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Domain combinations for YidB-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YidB-like domain in that genome.

Complete genomes
Genome Number Proteins

Helobdella_robusta_ 1 1

Ilumatobacter_coccineus 1 1

Catenulispora_acidiphila_DSM_44928 2 2

Gemmatimonas_aurantiaca_T-27 1 1

Ignavibacterium_album_JCM_16511 1 1

Chlorobium_phaeobacteroides_DSM_266 1 1

Chlorobium_limicola_DSM_245 1 1

Prosthecochloris_aestuarii_DSM_271 1 1

Fibrella_aestuarina 1 1

Runella_slithyformis_DSM_19594 1 1

Ornithobacterium_rhinotracheale_DSM_15997 1 1

Flavobacterium_psychrophilum_JIP02/86 1 1

Flavobacterium_columnare_ATCC_49512 1 1

Phycisphaera_mikurensis_NBRC_102666 1 1

Turneriella_parva_DSM_21527 2 2

Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1

Granulicella_tundricola_MP5ACTX9 1 1

Granulicella_mallensis_MP5ACTX8 1 1

Candidatus_Nitrospira_defluvii 1 1

Nitratifractor_salsuginis_DSM_16511 1 1

Sulfurovum_sp._NBC37-1 1 1

Geobacter_sp._M21 1 1

Geobacter_bemidjiensis_Bem 1 1

Geobacter_metallireducens_GS-15 1 1

Pelobacter_propionicus_DSM_2379 1 1

Dechloromonas_aromatica_RCB 2 2

Pseudogulbenkiania_sp._NH8B 1 1

Laribacter_hongkongensis_HLHK9 1 1

Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1

Methylibium_petroleiphilum_PM1 1 1

Thiomonas_arsenitoxydans 1 1

Thiomonas_intermedia_K12 1 1

Rubrivivax_gelatinosus_IL144 1 1

Leptothrix_cholodnii_SP-6 1 1

Burkholderia_phytofirmans_PsJN 1 1

Burkholderia_phymatum_STM815 1 1

Burkholderia_xenovorans_LB400 1 1

Ralstonia_eutropha_JMP134 1 1

Cupriavidus_taiwanensis_LMG_19424 1 1

Cupriavidus_metallidurans_CH34 1 1

Cupriavidus_necator_N-1 1 1

Ralstonia_eutropha_H16 1 1

Ralstonia_pickettii_12D 1 1

Ralstonia_solanacearum_CFBP2957 1 1

Burkholderia_sp._RPE64 1 1

Burkholderia_sp._CCGE1002 1 1

Burkholderia_thailandensis_E264 1 1

Burkholderia_pseudomallei_1106a 1 1

Burkholderia_mallei_SAVP1 1 1

Burkholderia_ambifaria_AMMD 1 1

Burkholderia_cenocepacia_HI2424 1 1

Burkholderia_multivorans_ATCC_17616 1 1

Burkholderia_vietnamiensis_G4 1 1

Burkholderia_gladioli_BSR3 1 1

Burkholderia_glumae_BGR1 1 1

Ramlibacter_tataouinensis_TTB310 1 1

Polaromonas_naphthalenivorans_CJ2 1 1

Variovorax_paradoxus_S110 1 1

Rhodoferax_ferrireducens_T118 1 1

Acidovorax_sp._KKS102 1 1

Collimonas_fungivorans_Ter331 1 1

Janthinobacterium_sp._Marseille 1 1

Pusillimonas_sp._T7-7 1 1

Advenella_kashmirensis_WT001 1 1

Bordetella_pertussis_Tohama_I 1 1

Bordetella_parapertussis_12822 1 1

Bordetella_bronchiseptica_RB50 1 1

Achromobacter_xylosoxidans_A8 1 1

Achromobacter_xylosoxidans 1 1

Methylotenera_versatilis_301 1 1

Methylotenera_mobilis_JLW8 1 1

Methylovorus_sp._MP688 1 1

Methylovorus_glucosetrophus_SIP3-4 1 1

Methylobacillus_flagellatus_KT 1 1

Asticcacaulis_excentricus_CB_48 1 1

Jannaschia_sp._CCS1 1 1

Gluconacetobacter_xylinus_NBRC_3288 3 3

Gluconacetobacter_diazotrophicus_PAl_5 5 5

Acidiphilium_multivorum_AIU301 1 1

Acidiphilium_cryptum_JF-5 1 1

Gluconobacter_oxydans_621H 2 2

