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Domain combinations for YdfO-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YdfO-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Adineta_vaga 1 1
Aspergillus_zonatus_v1.0 1 1
Naegleria_gruberi_ 1 1
Mycobacterium_canettii_CIPT_140010059 1 1
Mycobacterium_africanum_GM041182 1 1
Mycobacterium_tuberculosis_KZN_1435 1 1
Mycobacterium_tuberculosis 1 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Carnobacterium_sp._17-4 1 1
Carnobacterium_sp._WN1359 1 1
Lactobacillus_sakei_subsp._sakei_23K 1 1
Lactobacillus_plantarum_JDM1 1 1
Lactobacillus_brevis_ATCC_367 1 1
Lactococcus_garvieae_ATCC_49156 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_uberis_0140J 1 1
Streptococcus_parauberis_KCTC_11537 1 1
Streptococcus_suis_P1/7 1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1 1
Listeria_innocua_Clip11262 1 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 1 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1 1
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Solitalea_canadensis_DSM_3403 1 1
Fluviicola_taffensis_DSM_16823 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_johnsoniae_UW101 1 1
Pirellula_staleyi_DSM_6068 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Burkholderia_phytofirmans_PsJN 2 1
Burkholderia_xenovorans_LB400 2 1
Sideroxydans_lithotrophicus_ES-1 1 1
Gallionella_capsiferriformans_ES-2 2 1
Asticcacaulis_excentricus_CB_48 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Azospirillum_brasilense_Sp245 2 1
Azorhizobium_caulinodans_ORS_571 1 1
Agrobacterium_vitis_S4 1 1
Methylocella_silvestris_BL2 1 1
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 1 1
Legionella_longbeachae_NSW150 1 1
Escherichia_blattae_DSM_4481 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 3 3
Shigella_sonnei_Ss046 2 2
Shigella_boydii_CDC_3083-94 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 2 2

