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Domain combinations for Pseudo ankyrin repeat-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Pseudo ankyrin repeat-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   3 3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2 2
Papio_anubis_76   (Olive baboon)   1 1
Macaca_mulatta_76_1   (Rhesus monkey)   3 3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_76_3   (Small-eared galago)   2 2
Microcebus_murinus_76_1   (Gray mouse lemur)   1 1
Rattus_norvegicus_76_5.0   (Norway rat)   2 2
Mus_musculus_76_38   (House mouse)   2 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_76_2   (Rabbit)   1 1
Ochotona_princeps_76   (American pika)   2 2
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Bos_taurus_76_3.1   (Cattle)   2 2
Ovis_aries_76_3.1   (Sheep)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_76_1   (Giant panda)   2 2
Canis_familiaris_76_3.1   (Dog)   4 4
Felis_catus_76_6.2   (Domestic cat)   2 2
Equus_caballus_76_2   (Horse)   2 2
Myotis_lucifugus_76_2.0   (Little brown bat)   2 2
Procavia_capensis_76_1   (Cape rock hyrax)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   1 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 1 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1 1
Latimeria_chalumnae_76_1   (Coelacanth)   1 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_76_4   (Torafugu)   2 2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1 1
Oryzias_latipes_76_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1 1
Poecilia_formosa_76   (Amazon molly)   1 1
Danio_rerio_76_9   (Zebrafish)   1 1
Oikopleura_dioica 1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 6 6
Crassostrea_gigas_22   (Pacific oyster)   2 2
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 1 1
Capitella_sp._I_ 1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 2
Acyrthosiphon_pisum_   (Pea aphid)   22 17
Daphnia_pulex_   (Common water flea)   1 1
Pristionchus_pacificus_ 1 1
Schistosoma_mansoni_ 1 1
Acropora_digitifera_v1.0 1 1
Hydra_vulgaris 20 19
Amphimedon_queenslandica 5 5
Proterospongia_sp._ATCC_50818_ 2 2
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 1 1
Sphaerobolus_stellatus_v1.0 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 1
Pisolithus_microcarpus_441_v1.0 1 1
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 3 3
Fomitiporia_mediterranea_v1.0 1 1
Postia_placenta_ 1 1
Wolfiporia_cocos_MD-104_SS10__v1.0 2 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 2 1
Dichomitus_squalens 2 1
Trametes_versicolor_v1.0 2 1
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 2 2
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 4 4
Nectria_haematococca_mpVI_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4 4
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 2 2
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 2 2
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 4 3
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 3 2
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 3 3
Uncinocarpus_reesii_1704_ 2 2
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 4 4
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 2 2
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Catenaria_anguillulae_PL171_v1.0 138 121
Allomyces_macrogynus_ATCC_38327_ 7 6
Dictyostelium_discoideum 5 5
Dictyostelium_purpureum_ 4 4
Eucalyptus_grandis_v201   (Rose gum)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 2 2
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   2 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   2 2
Medicago_truncatula_   (Barrel medic)   3 3
Phaseolus_vulgaris_v186   (French bean)   1 1
Cucumis_sativus_v122   (Cucumber)   2 2
Malus_domestica_v196   (Apple)   6 6
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   1 1
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Vitis_vinifera_   (Wine grape)   4 4
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_tuberosum_   (Potato)   1 1
Oryza_barthii_22   (African wild rice)   2 2
Oryza_glaberrima   (African rice)   1 1
Oryza_nivara_22 2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Oryza_sativa_v193   (Rice)   1 1
Panicum_virgatum_v202   (Switchgrass)   3 3
Zea_mays_subsp._mays_   (Maize)   4 4
Zea_mays_v181   (Maize)   4 4
