SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for CAC2185-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CAC2185-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Roseburia_intestinalis 1 1
Clostridium_cellulovorans_743B 1 1
Clostridium_acetobutylicum_ATCC_824 2 2
Lactobacillus_johnsonii_FI9785 1 1
Cyclobacterium_marinum_DSM_745 1 1
Sulfuricurvum_kujiense_DSM_16994 1 1
Aggregatibacter_aphrophilus_NJ8700 1 1
Haemophilus_parasuis_SH0165 1 1
Haemophilus_parainfluenzae_T3T1 1 1
Haemophilus_influenzae_PittEE 1 1
Actinobacillus_succinogenes_130Z 1 1
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1 1
Psychromonas_ingrahamii_37 1 1
Edwardsiella_ictaluri_93-146 1 1
Edwardsiella_tarda_EIB202 1 1

Strains
Genome     Number   Proteins
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Bifidobacterium_longum_subsp._longum_BBMN68 1 1
Coprococcus_catus_GD/7 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2 2
Clostridium_acetobutylicum_DSM_1731 2 2
Clostridium_acetobutylicum_EA_2018 2 2
Lactobacillus_reuteri_TD1 1 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1 1
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_pneumoniae_CGSP14 1 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_D39 1 1
Streptococcus_pneumoniae_TIGR4 1 1
Streptococcus_salivarius_JIM8777 1 1
Prevotella_dentalis_DSM_3688 1 1
Mannheimia_succiniciproducens_MBEL55E 1 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1 1
Haemophilus_parasuis_ZJ0906 1 1
Haemophilus_influenzae_KR494 1 1
Haemophilus_influenzae_F3047 1 1
Haemophilus_influenzae_F3031 1 1
Haemophilus_influenzae_10810 1 1
Haemophilus_influenzae_PittGG 1 1
Haemophilus_influenzae_86-028NP 1 1
Haemophilus_influenzae_R2866 1 1
Haemophilus_influenzae_R2846 1 1
Haemophilus_influenzae_Rd_KW20 1 1
Actinobacillus_suis_H91-0380 1 1
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 1 1
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 1 1
Edwardsiella_tarda_C07-087 1 1
Edwardsiella_tarda_FL6-60 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 3 3
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6 6
TargetDB__(Targets) 7 7
STRING_v9.0.5_(STRING) 24 24
Uniprot_2018_03_genome 455 455
NCBI_2017_08_genome 2699 2699

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