Domain combinations for At5g01610-like superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a At5g01610-like domain in that genome.

Complete genomes

Genome		Number	Proteins
Selaginella_moellendorffii_		14	14
Pinus_taeda	(Loblolly pine)	31	30
Picea_abies	(Norway spruce)	37	35
Eucalyptus_grandis_v201	(Rose gum)	37	37
Theobroma_cacao_B97-61/B2_v1	(Cacao)	21	20
Gossypium_raimondii_v221		54	54
Citrus_clementina_v165		25	25
Citrus_sinensis_v154	(Sweet orange)	26	26
Thellungiella_halophila_v173		27	27
Brassica_rapa_Chiifu-401_1.2	(Field mustard)	41	41
Capsella_rubella_v183		22	22
Arabidopsis_lyrata_	(Lyrate rockcress)	22	22
Arabidopsis_thaliana_10	(Thale cress)	24	24
Carica_papaya_	(Papaya)	17	17
Medicago_truncatula_	(Barrel medic)	29	29
Phaseolus_vulgaris_v186	(French bean)	23	23
Glycine_max_v109	(Soybean)	41	41
Cucumis_sativus_v122	(Cucumber)	23	23
Fragaria_vesca_	(Wild strawberry)	23	23
Malus_domestica_v196	(Apple)	53	49
Prunus_persica_v139	(Peach)	20	20
Linum_usitatissimum_v200	(Flax)	46	46
Manihot_esculenta_v147	(Cassava)	29	29
Populus_trichocarpa_v156	(Black cottonwood)	34	34
Vitis_vinifera_	(Wine grape)	19	19
Mimulus_guttatus_v140	(Spotted monkey flower)	25	25
Solanum_lycopersicum_v.2.3	(Tomato)	26	26
Solanum_tuberosum_	(Potato)	37	37
Actinidia_chinensis_Hongyang_		38	38
Aquilegia_coerulea_v195		18	18
Triticum_urartu_22		38	37
Triticum_aestivum_22	(Bread wheat)	107	107
Aegilops_tauschii_22		35	34
Brachypodium_distachyon_	(Stiff brome)	37	37
Oryza_barthii_22	(African wild rice)	43	39
Oryza_meridionalis_22		40	38
Oryza_glumaepatula_22		49	38
Oryza_glaberrima	(African rice)	30	30
Oryza_punctata_22		43	41
Oryza_nivara_22		46	44
Oryza_brachyantha_22	(Malo sina)	38	38
Oryza_sativa_ssp._japonica_5.0	(Japanese rice)	42	42
Oryza_sativa_v193	(Rice)	42	42
Phyllostachys_heterocyclavar._pubescens	(Kikko-chiku)	26	26
Panicum_virgatum_v202	(Switchgrass)	92	92
Setaria_italica_v164	(Foxtail millet)	52	52
Zea_mays_subsp._mays_	(Maize)	50	50
Zea_mays_v181	(Maize)	51	51
Sorghum_bicolor_	(Sorghum)	50	50
Musa_balbisiana	(Balbis banana)	42	42
Musa_acuminata_22	(Wild Malaysian banana)	30	30
Amborella_trichopoda_22		15	15
Physcomitrella_patens		8	8

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Strains

Genome		Number	Proteins
Theobroma_cacao_Matina_1-6_v0.9	(Cacao)	21	21
Hordeum_vulgare_22	(Domesticated barley)	39	39
Oryza_sativa_ssp._Indica_(Subspecies)	(Long-grained rice)	43	43
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749		1	1

Longest transcript per gene

Genome		Number	Proteins
Arabidopsis_thaliana_10	(Thale cress)	22	22

Others

Genome		Number	Proteins
Pinus_sylvestris__(Incomplete)	(Scots pine)	6	6
Picea_sitchensis__(Incomplete)	(Sitka spruce)	15	15
Lotus_japonicus__(Early_assembly)		23	23
Malus_x_domestica_(Duplicate)	(Apple)	53	49
Ricinus_communis__(Early_assembly)	(Castor bean)	21	21
Nicotiana_benthamiana_0.4.4_(Early_draft)		55	51
Solanum_pimpinellifolium_A-1.0_(Early_draft)	(Currant tomato)	26	26
Solanum_lycopersicum_v2.3_(Early_assembly)	(Tomato)	26	26
Phoenix_dactylifera__(Early_draft)	(Date palm)	10	10
Protein_Data_Bank_(all_PDB_sequenc)		1	1
TargetDB__(Targets)		27	27
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		3	3
STRING_v9.0.5_(STRING)		263	263
NCBI_2017_08_genome		2512	2506
Uniprot_2018_03_genome		3279	3233
PDB_chains_(SCOP_1.75)_(PDB)		1	1

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