Acetobacter_pasteurianus_IFO_3283-01 2 2

Starkeya_novella_DSM_506 1 1

Xanthobacter_autotrophicus_Py2 1 1

Methylobacterium_chloromethanicum_CM4 1 1

Methylobacterium_extorquens_AM1 1 1

Methylobacterium_sp._4-46 3 3

Methylobacterium_populi_BJ001 4 4

Methylobacterium_nodulans_ORS_2060 2 2

Methylobacterium_radiotolerans_JCM_2831 4 4

Ochrobactrum_anthropi_ATCC_49188 1 1

Brucella_microti_CCM_4915 1 1

Brucella_pinnipedialis_B2/94 1 1

Brucella_canis_ATCC_23365 1 1

Brucella_suis_ATCC_23445 1 1

Brucella_melitensis_ATCC_23457 1 1

Brucella_ovis_ATCC_25840 1 1

Brucella_abortus_S19 1 1

Sinorhizobium_medicae_WSM419 1 1

Sinorhizobium_meliloti_AK83 1 1

Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1

Rhizobium_etli_CIAT_652 1 1

Rhizobium_leguminosarum_bv._viciae_3841 1 1

Mesorhizobium_opportunistum_WSM2075 1 1

Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1

Mesorhizobium_loti_MAFF303099 4 4

Methylocella_silvestris_BL2 1 1

Rhodomicrobium_vannielii_ATCC_17100 1 1

Hyphomicrobium_sp._MC1 1 1

Oligotropha_carboxidovorans_OM4 1 1

Rhodopseudomonas_palustris_BisA53 1 1

Nitrobacter_winogradskyi_Nb-255 1 1

Nitrobacter_hamburgensis_X14 2 2

Bradyrhizobium_japonicum_USDA_110 3 3

Bradyrhizobium_sp._ORS_278 2 2

Methylocystis_sp._SC2 1 1

Actinobacillus_succinogenes_130Z 1 1

Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1 1

Ferrimonas_balearica_DSM_9799 1 1

Shewanella_violacea_DSS12 1 1

Rhodanobacter_denitrificans 1 1

Frateuria_aurantia_DSM_6220 1 1

Xenorhabdus_nematophila_ATCC_19061 1 1

Providencia_stuartii_MRSN_2154 1 1

Proteus_mirabilis_HI4320 1 1

Serratia_sp._AS12 1 1

Serratia_plymuthica_AS9 1 1

Serratia_proteamaculans_568 1 1

Pantoea_sp._At-9b 1 1

Pantoea_vagans_C9-1 2 2

Erwinia_tasmaniensis_Et1/99 1 1

Erwinia_sp._Ejp617 1 1

Erwinia_pyrifoliae_Ep1/96 1 1

Erwinia_amylovora_ATCC_49946 1 1

Escherichia_blattae_DSM_4481 1 1

Enterobacteriaceae_bacterium_strain_FGI_57 1 1

Shigella_sonnei_Ss046 1 1

Shigella_flexneri_5_str._8401 1 1

Shigella_dysenteriae_Sd197 1 1

Shigella_boydii_CDC_3083-94 1 1

Enterobacter_aerogenes_KCTC_2190 2 2

Escherichia_fergusonii_ATCC_35469 1 1

Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1

Pseudomonas_aeruginosa_UCBPP-PA14 1 1

Psychrobacter_sp._G 1 1

Psychrobacter_sp._PRwf-1 1 1

Psychrobacter_arcticus_273-4 1 1

Psychrobacter_cryohalolentis_K5 1 1

Moraxella_catarrhalis_RH4 1 1

Acinetobacter_oleivorans_DR1 1 1

Acinetobacter_calcoaceticus_PHEA-2 1 1

Acinetobacter_baumannii_ATCC_17978 1 1

Acinetobacter_sp._ADP1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome Number Proteins

Lotus_japonicus__(Early_assembly) 1 1

NCBI_plasmid_sequences_(Plasmids) 9 9

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3 3

TargetDB__(Targets) 3 3

STRING_v9.0.5_(STRING) 189 189

Uniprot_2018_03_genome 3074 3073

NCBI_2017_08_genome 20423 20422

Protein_Data_Bank_(all_PDB_sequenc) 1 1

PDB_chains_(SCOP_1.75)_(PDB) 1 1

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Domain combinations for YidB-like superfamily in groups of genomes