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Domain combinations for BRK domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a BRK domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   34 26
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9 7
Gorilla_gorilla_76_3.1   (Western gorilla)   14 10
Pongo_abelii_76_2   (Sumatran orangutan)   8 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7 5
Papio_anubis_76   (Olive baboon)   9 7
Macaca_mulatta_76_1   (Rhesus monkey)   10 8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   16 12
Otolemur_garnettii_76_3   (Small-eared galago)   8 6
Microcebus_murinus_76_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_76_5.0   (Norway rat)   5 4
Mus_musculus_76_38   (House mouse)   19 15
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7 5
Cavia_porcellus_76_3   (Domestic guinea pig)   5 4
Oryctolagus_cuniculus_76_2   (Rabbit)   6 4
Ochotona_princeps_76   (American pika)   7 5
Tupaia_belangeri_76   (Northern tree shrew)   5 5
Sus_scrofa_76_10.2   (Pig)   5 4
Bos_taurus_76_3.1   (Cattle)   8 6
Ovis_aries_76_3.1   (Sheep)   7 5
Vicugna_pacos_76_1   (Alpaca)   5 4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   8 6
Canis_familiaris_76_3.1   (Dog)   10 8
Felis_catus_76_6.2   (Domestic cat)   7 6
Equus_caballus_76_2   (Horse)   13 11
Myotis_lucifugus_76_2.0   (Little brown bat)   7 5
Pteropus_vampyrus_76_1   (Large flying fox)   7 5
Sorex_araneus_76_1   (European shrew)   7 5
Erinaceus_europaeus_76   (Western European hedgehog)   7 5
Procavia_capensis_76_1   (Cape rock hyrax)   6 5
Loxodonta_africana_76_3   (African savanna elephant)   13 10
Echinops_telfairi_76   (Small Madagascar hedgehog)   6 4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   9 7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   7 5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11 9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   8 6
Ornithorhynchus_anatinus_76_5   (Platypus)   9 6
Saccoglossus_kowalevskii_v3.0 21 13
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   7 5
Gallus_gallus_76_4   (Chicken)   4 3
Anas_platyrhynchos_76_1.0   (Mallard)   7 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7 5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   5 4
Anolis_carolinensis_76_2.0   (Green anole)   7 5
Xenopus_laevis_   (African clawed frog)   11 7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   11 9
Latimeria_chalumnae_76_1   (Coelacanth)   9 7
Lepisosteus_oculatus_76   (Spotted gar)   11 7
Gadus_morhua_76_1   (Atlantic cod)   7 6
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   12 8
Takifugu_rubripes_76_4   (Torafugu)   31 23
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 6
Oryzias_latipes_76_1   (Japanese medaka)   7 6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8 6
Poecilia_formosa_76   (Amazon molly)   9 7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   10 8
Astyanax_mexicanus_76   (Mexican tetra)   9 7
Danio_rerio_76_9   (Zebrafish)   12 8
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7 7
Ciona_intestinalis_76   (Vase tunicate)   4 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5 5
Adineta_vaga 6 6
Octopus_bimaculoides_280 7 6
Crassostrea_gigas_22   (Pacific oyster)   3 2
Lottia_gigantea_   (Owl limpet)   1 1
Helobdella_robusta_ 4 3
Capitella_sp._I_ 3 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   3 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7 7
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 3 3
Drosophila_willistoni_1.3 3 3
Drosophila_pseudoobscura_2.13 3 3
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 4 4
Drosophila_yakuba_1.3 3 3
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   14 14
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 3 3
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 3 3
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 3
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4 4
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   3 3
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   5 5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 3 2
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 3 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 2
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 10 10
Caenorhabditis_remanei_ 8 8
Caenorhabditis_elegans_76_235   (Roundworm)   2 2
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 2 2
Echinococcus_multilocularis_ 20 20
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 3 3
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Hydra_vulgaris 2 2
Amphimedon_queenslandica 2 2
Monosiga_brevicollis_ 1 1
Cyanidioschyzon_merolae_strain_10D_22 5 3
Cyanidioschyzon_merolae 5 3
Porphyridium_purpureum_02_2012 10 6
Anaeromyxobacter_sp._Fw109-5 1 1
Pseudovibrio_sp._FO-BEG1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11 9
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2 2

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   8 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7 5
Gorilla_gorilla_69_3.1   (Western gorilla)   8 6
Pongo_abelii_69_2   (Sumatran orangutan)   8 6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 5
Macaca_mulatta_69_1   (Rhesus monkey)   8 6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8 6
Otolemur_garnettii_69_3   (Small-eared galago)   7 5
Microcebus_murinus_69_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_69_3.4   (Norway rat)   7 5
Mus_musculus_69_38   (House mouse)   7 5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8 6
Cavia_porcellus_69_3   (Domestic guinea pig)   5 4
Oryctolagus_cuniculus_69_2   (Rabbit)   4 3
Ochotona_princeps_69   (American pika)   7 5
Tupaia_belangeri_69   (Northern tree shrew)   5 5
Sus_scrofa_69_10.2   (Pig)   5 4
Bos_taurus_69_3.1   (Cattle)   8 6
Vicugna_pacos_69_1   (Alpaca)   5 4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   7 5
Canis_familiaris_69_3.1   (Dog)   7 5
Felis_catus_69   (Domestic cat)   6 5
Equus_caballus_69_2   (Horse)   8 6
Myotis_lucifugus_69_2.0   (Little brown bat)   7 5
Pteropus_vampyrus_69_1   (Large flying fox)   7 5
Sorex_araneus_69_1   (European shrew)   7 5
Erinaceus_europaeus_69   (Western European hedgehog)   7 5
Procavia_capensis_69_1   (Cape rock hyrax)   6 5
Loxodonta_africana_69_3   (African savanna elephant)   8 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   6 4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5 4
Macropus_eugenii_69_1.0   (Tammar wallaby)   7 5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8 6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8 6
Ornithorhynchus_anatinus_69_5   (Platypus)   9 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   6 4
Gallus_gallus_69_2   (Chicken)   6 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5 4
Anolis_carolinensis_69_2.0   (Green anole)   7 5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8 6
Latimeria_chalumnae_69_1   (Coelacanth)   8 6
Gadus_morhua_69_1   (Atlantic cod)   7 6
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   7 5
Takifugu_rubripes_69_4   (Torafugu)   8 6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   8 6
Oryzias_latipes_69_1   (Japanese medaka)   7 6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8 6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7 6
Danio_rerio_69_9   (Zebrafish)   8 5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   4 3
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   31 25
Homo_sapiens__(NCBI_version)   (Human)   16 14
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7 5
Loa_loa_v3.3_(Request)   (Eye worm)   3 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 2
STRING_v9.0.5_(STRING) 260 215
Protein_Data_Bank_(all_PDB_sequenc) 5 5
Uniprot_2018_03_genome 2953 2464
NCBI_2017_08_genome 6676 5097
TargetDB__(Targets) 13 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 10 10
PDB_chains_(SCOP_1.75)_(PDB) 5 5

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