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Strains
Genome     Number   Proteins
Mycobacterium_canettii_CIPT_140070017 1 1
Mycobacterium_canettii_CIPT_140060008 1 1
Mycobacterium_canettii_CIPT_140070008 1 1
Mycobacterium_canettii_CIPT_140070010 1 1
Mycobacterium_tuberculosis_EAI5/NITR206 1 1
Mycobacterium_tuberculosis_EAI5 1 1
Mycobacterium_tuberculosis_CAS/NITR204 1 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1 1
Mycobacterium_tuberculosis_UT205 1 1
Mycobacterium_tuberculosis_RGTB423 1 1
Mycobacterium_tuberculosis_RGTB327 1 1
Mycobacterium_tuberculosis_CTRI-2 1 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1 1
Mycobacterium_tuberculosis_KZN_605 1 1
Mycobacterium_tuberculosis_KZN_4207 1 1
Mycobacterium_tuberculosis_CCDC5180 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_H37Ra 1 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1 1
Mycobacterium_tuberculosis_str._Haarlem 1 1
Mycobacterium_tuberculosis_F11 1 1
Mycobacterium_tuberculosis_H37Rv 1 1
Mycobacterium_tuberculosis_CDC1551 1 1
Mycobacterium_bovis_AF2122/97 1 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1 1
Mycobacterium_bovis_BCG_str._Mexico 1 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_plantarum_WCFS1 1 1
Lactobacillus_brevis_KB290 1 1
Lactococcus_garvieae_Lg2 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1 1
Lactococcus_lactis_subsp._lactis_IO-1 1 1
Lactococcus_lactis_subsp._lactis_CV56 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Lactococcus_lactis_subsp._cremoris_KW2 1 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1 1
Lactococcus_lactis_subsp._cremoris_A76 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_suis_T15 1 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_SC070731 1 1
Streptococcus_suis_S735 1 1
Streptococcus_suis_ST3 1 1
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 1 1
Streptococcus_suis_D12 1 1
Streptococcus_suis_ST1 1 1
Streptococcus_suis_A7 1 1
Streptococcus_suis_JS14 1 1
Streptococcus_suis_BM407 1 1
Streptococcus_suis_SC84 1 1
Streptococcus_suis_GZ1 1 1
Streptococcus_suis_98HAH33 1 1
Streptococcus_suis_05ZYH33 1 1
Listeria_monocytogenes_EGD_sequence 1 1
Listeria_monocytogenes_N53-1 1 1
Listeria_monocytogenes_La111 1 1
Listeria_monocytogenes_serotype_4b_str._LL195 1 1
Listeria_monocytogenes_07PF0776 1 1
Listeria_monocytogenes_M7 1 1
Listeria_monocytogenes_J1-220 1 1
Listeria_monocytogenes_J1816 1 1
Listeria_monocytogenes_SLCC2376 1 1
Listeria_monocytogenes_SLCC5850 1 1
Listeria_monocytogenes_ATCC_19117 1 1
Listeria_monocytogenes_L312 1 1
Listeria_monocytogenes_SLCC2479 1 1
Listeria_monocytogenes_SLCC7179 1 1
Listeria_monocytogenes_SLCC2540 1 1
Listeria_monocytogenes_SLCC2378 1 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 1 1
Listeria_monocytogenes_08-5578 1 1
Listeria_monocytogenes_08-5923 1 1
Listeria_monocytogenes_L99 1 1
Listeria_monocytogenes_HCC23 1 1
Listeria_monocytogenes_10403S 1 1
Listeria_monocytogenes_J0161 1 1
Listeria_monocytogenes_Finland_1998 1 1
Listeria_monocytogenes_FSL_R2-561 1 1
Listeria_monocytogenes_serotype_4b_str._F2365 1 1
Listeria_monocytogenes_EGD-e 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1 1
Staphylococcus_pasteuri_SP1 1 1
Staphylococcus_warneri_SG1 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 1 1
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_04-02981 1 1
Staphylococcus_aureus_RF122 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_6850 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_CN1 1 1
Staphylococcus_aureus_subsp._aureus_SA40 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_VC40 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_LGA251 1 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1 1
Staphylococcus_aureus_subsp._aureus_JKD6159 1 1
Staphylococcus_aureus_subsp._aureus_ED133 1 1
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 1 1
Staphylococcus_aureus_subsp._aureus_TCH60 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_71193 1 1
Staphylococcus_aureus_subsp._aureus_S0385 1 1
Staphylococcus_aureus_subsp._aureus_str._Newman 1 1
Staphylococcus_aureus_subsp._aureus_Mu3 1 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1 1
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1 1
Staphylococcus_aureus_subsp._aureus_MW2 1 1
Staphylococcus_aureus_subsp._aureus_N315 1 1
Staphylococcus_aureus_subsp._aureus_Mu50 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Emticicia_oligotrophica_DSM_17448 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Hyphomicrobium_denitrificans_1NES1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Raoultella_ornithinolytica_B6 1 1
Shigella_sonnei_53G 2 2
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 2 2
Escherichia_coli_JJ1886 1 1
Escherichia_coli_LY180 2 2
Escherichia_coli_APEC_O78 3 3
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 2 2
Escherichia_coli_O104:H4_str._2009EL-2071 2 2
Escherichia_coli_O104:H4_str._2011C-3493 2 2
Escherichia_coli_P12b 2 2
Escherichia_coli_str._'clone_D_i2' 2 2
Escherichia_coli_str._'clone_D_i14' 2 2
Escherichia_coli_UM146 2 2
Escherichia_coli_042 3 3
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_UMNK88 1 1
Escherichia_coli_O83:H1_str._NRG_857C 2 2
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 2 2
Escherichia_coli_KO11FL 2 2
Escherichia_coli_LF82 2 2
Escherichia_coli_ED1a 1 1
Escherichia_coli_IAI39 2 2
Escherichia_coli_UMN026 3 3
Escherichia_coli_55989 3 3
Escherichia_coli_S88 2 2
Escherichia_coli_IAI1 2 2
Escherichia_coli_W 2 2
Escherichia_coli_W 2 2
Escherichia_coli_DH1 3 3
Escherichia_coli_DH1 3 3
Escherichia_coli_ATCC_8739 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 2 2
Escherichia_coli_O103:H2_str._12009 2 2
Escherichia_coli_UTI89 2 2
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 2 2
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 2 2
Escherichia_coli_CFT073 2 2
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Escherichia_coli_BW2952 4 4
Escherichia_coli_str._K-12_substr._MG1655 3 3
Escherichia_coli_str._K-12_substr._W3110 3 3
Escherichia_coli_str._K-12_substr._DH10B 4 4
Escherichia_coli_B_str._REL606 1 1
Enterobacter_cloacae_SCF1 1 1

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Others
Genome     Number   Proteins
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1 1
NCBI_plasmid_sequences_(Plasmids) 4 3
Protein_Data_Bank_(all_PDB_sequenc) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4 4
TargetDB__(Targets) 9 9
UniProt__viral_sequences_(Viral) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 1 1
STRING_v9.0.5_(STRING) 137 135
Uniprot_2018_03_genome 1447 1416
NCBI_2017_08_genome 39741 39709
NCBI_viral_sequences_(Viral) 3 3

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