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Domain combinations for RGC domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RGC domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   8 8
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3 3
Gorilla_gorilla_76_3.1   (Western gorilla)   3 3
Pongo_abelii_76_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3 3
Papio_anubis_76   (Olive baboon)   3 3
Macaca_mulatta_76_1   (Rhesus monkey)   5 5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   5 5
Otolemur_garnettii_76_3   (Small-eared galago)   3 3
Microcebus_murinus_76_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_76_5.0   (Norway rat)   3 3
Mus_musculus_76_38   (House mouse)   3 3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3 3
Cavia_porcellus_76_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_76_2   (Rabbit)   5 5
Ochotona_princeps_76   (American pika)   3 3
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   3 3
Bos_taurus_76_3.1   (Cattle)   3 3
Ovis_aries_76_3.1   (Sheep)   3 3
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   3 3
Canis_familiaris_76_3.1   (Dog)   3 3
Felis_catus_76_6.2   (Domestic cat)   3 3
Equus_caballus_76_2   (Horse)   3 3
Myotis_lucifugus_76_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_76_1   (Large flying fox)   3 3
Sorex_araneus_76_1   (European shrew)   3 3
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   3 3
Loxodonta_africana_76_3   (African savanna elephant)   4 4
Echinops_telfairi_76   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3 3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4 4
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 3 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   2 2
Gallus_gallus_76_4   (Chicken)   1 1
Anas_platyrhynchos_76_1.0   (Mallard)   3 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   2 2
Xenopus_laevis_   (African clawed frog)   5 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_76_1   (Coelacanth)   4 4
Lepisosteus_oculatus_76   (Spotted gar)   3 3
Gadus_morhua_76_1   (Atlantic cod)   3 3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_76_4   (Torafugu)   7 7
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6 6
Oryzias_latipes_76_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3 3
Poecilia_formosa_76   (Amazon molly)   2 2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5 5
Astyanax_mexicanus_76   (Mexican tetra)   3 3
Danio_rerio_76_9   (Zebrafish)   3 3
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   1 1
Helobdella_robusta_ 1 1
Capitella_sp._I_ 1 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Daphnia_pulex_   (Common water flea)   1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 1 1
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 2 2
Amphimedon_queenslandica 2 2
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 3 3
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 3 3
Mortierella_verticillata_NRRL_6337_ 2 2
Phycomyces_blakesleeanus_ 5 5
Rhizopus_oryzae_RA_99-880_ 7 7
Mucor_circinelloides_ 5 5
Rhizomucor_miehei_CAU432_ 4 4
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 2 2
Ustilago_maydis_ 2 2
Mixia_osmundae_IAM_14324_v1.0 2 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 2
Melampsora_laricis-populina_ 2 2
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 2 2
Wallemia_sebi_v1.0 2 2
Sphaerobolus_stellatus_v1.0 3 3
Piloderma_croceum_F_1598_v1.0 2 2
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 2 2
Hydnomerulius_pinastri_v2.0 3 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 2
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 2 2
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 2 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 2 2
Hebeloma_cylindrosporum_h7_v2.0 2 2
Laccaria_bicolor_S238N-H82_ 2 2
Agaricus_bisporus_var._bisporus_ 2 2
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 2 2
Punctularia_strigosozonata_v1.0 2 2
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 2 2
Tulasnella_calospora_AL13/4D_v1.0 2 2
Postia_placenta_ 3 3
Wolfiporia_cocos_MD-104_SS10__v1.0 2 2
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 3
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 2 2
Tremella_mesenterica_   (Witches' butter)   2 2
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 2 2
Podospora_anserina_ 2 2
Sporotrichum_thermophile_ATCC_42464_ 2 2
Thielavia_terrestris_NRRL_8126_ 2 2
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 2 2
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 2 2
Nectria_haematococca_mpVI_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 2 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 2 2
Didymella_exigua_CBS_183.55_v1.0 2 2
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 2 2
Pyrenophora_teres_f._teres_22 2 2
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 2 2
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 2 2
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2 2
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 2 2
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 2 2
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 2 2
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 2 2
Aspergillus_nidulans_FGSC_A4_ 3 3
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 2 2
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 2 2
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 2 2
Aspergillus_clavatus_NRRL_1_ 2 2
Penicillium_marneffei_ATCC_18224_ 2 2
Tuber_melanosporum_Mel28_22 2 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 1 1
Yarrowia_lipolytica_CLIB122 2 2
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Saccharomyces_mikatae_MIT 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 2 2
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 2 2
Allomyces_macrogynus_ATCC_38327_ 4 4
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 4 4
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 2 2
Entamoeba_histolytica_1 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Naegleria_gruberi_ 4 4

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 2 2
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 2 2
Aspergillus_fumigatus_A1163_ 2 2
Candida_albicans_WO-1_ 1 1
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   3 3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3 3
Gorilla_gorilla_69_3.1   (Western gorilla)   3 3
Pongo_abelii_69_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 3
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3 3
Otolemur_garnettii_69_3   (Small-eared galago)   3 3
Microcebus_murinus_69_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_69_3.4   (Norway rat)   3 3
Mus_musculus_69_38   (House mouse)   3 3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_69_2   (Rabbit)   3 3
Ochotona_princeps_69   (American pika)   3 3
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   3 3
Bos_taurus_69_3.1   (Cattle)   3 3
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 3
Canis_familiaris_69_3.1   (Dog)   3 3
Felis_catus_69   (Domestic cat)   3 3
Equus_caballus_69_2   (Horse)   3 3
Myotis_lucifugus_69_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_69_1   (Large flying fox)   3 3
Sorex_araneus_69_1   (European shrew)   3 3
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   3 3
Loxodonta_africana_69_3   (African savanna elephant)   3 3
Echinops_telfairi_69   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3 3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3 3
Ornithorhynchus_anatinus_69_5   (Platypus)   2 2
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   2 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   2 2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   3 3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_69_4   (Torafugu)   3 3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3 3
Oryzias_latipes_69_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3 3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3 3
Danio_rerio_69_9   (Zebrafish)   3 3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   8 8
Homo_sapiens__(NCBI_version)   (Human)   3 3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 3
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
TargetDB__(Targets) 4 4
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 11 11
STRING_v9.0.5_(STRING) 147 147
NCBI_2017_08_genome 1656 1654
Uniprot_2018_03_genome 2180 2172
Protein_Data_Bank_(all_PDB_sequenc) 6 6
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protozoadb_2010_08_(Protozoadb) 4 4

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