SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Vng1086c-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Vng1086c-like domain in that genome.

Complete genomes
Genome     Number   Proteins
halophilic_archaeon_DL31 3 3
Methanocella_arvoryzae_MRE50 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanohalophilus_mahii_DSM_5219 1 1
Methanosphaerula_palustris_E1-9c 2 2
Methanoregula_boonei_6A8 2 2
Methanospirillum_hungatei_JF-1 2 2
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 2 2
Methanoculleus_bourgensis_MS2 2 2
Methanoculleus_marisnigri_JR1 1 1
Methanopyrus_kandleri_AV19 1 1
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_veneficus_SNP6 2 2
Archaeoglobus_fulgidus_DSM_4304 2 2
Salinarchaeum_sp._Harcht-Bsk1 2 2
Halopiger_xanaduensis_SH-6 2 2
Haloterrigena_turkmenica_DSM_5511 2 2
Natrinema_sp._J7-2 2 2
Natrialba_magadii_ATCC_43099 2 2
Halorubrum_lacusprofundi_ATCC_49239 3 3
Haloquadratum_walsbyi_DSM_16790 2 2
Halogeometricum_borinquense_DSM_11551 3 3
Haloferax_mediterranei_ATCC_33500 3 3
Haloferax_volcanii_DS2 3 3
Halomicrobium_mukohataei_DSM_12286 2 2
Halorhabdus_utahensis_DSM_12940 3 3
Natronomonas_pharaonis_DSM_2160 2 2
Haloarcula_hispanica_ATCC_33960 3 3
Haloarcula_marismortui_ATCC_43049 3 3
Halalkalicoccus_jeotgali_B3 2 2
Halobacterium_salinarum_R1 2 2
Halobacterium_sp._NRC-1 2 2
Methanotorris_igneus_Kol_5 2 2
Methanocaldococcus_sp._FS406-22 2 2
Methanocaldococcus_fervens_AG86 2 2
Methanocaldococcus_vulcanius_M7 2 2
methanocaldococcus_infernus_ME 2 2
Methanocaldococcus_jannaschii_DSM_2661 2 2
Methanothermococcus_okinawensis_IH1 2 2
Methanococcus_aeolicus_Nankai-3 2 2
Methanococcus_maripaludis_C5 2 2
Methanococcus_voltae_A3 3 3
Methanococcus_vannielii_SB 2 2
Methanothermus_fervidus_DSM_2088 1 1
Methanothermobacter_marburgensis_str._Marburg 1 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_ruminantium_M1 1 1
Methanobrevibacter_smithii_ATCC_35061 1 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanolobus_psychrophilus_R15 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2 2
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Halovivax_ruber_XH-70 2 2
Natrinema_pellirubrum_DSM_15624 3 3
Natronococcus_occultus_SP4 2 2
Natronobacterium_gregoryi_SP2 2 2
Haloquadratum_walsbyi_C23 2 2
Halorhabdus_tiamatea_SARL4B 2 2
Natronomonas_moolapensis_8.8.11 2 2
Haloarcula_hispanica_N601 3 3
Methanococcus_maripaludis_X1 2 2
Methanococcus_maripaludis_C6 2 2
Methanococcus_maripaludis_C7 2 2
Methanococcus_maripaludis_S2 2 2
Methanobacterium_sp._SWAN-1 1 1

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6 6
TargetDB__(Targets) 13 13
STRING_v9.0.5_(STRING) 54 54
Uniprot_2018_03_genome 738 738
NCBI_2017_08_genome 833 833
PDB_chains_(SCOP_1.75)_(PDB) 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]