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Domain combinations for WRKY DNA-binding domain superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a WRKY DNA-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Meloidogyne_hapla_ 2 2
Mortierella_verticillata_NRRL_6337_ 2 2
Phycomyces_blakesleeanus_ 6 6
Rhizopus_oryzae_RA_99-880_ 6 6
Mucor_circinelloides_ 4 4
Rhizomucor_miehei_CAU432_ 4 4
Dictyostelium_discoideum 2 1
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 42 35
Pinus_taeda   (Loblolly pine)   104 90
Picea_abies   (Norway spruce)   55 50
Eucalyptus_grandis_v201   (Rose gum)   125 102
Theobroma_cacao_B97-61/B2_v1   (Cacao)   71 61
Gossypium_raimondii_v221 277 219
Citrus_clementina_v165 76 65
Citrus_sinensis_v154   (Sweet orange)   118 93
Thellungiella_halophila_v173 83 70
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   172 145
Capsella_rubella_v183 95 79
Arabidopsis_lyrata_   (Lyrate rockcress)   92 80
Arabidopsis_thaliana_10   (Thale cress)   111 91
Carica_papaya_   (Papaya)   56 50
Medicago_truncatula_   (Barrel medic)   168 140
Phaseolus_vulgaris_v186   (French bean)   115 97
Glycine_max_v109   (Soybean)   230 196
Cucumis_sativus_v122   (Cucumber)   109 88
Fragaria_vesca_   (Wild strawberry)   76 62
Malus_domestica_v196   (Apple)   167 140
Prunus_persica_v139   (Peach)   71 61
Linum_usitatissimum_v200   (Flax)   140 108
Manihot_esculenta_v147   (Cassava)   129 111
Populus_trichocarpa_v156   (Black cottonwood)   145 117
Vitis_vinifera_   (Wine grape)   70 59
Mimulus_guttatus_v140   (Spotted monkey flower)   76 64
Solanum_lycopersicum_v.2.3   (Tomato)   96 81
Solanum_tuberosum_   (Potato)   153 130
Actinidia_chinensis_Hongyang_ 127 106
Aquilegia_coerulea_v195 90 57
Triticum_urartu_22 98 86
Triticum_aestivum_22   (Bread wheat)   200 169
Aegilops_tauschii_22 106 92
Brachypodium_distachyon_   (Stiff brome)   105 87
Oryza_barthii_22   (African wild rice)   125 106
Oryza_meridionalis_22 139 123
Oryza_glumaepatula_22 135 118
Oryza_glaberrima   (African rice)   99 87
Oryza_punctata_22 119 106
Oryza_nivara_22 139 121
Oryza_brachyantha_22   (Malo sina)   100 89
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   150 130
Oryza_sativa_v193   (Rice)   149 129
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   137 116
Panicum_virgatum_v202   (Switchgrass)   199 180
Setaria_italica_v164   (Foxtail millet)   127 113
Zea_mays_subsp._mays_   (Maize)   171 152
Zea_mays_v181   (Maize)   187 164
Sorghum_bicolor_   (Sorghum)   103 93
Musa_balbisiana   (Balbis banana)   183 155
Musa_acuminata_22   (Wild Malaysian banana)   179 153
Amborella_trichopoda_22 39 33
Physcomitrella_patens 40 37
Coccomyxa_subellipsoidea_sp._C-169_v2 2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 3 3
Chlorella_variabilis_sp._NC64A_ 2 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 3 2
Chlamydomonas_reinhardtii_4.0 2 1
Ostreococcus_sp._RCC809_ 3 3
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Thecamonas_trahens_ATCC_50062_ 2 2
Giardia_lamblia_2.3 2 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   71 61
Hordeum_vulgare_22   (Domesticated barley)   149 127
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   128 113

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   86 73

Others
Genome     Number   Proteins
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 83 72
Malus_x_domestica_(Duplicate)   (Apple)   167 140
Ricinus_communis__(Early_assembly)   (Castor bean)   69 58
Nicotiana_benthamiana_0.4.4_(Early_draft) 166 137
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   92 78
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   96 81
Phoenix_dactylifera__(Early_draft)   (Date palm)   68 54
TargetDB__(Targets) 7 6
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 11 11
STRING_v9.0.5_(STRING) 865 744
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_2017_08_genome 11127 9096
Uniprot_2018_03_genome 14382 12097
Protozoadb_2010_08_(Protozoadb) 4 2
Protein_Data_Bank_(all_PDB_sequenc) 5 5

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