Amborella_trichopoda_22 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 3 2
Asterochloris_sp._Cgr/DA1pho_v1.0 19 15
Volvox_carteri_f._nagariensis_ 15 13
Volvox_carteri_v199 15 13
Chlamydomonas_reinhardtii_4.0 19 19
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 12 11
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 16 14
Micromonas_sp._RCC299_ 6 5
Micromonas_pusilla_CCMP1545_v3.0 28 27
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 2 2
Giardia_lamblia_2.3 3 3
Ectocarpus_siliculosus 18 17
Aureococcus_anophagefferens_ 1 1
Pythium_iwayamai_DAOM_BR242034_22 34 32
Pythium_arrhenomanes_ATCC_12531_22 11 10
Pythium_ultimum_v1.7-2 29 28
Pythium_aphanidermatum_DAOM_BR444_22 5 5
Pythium_irregulare_DAOM_BR486_22 25 24
Pythium_vexans_DAOM_BR484_22 10 9
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 5
Phytophthora_sojae_1.1 17 17
Phytophthora_infestans_T30-4_ 9 9
Phytophthora_capsici_ 18 16
Hyaloperonospora_arabidopsidis_22 5 5
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 2 2
Naegleria_gruberi_ 5 5
Trichomonas_vaginalis_ 230 230
Emiliania_huxleyi_CCMP1516_ 10 7
'Nostoc_azollae'_0708 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Babela_massiliensis 1 1
Rickettsia_bellii_OSU_85-389 3 3
Rickettsia_canadensis_str._McKiel 1 1
Rickettsia_typhi_str._Wilmington 1 1
Rickettsia_philipii_str._364D 1 1
Rickettsia_felis_URRWXCal2 1 1
Rickettsia_rhipicephali_str._3-7-female6-CWPP 1 1
Rickettsia_akari_str._Hartford 1 1
Rickettsia_rickettsii_str._'Sheila_Smith' 2 1
Legionella_longbeachae_NSW150 3 3
Legionella_pneumophila_str._Corby 4 3
Pseudomonas_aeruginosa_UCBPP-PA14 1 1

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Strains
Genome     Number   Proteins
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 2 2
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 2 2
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 2 2
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_AWRI1631 1 1
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3 3
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Orientia_tsutsugamushi_str._Ikeda 1 1
Rickettsia_typhi_str._B9991CWPP 1 1
Rickettsia_typhi_str._TH1527 1 1
Rickettsia_prowazekii_str._GvV257 1 1
Rickettsia_rickettsii_str._Arizona 1 1
Rickettsia_rickettsii_str._Brazil 1 1
Rickettsia_rickettsii_str._Hauke 1 1
Rickettsia_rickettsii_str._Colombia 2 1
Rickettsia_rickettsii__str._Hlp#2 2 1
Rickettsia_rickettsii_str._Hino 1 1
Rickettsia_rickettsii_str._Iowa 1 1
Legionella_pneumophila_str._Paris 2 2
Legionella_pneumophila_str._Lens 2 2
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 2 2
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 4 3
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   2 2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2 2
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2 2
Otolemur_garnettii_69_3   (Small-eared galago)   2 2
Microcebus_murinus_69_1   (Gray mouse lemur)   1 1
Rattus_norvegicus_69_3.4   (Norway rat)   2 2
Mus_musculus_69_38   (House mouse)   2 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_69_2   (Rabbit)   1 1
Ochotona_princeps_69   (American pika)   2 2
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Bos_taurus_69_3.1   (Cattle)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_69_1   (Giant panda)   2 2
Canis_familiaris_69_3.1   (Dog)   2 2
Felis_catus_69   (Domestic cat)   1 1
Equus_caballus_69_2   (Horse)   2 2
Myotis_lucifugus_69_2.0   (Little brown bat)   2 2
Procavia_capensis_69_1   (Cape rock hyrax)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1 1
Latimeria_chalumnae_69_1   (Coelacanth)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   1 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1 1
Oryzias_latipes_69_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1 1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3 3
Homo_sapiens__(NCBI_version)   (Human)   3 3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   6 6
TargetDB__(Targets) 7 7
UniProt__viral_sequences_(Viral) 22 21
Protein_Data_Bank_(all_PDB_sequenc) 30 30
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 5 5
NCBI_viral_sequences_(Viral) 152 138
PDB_chains_(SCOP_1.75)_(PDB) 1 1
STRING_v9.0.5_(STRING) 391 386
Protozoadb_2010_08_(Protozoadb) 462 462
Uniprot_2018_03_genome 3691 3479
NCBI_2017_08_genome 5481 5299

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