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Domain combinations for BT0923-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a BT0923-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1 1
Anabaena_variabilis_ATCC_29413 1 1
Nostoc_sp._PCC_7107 1 1
Nostoc_sp._PCC_7120 1 1
Streptococcus_agalactiae_A909 1 1
Listeria_innocua_Clip11262 1 1
Ignavibacterium_album_JCM_16511 1 1
Haliscomenobacter_hydrossis_DSM_1100 4 2
Saprospira_grandis_str._Lewin 3 3
Niastella_koreensis_GR20-10 10 10
Chitinophaga_pinensis_DSM_2588 5 5
Flexibacter_litoralis_DSM_6794 3 3
Belliella_baltica_DSM_15883 1 1
Cyclobacterium_marinum_DSM_745 2 2
Marivirga_tractuosa_DSM_4126 1 1
Fibrella_aestuarina 8 6
Leadbetterella_byssophila_DSM_17132 2 2
Dyadobacter_fermentans_DSM_18053 4 4
Cytophaga_hutchinsonii_ATCC_33406 3 3
Spirosoma_linguale_DSM_74 6 5
Runella_slithyformis_DSM_19594 2 2
Parabacteroides_distasonis_ATCC_8503 9 7
Odoribacter_splanchnicus_DSM_20712 10 7
Porphyromonas_asaccharolytica_DSM_20707 2 2
Alistipes_finegoldii_DSM_17242 11 8
Bacteroides_salanitronis_DSM_18170 6 4
Bacteroides_helcogenes_P_36-108 3 3
Bacteroides_vulgatus_ATCC_8482 9 8
Bacteroides_thetaiotaomicron_VPI-5482 8 7
Bacteroides_fragilis_YCH46 14 11
Pedobacter_saltans_DSM_12145 2 2
Solitalea_canadensis_DSM_3403 3 3
Sphingobacterium_sp._21 4 4
Fluviicola_taffensis_DSM_16823 2 2
Owenweeksia_hongkongensis_DSM_17368 4 4
Zunongwangia_profunda_SM-A87 2 2
Krokinobacter_sp._4H-3-7-5 2 2
Gramella_forsetii_KT0803 4 4
Lacinutrix_sp._5H-3-7-4 3 3
Maribacter_sp._HTCC2170 1 1
Robiginitalea_biformata_HTCC2501 2 2
Croceibacter_atlanticus_HTCC2559 3 3
Aequorivita_sublithincola_DSM_14238 6 5
Zobellia_galactanivorans 7 7
Muricauda_ruestringensis_DSM_13258 2 2
Cellulophaga_algicola_DSM_14237 9 9
Flavobacteriaceae_bacterium_3519-10 1 1
Polaribacter_sp._MED152 1 1
Capnocytophaga_canimorsus_Cc5 4 2
Capnocytophaga_ochracea_DSM_7271 3 3
Weeksella_virosa_DSM_16922 2 2
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_johnsoniae_UW101 8 8
Akkermansia_muciniphila_ATCC_BAA-835 3 3
Turneriella_parva_DSM_21527 1 1
Brachyspira_murdochii_DSM_12563 17 17
Brachyspira_intermedia_PWS/A 19 19
Brachyspira_pilosicoli_95/1000 14 14
Brachyspira_hyodysenteriae_WA1 21 21
Treponema_brennaborense_DSM_12168 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Bacteriovorax_marinus_SJ 1 1
Campylobacter_lari_RM2100 4 4
Campylobacter_jejuni_subsp._doylei_269.97 2 2
Nitrosospira_multiformis_ATCC_25196 3 3
Nitrosomonas_sp._Is79A3 1 1
Caulobacter_crescentus_NA1000 1 1
Phenylobacterium_zucineum_HLK1 1 1
Saccharophagus_degradans_2-40 2 2
Alteromonas_sp._SN2 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Methylomonas_methanica_MC09 2 2
Methylococcus_capsulatus_str._Bath 2 2
Thermococcus_sibiricus_MM_739 1 1
Acholeplasma_laidlawii_PG-8A 1 1

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Strains
Genome     Number   Proteins
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Enterococcus_casseliflavus_EC20 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Paenibacillus_polymyxa_SC2 1 1
Listeria_monocytogenes_M7 1 1
Listeria_monocytogenes_SLCC2376 1 1
Listeria_monocytogenes_L99 1 1
Listeria_monocytogenes_HCC23 1 1
Amphibacillus_xylanus_NBRC_15112 1 1
Echinicola_vietnamensis_DSM_17526 2 2
Emticicia_oligotrophica_DSM_17448 4 2
Porphyromonas_gingivalis_TDC60 4 2
Porphyromonas_gingivalis_W83 4 2
Alistipes_shahii_WAL_8301 3 3
Bacteroides_xylanisolvens_XB1A 6 5
Bacteroides_fragilis_638R 13 10
Bacteroides_fragilis_NCTC_9343 14 11
Nonlabens_dokdonensis_DSW-6 2 2
Psychroflexus_torquis_ATCC_700755 2 2
Singulisphaera_acidiphila_DSM_18658 1 1
Brachyspira_pilosicoli_WesB 14 14
Brachyspira_pilosicoli_B2904 13 13
Brachyspira_pilosicoli_P43/6/78 14 14
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 2 2
Campylobacter_jejuni_RM1221 2 2
Campylobacter_jejuni_subsp._jejuni_00-2544 3 3
Campylobacter_jejuni_subsp._jejuni_00-2538 3 3
Campylobacter_jejuni_subsp._jejuni_00-2426 3 3
Campylobacter_jejuni_subsp._jejuni_00-2425 2 2
Campylobacter_jejuni_subsp._jejuni_PT14 2 2
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 2 2
Campylobacter_jejuni_subsp._jejuni_S3 2 2
Campylobacter_jejuni_subsp._jejuni_M1 2 2
Campylobacter_jejuni_subsp._jejuni_IA3902 2 2
Campylobacter_jejuni_subsp._jejuni_81116 2 2
Campylobacter_jejuni_subsp._jejuni_81-176 2 2
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 3 3
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 2 2
Campylobacter_coli_76339 3 3
Campylobacter_coli_15-537360 3 3
Campylobacter_coli_CVM_N29710 3 3
Desulfobacula_toluolica_Tol2 2 2
Sorangium_cellulosum_So0157-2 1 1
Nitrosomonas_sp._AL212 1 1
Caulobacter_crescentus_CB15 1 1
Octadecabacter_antarcticus_307 1 1
Methylophaga_sp._JAM7 1 1
Thermococcus_litoralis_DSM_5473 1 1

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Longest transcript per gene
Genome     Number   Proteins
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1 1

Others
Genome     Number   Proteins
Acholeplasma_laidlawii_PG-8A_(duplicate) 1 1
NCBI_plasmid_sequences_(Plasmids) 7 7
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 25 22
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 46 46
TargetDB__(Targets) 76 63
STRING_v9.0.5_(STRING) 154 141
Uniprot_2018_03_genome 5532 4945
NCBI_2017_08_genome 13386 12529

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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