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Domain combinations for ICP-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a ICP-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 14 7
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 2 2
Bigelowiella_natans_CCMP2755_22 1 1
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Perkinsus_marinus_ATCC_50983_ 2 2
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 3 3
Anabaena_sp._90 1 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 2 2
Thermobifida_fusca_YX 1 1
Streptosporangium_roseum_DSM_43021 1 1
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Mycobacterium_intracellulare_ATCC_13950 1 1
Mycobacterium_avium_104 1 1
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_marinum_M 1 1
Dehalococcoides_ethenogenes_195 1 1
Dehalococcoides_sp._BAV1 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Deinococcus_gobiensis_I-0 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Clostridium_clariflavum_DSM_19732 2 1
Clostridium_cellulolyticum_H10 2 1
Pelotomaculum_thermopropionicum_SI 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Clostridium_sp._BNL1100 4 2
Clostridium_beijerinckii_NCIMB_8052 1 1
Clostridium_cellulovorans_743B 6 3
Clostridium_acetobutylicum_ATCC_824 1 1
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_infantarius_subsp._infantarius_CJ18 1 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Spirosoma_linguale_DSM_74 1 1
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_fragilis_YCH46 1 1
Solitalea_canadensis_DSM_3403 1 1
Cellulophaga_algicola_DSM_14237 1 1
Treponema_azotonutricium_ZAS-9 1 1
Mesotoga_prima_MesG1.Ag.4.2 5 3
Elusimicrobium_minutum_Pei191 2 2
Candidatus_Nitrospira_defluvii 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Geobacter_uraniireducens_Rf4 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_fulvus_HW-1 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 1 1
Sphingobium_japonicum_UT26S 1 1
Sphingomonas_wittichii_RW1 1 1
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Mesorhizobium_opportunistum_WSM2075 2 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Methylocella_silvestris_BL2 1 1
Methylocystis_sp._SC2 1 1
Ferrimonas_balearica_DSM_9799 1 1
Xanthomonas_albilineans_GPE_PC73 1 1
Coxiella_burnetii_Dugway_5J108-111 1 1
Legionella_longbeachae_NSW150 1 1
Legionella_pneumophila_str._Corby 1 1
Klebsiella_variicola_At-22 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 1 1
Methanocella_arvoryzae_MRE50 4 3
Methanocella_conradii_HZ254 3 3
Methanocella_paludicola_SANAE 5 5
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_concilii_GP6 3 3
Methanococcoides_burtonii_DSM_6242 3 2
Methanosarcina_acetivorans_C2A 6 6
Methanosarcina_mazei_Go1 5 5
Methanosarcina_barkeri_str._Fusaro 3 3
Methanohalophilus_mahii_DSM_5219 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 2 2
Methanospirillum_hungatei_JF-1 5 5
Methanocorpusculum_labreanum_Z 2 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 2 2
Methanoculleus_marisnigri_JR1 1 1
Methanococcus_maripaludis_C5 1 1
Methanococcus_voltae_A3 8 4
Methanococcus_vannielii_SB 1 1

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Strains
Genome     Number   Proteins
Trypanosoma_brucei_Lister_427_v4.1 1 1
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Anabaena_cylindrica_PCC_7122 1 1
Gordonibacter_pamelaeae_7-10-1-b 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Actinoplanes_friuliensis_DSM_7358 1 1
Rhodococcus_pyridinivorans_SB3094 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Mycobacterium_sp._MOTT36Y 1 1
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_yongonense_05-1390 1 1
Mycobacterium_intracellulare_MOTT-64 1 1
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 1 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1 1
Mycobacterium_kansasii_ATCC_12478 2 2
Dehalococcoides_mccartyi_GY50 1 1
Dehalococcoides_mccartyi_DCMB5 1 1
Dehalococcoides_mccartyi_BTF08 1 1
Dehalococcoides_sp._GT 1 1
Dehalococcoides_sp._VS 1 1
Dehalococcoides_sp._CBDB1 1 1
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_lutetiensis_033 1 1
Bacillus_thuringiensis_YBT-1518 2 2
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Myxococcus_stipitatus_DSM_14675 1 1
Burkholderia_sp._YI23 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 1 1
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1 1
Mesorhizobium_australicum_WSM2073 1 1
Hyphomicrobium_nitrativorans_NL23 1 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Coxiella_burnetii_RSA_331 1 1
Coxiella_burnetii_RSA_493 1 1
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Dickeya_dadantii_Ech586 1 1
Dickeya_dadantii_3937 1 1
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 2 2
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 2 2
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 3 3
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Methanococcus_maripaludis_X1 1 1
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1
Methanococcus_maripaludis_S2 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 4 4
NCBI_2017_08_genome 7186 7141
TargetDB__(Targets) 10 10
Protein_Data_Bank_(all_PDB_sequenc) 20 20
PDB_chains_(SCOP_1.75)_(PDB) 5 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 28 28
Protozoadb_2010_08_(Protozoadb) 29 29
STRING_v9.0.5_(STRING) 124 120
Uniprot_2018_03_genome 2845 2745

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.