SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Dhaf3308-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Dhaf3308-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Trichodesmium_erythraeum_IMS101 1 1
Cyanothece_sp._PCC_8802 1 1
Rivularia_sp._PCC_7116 1 1
Cryptobacterium_curtum_DSM_15641 1 1
Eggerthella_lenta_DSM_2243 1 1
Slackia_heliotrinireducens_DSM_20476 1 1
Atopobium_parvulum_DSM_20469 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_scabiei_87.22 1 1
Actinosynnema_mirum_DSM_43827 1 1
Saccharopolyspora_erythraea_NRRL_2338 1 1
Kribbella_flavida_DSM_17836 1 1
Propionibacterium_propionicum_F0230a 2 2
Tsukamurella_paurometabola_DSM_20162 1 1
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_opacus_B4 1 1
Actinomyces_sp._F0330 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1 1
Symbiobacterium_thermophilum_IAM_14863 2 2
Ethanoligenens_harbinense_YUAN-3 2 2
Oscillibacter_valericigenes_Sjm18-20 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfitobacterium_hafniense_Y51 2 2
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Desulfotomaculum_ruminis_DSM_2154 1 1
Acetobacterium_woodii_DSM_1030 3 3
Clostridium_difficile_630 1 1
Clostridium_saccharolyticum_WM1 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 3 3
Alkaliphilus_oremlandii_OhILAs 2 2
Clostridium_ljungdahlii_DSM_13528 3 3
Clostridium_botulinum_A_str._ATCC_3502 1 1
Thermodesulfobium_narugense_DSM_14796 1 1
Moorella_thermoacetica_ATCC_39073 4 4
Acetohalobium_arabaticum_DSM_5501 1 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1 1
Anaerobaculum_mobile_DSM_13181 2 2
Spirochaeta_smaragdinae_DSM_11293 4 4
Sphaerochaeta_pleomorpha_str._Grapes 1 1
Treponema_azotonutricium_ZAS-9 1 1
Treponema_primitia_ZAS-2 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Thermodesulfobacterium_sp._OPB45 1 1
Calditerrivibrio_nitroreducens_DSM_19672 1 1
Deferribacter_desulfuricans_SSM1 1 1
Marinitoga_piezophila_KA3 1 1
Petrotoga_mobilis_SJ95 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Thermosipho_melanesiensis_BI429 1 1
Thermosipho_africanus_TCF52B 1 1
Caldisericum_exile_AZM16c01 2 2
Sulfurospirillum_barnesii_SES-3 1 1
Campylobacter_curvus_525.92 1 1
Wolinella_succinogenes_DSM_1740 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Syntrophus_aciditrophicus_SB 3 3
Desulfomonile_tiedjei_DSM_6799 2 2
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfotalea_psychrophila_LSv54 2 2
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfobacterium_autotrophicum_HRM2 3 3
Desulfococcus_oleovorans_Hxd3 2 2
Desulfohalobium_retbaense_DSM_5692 2 2
Desulfovibrio_piezophilus 1 1
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Hippea_maritima_DSM_10411 2 2
Pelobacter_propionicus_DSM_2379 4 4
Pelobacter_carbinolicus_DSM_2380 4 4
Thauera_sp._MZ1T 1 1
Azoarcus_sp._KH32C 1 1
Alicycliphilus_denitrificans_K601 1 1
Magnetococcus_marinus_MC-1 1 1
Paracoccus_denitrificans_PD1222 1 1
Rhodospirillum_photometricum_DSM_122 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Azospirillum_lipoferum_4B 1 1
Azospirillum_sp._B510 1 1
Azospirillum_brasilense_Sp245 2 2
Teredinibacter_turnerae_T7901 1 1
Methylomonas_methanica_MC09 1 1
Methylococcus_capsulatus_str._Bath 1 1
Allochromatium_vinosum_DSM_180 1 1
Serratia_sp._ATCC_39006 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_stutzeri_A1501 1 1
Acidilobus_saccharovorans_345-15 1 1
Pyrolobus_fumarii_1A 1 1
Hyperthermus_butylicus_DSM_5456 1 1
Ignicoccus_hospitalis_KIN4/I 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 2 2
Sulfolobus_tokodaii_str._7 2 2
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Thermofilum_pendens_Hrk_5 1 1
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 2 2
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
Thermoproteus_tenax_Kra_1 1 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_concilii_GP6 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanohalophilus_mahii_DSM_5219 1 1
Methanoregula_boonei_6A8 2 2
Methanospirillum_hungatei_JF-1 3 3
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 2 2
Methanoculleus_marisnigri_JR1 1 1
Methanopyrus_kandleri_AV19 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 2 2
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 2 2
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 2 2
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 2 2
Methanocaldococcus_fervens_AG86 3 3
Methanocaldococcus_vulcanius_M7 3 3
methanocaldococcus_infernus_ME 2 2
Methanocaldococcus_jannaschii_DSM_2661 1 1
Methanothermococcus_okinawensis_IH1 1 1
Methanococcus_aeolicus_Nankai-3 1 1
Methanococcus_maripaludis_C5 1 1
Methanococcus_voltae_A3 2 2
Methanococcus_vannielii_SB 1 1
Methanothermus_fervidus_DSM_2088 2 2
Methanothermobacter_marburgensis_str._Marburg 2 2
Methanothermobacter_thermautotrophicus_str._Delta_H 2 2
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1 1
Aciduliprofundum_sp._MAR08-339 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Gordonibacter_pamelaeae_7-10-1-b 1 1
Adlercreutzia_equolifaciens_DSM_19450 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Actinomyces_odontolyticus_ATCC_17982 1 1
Actinomyces_viscosus_C505 1 1
Clostridium_acidurici_9a 3 3
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_hafniense_DCB-2 2 2
Desulfotomaculum_gibsoniae_DSM_7213 5 5
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Clostridium_autoethanogenum_DSM_10061 2 2
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermacetogenium_phaeum_DSM_12270 4 4
Halobacteroides_halobius_DSM_5150 1 1
Desulfobacula_toluolica_Tol2 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Desulfovibrio_desulfuricans_ND132 3 3
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2 2
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Natronobacterium_gregoryi_SP2 1 1
Methanococcus_maripaludis_X1 2 2
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1
Methanococcus_maripaludis_S2 2 2
Methanobacterium_sp._SWAN-1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 6 6
PDB_chains_(SCOP_1.75)_(PDB) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 16 16
NCBI_viral_sequences_(Viral) 1 1
STRING_v9.0.5_(STRING) 134 134
Uniprot_2018_03_genome 1901 1900
NCBI_2017_08_genome 2992 2992
Protein_Data_Bank_(all_PDB_sequenc) 6 6
TargetDB__(Targets) 11 11

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]