	(Peach)	1	1
Linum_usitatissimum_v200	(Flax)	2	2
Manihot_esculenta_v147	(Cassava)	2	2
Populus_trichocarpa_v156	(Black cottonwood)	2	2
Vitis_vinifera_	(Wine grape)	1	1
Mimulus_guttatus_v140	(Spotted monkey flower)	2	2
Solanum_lycopersicum_v.2.3	(Tomato)	1	1
Solanum_tuberosum_	(Potato)	2	2
Actinidia_chinensis_Hongyang_		2	2
Aquilegia_coerulea_v195		2	2
Triticum_aestivum_22	(Bread wheat)	1	1
Oryza_barthii_22	(African wild rice)	1	1
Oryza_meridionalis_22		2	2
Oryza_glumaepatula_22		1	1
Oryza_glaberrima	(African rice)	2	2
Oryza_punctata_22		4	4
Oryza_nivara_22		2	2
Oryza_brachyantha_22	(Malo sina)	1	1
Oryza_sativa_ssp._japonica_5.0	(Japanese rice)	1	1
Oryza_sativa_v193	(Rice)	1	1
Phyllostachys_heterocyclavar._pubescens	(Kikko-chiku)	2	2
Panicum_virgatum_v202	(Switchgrass)	3	3
Setaria_italica_v164	(Foxtail millet)	1	1
Zea_mays_subsp._mays_	(Maize)	4	4
Zea_mays_v181	(Maize)	5	5
Sorghum_bicolor_	(Sorghum)	1	1
Musa_balbisiana	(Balbis banana)	4	4
Musa_acuminata_22	(Wild Malaysian banana)	4	4
Amborella_trichopoda_22		3	3
Physcomitrella_patens		1	1
Volvox_carteri_f._nagariensis_		1	1
Volvox_carteri_v199		1	1
Chlamydomonas_reinhardtii_4.0		2	2
Perkinsus_marinus_ATCC_50983_		1	1
Symbiodinium_minutum_clade_B1_v1.2		3	3
Emiliania_huxleyi_CCMP1516_		2	2
Synechocystis_sp._PCC_6803		1	1
Nostoc_sp._PCC_7107		2	1
Anabaena_sp._90		2	1
Catenulispora_acidiphila_DSM_44928		1	1
Frankia_sp._EAN1pec		2	2
Kitasatospora_setae_KM-6054		1	1
Streptomyces_sp._PAMC26508		1	1
Streptomyces_flavogriseus_ATCC_33331		1	1
Streptomyces_sp._SirexAA-E		1	1
Streptomyces_griseus_subsp._griseus_NBRC_13350		1	1
Streptomyces_bingchenggensis_BCW-1		1	1
Streptomyces_violaceusniger_Tu_4113		2	2
Streptomyces_avermitilis_MA-4680		3	3
Streptomyces_scabiei_87.22		9	9
Streptomyces_hygroscopicus_subsp._jinggangensis_5008		2	2
Actinosynnema_mirum_DSM_43827		4	3
Amycolatopsis_mediterranei_U32		4	4
Kribbella_flavida_DSM_17836		4	1
Verrucosispora_maris_AB-18-032		3	3
Micromonospora_sp._L5		3	3
Micromonospora_aurantiaca_ATCC_27029		3	3
Actinoplanes_sp._N902-109		4	4
Actinoplanes_sp._SE50/110		5	5
Actinoplanes_missouriensis_431		5	5
Corynebacterium_ulcerans_0102		1	1
Corynebacterium_diphtheriae_NCTC_13129		1	1
Jonesia_denitrificans_DSM_20603		1	1
Renibacterium_salmoninarum_ATCC_33209		1	1
Clostridium_clariflavum_DSM_19732		3	3
Clostridium_thermocellum_ATCC_27405		4	4
Roseburia_hominis_A2-183		1	1
Butyrivibrio_fibrisolvens		1	1
Paenibacillus_mucilaginosus_3016		4	4
Zobellia_galactanivorans		1	1
Sorangium_cellulosum_'So_ce_56'		1	1
Stigmatella_aurantiaca_DW4/3-1		11	8
Burkholderia_glumae_BGR1		1	1
Idiomarina_loihiensis_L2TR		1	1
Hahella_chejuensis_KCTC_2396		2	2

