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Domain combinations for PE/PPE dimer-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PE/PPE dimer-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Tulasnella_calospora_AL13/4D_v1.0 1 1
Kitasatospora_setae_KM-6054 2 2
Streptomyces_sp._SirexAA-E 1 1
Actinosynnema_mirum_DSM_43827 11 11
Saccharomonospora_viridis_DSM_43017 4 4
Saccharopolyspora_erythraea_NRRL_2338 8 8
Amycolatopsis_mediterranei_U32 6 6
Actinoplanes_missouriensis_431 1 1
Segniliparus_rotundus_DSM_44985 4 4
Tsukamurella_paurometabola_DSM_20162 2 2
Gordonia_sp._KTR9 2 2
Gordonia_polyisoprenivorans_VH2 3 3
Gordonia_bronchialis_DSM_43247 2 2
Rhodococcus_jostii_RHA1 2 2
Rhodococcus_equi_103S 3 3
Rhodococcus_opacus_B4 4 4
Rhodococcus_erythropolis_PR4 1 1
Nocardia_cyriacigeorgica_GUH-2 5 5
Nocardia_farcinica_IFM_10152 5 5
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_massiliense_str._GO_06 9 9
Mycobacterium_abscessus_ATCC_19977 11 11
Mycobacterium_sp._JLS 4 4
Mycobacterium_intracellulare_ATCC_13950 51 51
Mycobacterium_avium_104 42 42
Mycobacterium_vanbaalenii_PYR-1 4 4
Mycobacterium_canettii_CIPT_140010059 147 147
Mycobacterium_africanum_GM041182 140 140
Mycobacterium_tuberculosis_KZN_1435 156 156
Mycobacterium_tuberculosis 157 157
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 145 145
Mycobacterium_rhodesiae_NBB3 5 5
Mycobacterium_ulcerans_Agy99 111 111
Mycobacterium_gilvum_PYR-GCK 7 7
Mycobacterium_chubuense_NBB4 3 3
Mycobacterium_marinum_M 269 269
Mycobacterium_smegmatis_str._MC2_155 3 3
Mycobacterium_leprae_Br4923 11 11
[Cellvibrio]_gilvus_ATCC_13127 1 1

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Strains
Genome     Number   Proteins
Saccharothrix_espanaensis_DSM_44229 11 11
Amycolatopsis_mediterranei_RB 6 6
Amycolatopsis_mediterranei_S699 6 6
Amycolatopsis_mediterranei_S699 6 6
Amycolatopsis_orientalis_HCCB10007 3 3
Rhodococcus_pyridinivorans_SB3094 1 1
Rhodococcus_erythropolis_CCM2595 1 1
Nocardia_brasiliensis_ATCC_700358 5 5
Mycobacterium_sp._MOTT36Y 60 60
Mycobacterium_sp._JDM601 57 57
Mycobacterium_abscessus_subsp._bolletii_50594 12 12
Mycobacterium_liflandii_128FXT 159 159
Mycobacterium_sp._KMS 9 9
Mycobacterium_sp._MCS 6 6
Mycobacterium_yongonense_05-1390 72 72
Mycobacterium_intracellulare_MOTT-64 52 52
Mycobacterium_indicus_pranii_MTCC_9506 62 62
Mycobacterium_intracellulare_MOTT-02 51 51
Mycobacterium_avium_subsp._paratuberculosis_MAP4 42 41
Mycobacterium_avium_subsp._paratuberculosis_K-10 46 45
Mycobacterium_canettii_CIPT_140070017 148 148
Mycobacterium_canettii_CIPT_140060008 148 148
Mycobacterium_canettii_CIPT_140070008 138 138
Mycobacterium_canettii_CIPT_140070010 147 147
Mycobacterium_tuberculosis_EAI5/NITR206 151 151
Mycobacterium_tuberculosis_EAI5 124 124
Mycobacterium_tuberculosis_CAS/NITR204 135 135
Mycobacterium_tuberculosis_str._Beijing/NITR203 151 151
Mycobacterium_tuberculosis_UT205 96 96
Mycobacterium_tuberculosis_RGTB423 124 124
Mycobacterium_tuberculosis_RGTB327 118 118
Mycobacterium_tuberculosis_CTRI-2 151 151
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 150 150
Mycobacterium_tuberculosis_KZN_605 154 154
Mycobacterium_tuberculosis_KZN_4207 154 154
Mycobacterium_tuberculosis_CCDC5180 139 139
Mycobacterium_tuberculosis_CCDC5079 161 161
Mycobacterium_tuberculosis_CCDC5079 161 161
Mycobacterium_tuberculosis_H37Ra 155 155
Mycobacterium_tuberculosis_str._Haarlem/NITR202 124 124
Mycobacterium_tuberculosis_str._Haarlem 148 148
Mycobacterium_tuberculosis_F11 156 156
Mycobacterium_tuberculosis_H37Rv 152 152
Mycobacterium_tuberculosis_CDC1551 140 140
Mycobacterium_bovis_AF2122/97 150 150
Mycobacterium_bovis_BCG_str._Korea_1168P 146 146
Mycobacterium_bovis_BCG_str._Mexico 147 147
Mycobacterium_bovis_BCG_str._Tokyo_172 147 147
Mycobacterium_gilvum_Spyr1 4 4
Mycobacterium_smegmatis_str._MC2_155 3 3
Mycobacterium_leprae_TN 11 11
Mycobacterium_kansasii_ATCC_12478 235 235

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Others
Genome     Number   Proteins
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 152 152
NCBI_plasmid_sequences_(Plasmids) 26 26
Protein_Data_Bank_(all_PDB_sequenc) 25 25
UniProt__viral_sequences_(Viral) 1 1
TargetDB__(Targets) 120 120
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 39 39
NCBI_viral_sequences_(Viral) 3 3
STRING_v9.0.5_(STRING) 1773 1772
Uniprot_2018_03_genome 23883 23875
NCBI_2017_08_genome 779536 779457
PDB_chains_(SCOP_1.75)_(PDB) 2 2

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