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Domain combinations for Dystroglycan, domain 2 superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Dystroglycan, domain 2 domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   6 6
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2 2
Papio_anubis_76   (Olive baboon)   1 1
Macaca_mulatta_76_1   (Rhesus monkey)   1 1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2 2
Otolemur_garnettii_76_3   (Small-eared galago)   1 1
Microcebus_murinus_76_1   (Gray mouse lemur)   1 1
Rattus_norvegicus_76_5.0   (Norway rat)   1 1
Mus_musculus_76_38   (House mouse)   3 3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_76_2   (Rabbit)   1 1
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   1 1
Sus_scrofa_76_10.2   (Pig)   1 1
Bos_taurus_76_3.1   (Cattle)   1 1
Ovis_aries_76_3.1   (Sheep)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1 1
Canis_familiaris_76_3.1   (Dog)   1 1
Felis_catus_76_6.2   (Domestic cat)   1 1
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   1 1
Loxodonta_africana_76_3   (African savanna elephant)   1 1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2 2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   1 1
Saccoglossus_kowalevskii_v3.0 3 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   3 3
Gallus_gallus_76_4   (Chicken)   2 2
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   2 2
Xenopus_laevis_   (African clawed frog)   6 6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_76_1   (Coelacanth)   3 3
Lepisosteus_oculatus_76   (Spotted gar)   3 3
Gadus_morhua_76_1   (Atlantic cod)   2 2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_76_4   (Torafugu)   4 4
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2 2
Oryzias_latipes_76_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 2
Poecilia_formosa_76   (Amazon molly)   2 2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Danio_rerio_76_9   (Zebrafish)   2 2
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2 2
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   1 1
Helobdella_robusta_ 1 1
Capitella_sp._I_ 1 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Strigamia_maritima_22 1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Trichoplax_adhaerens_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3 3

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   1 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1 1
Macaca_mulatta_69_1   (Rhesus monkey)   1 1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1 1
Otolemur_garnettii_69_3   (Small-eared galago)   1 1
Microcebus_murinus_69_1   (Gray mouse lemur)   1 1
Rattus_norvegicus_69_3.4   (Norway rat)   1 1
Mus_musculus_69_38   (House mouse)   1 1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_69_2   (Rabbit)   1 1
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   1 1
Sus_scrofa_69_10.2   (Pig)   1 1
Bos_taurus_69_3.1   (Cattle)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1 1
Canis_familiaris_69_3.1   (Dog)   1 1
Felis_catus_69   (Domestic cat)   1 1
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   1 1
Loxodonta_africana_69_3   (African savanna elephant)   1 1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1 1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   1 1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_69_1   (Coelacanth)   2 2
Gadus_morhua_69_1   (Atlantic cod)   2 2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_69_4   (Torafugu)   2 2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2 2
Oryzias_latipes_69_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   6 6
Homo_sapiens__(NCBI_version)   (Human)   13 13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1 1
Uniprot_2018_03_genome 413 411
NCBI_2017_08_genome 1132 1132
TargetDB__(Targets) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 5 5
PDB_chains_(SCOP_1.75)_(PDB) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 7 7
STRING_v9.0.5_(STRING) 40 40

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