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	2	2
Theobroma_cacao_Matina_1-6_v0.9	(Cacao)	3	3
Oryza_sativa_ssp._Indica_(Subspecies)	(Long-grained rice)	1	1
Synechocystis_sp._PCC_6803_substr._PCC-P		1	1
Synechocystis_sp._PCC_6803_substr._PCC-N		1	1
Synechocystis_sp._PCC_6803_substr._GT-I		1	1
Synechocystis_sp._PCC_6803		1	1
Streptomyces_albus_J1074		1	1
Streptomyces_rapamycinicus_NRRL_5491		2	2
Streptomyces_davawensis_JCM_4913		9	8
Streptomyces_fulvissimus_DSM_40593		1	1
Streptomyces_venezuelae_ATCC_10712		2	2
Streptomyces_collinus_Tu_365		2	2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01		2	2
Amycolatopsis_mediterranei_RB		4	4
Amycolatopsis_mediterranei_S699		4	4
Amycolatopsis_mediterranei_S699		4	4
Amycolatopsis_orientalis_HCCB10007		5	4
Actinoplanes_friuliensis_DSM_7358		7	6
Corynebacterium_ulcerans_BR-AD22		1	1
Corynebacterium_ulcerans_809		1	1
Corynebacterium_diphtheriae_INCA_402		1	1
Corynebacterium_diphtheriae_HC01		1	1
Corynebacterium_diphtheriae_241		1	1
Clostridium_thermocellum_DSM_1313		4	4
Paenibacillus_sp._Y412MC10		1	1
Paenibacillus_mucilaginosus_KNP414		4	4
Paenibacillus_mucilaginosus_K02		4	4
Sorangium_cellulosum_So0157-2		2	2
Variovorax_paradoxus_EPS		1	1
Idiomarina_loihiensis_GSL_199		1	1

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Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	2	2
Pan_troglodytes_69_2.1.4	(Chimpanzee)	2	2
Gorilla_gorilla_69_3.1	(Western gorilla)	1	1
Pongo_abelii_69_2	(Sumatran orangutan)	1	1
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	2	2
Macaca_mulatta_69_1	(Rhesus monkey)	1	1
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	2	2
Otolemur_garnettii_69_3	(Small-eared galago)	2	2
Microcebus_murinus_69_1	(Gray mouse lemur)	2	2
Rattus_norvegicus_69_3.4	(Norway rat)	2	2
Mus_musculus_69_38	(House mouse)	2	2
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	1	1
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	1	1
Cavia_porcellus_69_3	(Domestic guinea pig)	2	2
Oryctolagus_cuniculus_69_2	(Rabbit)	1	1
Ochotona_princeps_69	(American pika)	1	1
Sus_scrofa_69_10.2	(Pig)	2	2
Bos_taurus_69_3.1	(Cattle)	2	2
Mustela_putorius_furo_69_1.0	(Domestic ferret)	2	2
Ailuropoda_melanoleuca_69_1	(Giant panda)	1	1
Canis_familiaris_69_3.1	(Dog)	1	1
Felis_catus_69	(Domestic cat)	1	1
Equus_caballus_69_2	(Horse)	1	1
Myotis_lucifugus_69_2.0	(Little brown bat)	3	3
Pteropus_vampyrus_69_1	(Large flying fox)	1	1
Loxodonta_africana_69_3	(African savanna elephant)	1	1
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	1	1
Macropus_eugenii_69_1.0	(Tammar wallaby)	1	1
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	1	1
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	2	2
Meleagris_gallopavo_69_2	(Turkey)	2	2
Gallus_gallus_69_2	(Chicken)	2	2
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	2	2
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	2	2
Anolis_carolinensis_69_2.0	(Green anole)	2	2
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	3	3
Latimeria_chalumnae_69_1	(Coelacanth)	2	2
Gadus_morhua_69_1	(Atlantic cod)	2	2
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	2	2
Takifugu_rubripes_69_4	(Torafugu)	2	2
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	2	2
Oryzias_latipes_69_1	(Japanese medaka)	1	1
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	2	2
Oreochromis_niloticus_69_1.0	(Nile tilapia)	2	2
Danio_rerio_69_9	(Zebrafish)	1	1
Ciona_intestinalis_69	(Vase tunicate)	2	2
Arabidopsis_thaliana_10	(Thale cress)	1	1

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	5	5
Homo_sapiens__(NCBI_version)	(Human)	3	3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	2	2
Malus_x_domestica_(Duplicate)	(Apple)	4	4
Ricinus_communis__(Early_assembly)	(Castor bean)	1	1
Nicotiana_benthamiana_0.4.4_(Early_draft)		3	3
Solanum_pimpinellifolium_A-1.0_(Early_draft)	(Currant tomato)	1	1
Solanum_lycopersicum_v2.3_(Early_assembly)	(Tomato)	1	1
Phoenix_dactylifera__(Early_draft)	(Date palm)	2	2
Protein_Data_Bank_(all_PDB_sequenc)		16	16
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		36	36
PDB_chains_(SCOP_1.75)_(PDB)		2	2
STRING_v9.0.5_(STRING)		151	105
TargetDB__(Targets)		5	5
Uniprot_2018_03_genome		2696	2486
NCBI_2017_08_genome		3993	3684

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