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Domain combinations for gpW/gp25-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a gpW/gp25-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Capitella_sp._I_ 1 1
Caenorhabditis_japonica_ 1 1
Phytophthora_capsici_ 1 1
Leptolyngbya_sp._PCC_7376 1 1
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 1 1
Synechococcus_elongatus_PCC_7942 1 1
Microcoleus_sp._PCC_7113 1 1
Gloeobacter_violaceus_PCC_7421 1 1
Rivularia_sp._PCC_7116 2 2
Calothrix_sp._PCC_7507 3 3
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 2 2
Nostoc_sp._PCC_7120 1 1
Nostoc_sp._PCC_7524 2 2
Conexibacter_woesei_DSM_14684 2 2
Ilumatobacter_coccineus 1 1
Acidimicrobium_ferrooxidans_DSM_10331 1 1
Nakamurella_multipartita_DSM_44233 2 2
Blastococcus_saxobsidens_DD2 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Frankia_symbiont_of_Datisca_glomerata 1 1
Frankia_sp._EAN1pec 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 2 2
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Actinosynnema_mirum_DSM_43827 2 2
Amycolatopsis_mediterranei_U32 1 1
Microlunatus_phosphovorus_NM-1 2 2
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._SE50/110 1 1
Mycobacterium_sp._JLS 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_flavigena_DSM_20109 1 1
Cellulomonas_fimi_ATCC_484 1 1
Arthrobacter_aurescens_TC1 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Megasphaera_elsdenii_DSM_20460 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Clostridium_cellulolyticum_H10 1 1
Clostridium_thermocellum_ATCC_27405 1 1
Faecalibacterium_prausnitzii 1 1
Oscillibacter_valericigenes_Sjm18-20 4 4
butyrate-producing_bacterium_SS3/4 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Syntrophobotulus_glycolicus_DSM_8271 5 5
Desulfitobacterium_hafniense_Y51 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 2 2
Desulfotomaculum_reducens_MI-1 1 1
Desulfotomaculum_ruminis_DSM_2154 2 2
Clostridium_difficile_630 2 2
Clostridium_sticklandii_DSM_519 1 1
Clostridium_saccharolyticum_WM1 2 2
Clostridium_phytofermentans_ISDg 2 2
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_torques 1 1
Alkaliphilus_metalliredigens_QYMF 3 3
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1
Clostridium_sp._BNL1100 2 2
Clostridium_botulinum_A_str._ATCC_3502 1 1
Streptococcus_mitis_B6 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_mucilaginosus_3016 1 1
Listeria_innocua_Clip11262 2 2
Lysinibacillus_sphaericus_C3-41 2 2
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Bacillus_weihenstephanensis_KBAB4 1 1
Gemmatimonas_aurantiaca_T-27 2 2
Chlorobaculum_parvum_NCIB_8327 1 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 4 4
Candidatus_Amoebophilus_asiaticus_5a2 1 1
Candidatus_Cardinium_hertigii 1 1
Cyclobacterium_marinum_DSM_745 1 1
Fibrella_aestuarina 1 1
Dyadobacter_fermentans_DSM_18053 2 2
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 1 1
Parabacteroides_distasonis_ATCC_8503 1 1
Prevotella_intermedia_17 1 1
Bacteroides_salanitronis_DSM_18170 1 1
Bacteroides_fragilis_YCH46 2 2
Solitalea_canadensis_DSM_3403 1 1
Sphingobacterium_sp._21 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Lacinutrix_sp._5H-3-7-4 1 1
Zobellia_galactanivorans 1 1
Cellulophaga_algicola_DSM_14237 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 2 2
Planctomyces_brasiliensis_DSM_5305 1 1
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Fretibacterium_fastidiosum 1 1
Aminobacterium_colombiense_DSM_12261 1 1
Borrelia_duttonii_Ly 3 3
Treponema_succinifaciens_DSM_2489 1 1
Persephonella_marina_EX-H1 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_tundricola_MP5ACTX9 2 2
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 2 2
Candidatus_Nitrospira_defluvii 2 2
Leptospirillum_ferrooxidans_C2-3 1 1
Sebaldella_termitidis_ATCC_33386 2 2
Ilyobacter_polytropus_DSM_2926 2 2
Nitratifractor_salsuginis_DSM_16511 1 1
Arcobacter_sp._L 2 2
Arcobacter_nitrofigilis_DSM_7299 1 1
Arcobacter_butzleri_RM4018 1 1
Campylobacter_concisus_13826 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Helicobacter_hepaticus_ATCC_51449 1 1
Helicobacter_cinaedi_PAGU611 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Syntrophus_aciditrophicus_SB 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Lawsonia_intracellularis_PHE/MN1-00 1 1
Desulfovibrio_alaskensis_G20 3 3
Desulfovibrio_salexigens_DSM_2638 2 2
Desulfovibrio_africanus_str._Walvis_Bay 2 2
Geobacter_daltonii_FRC-32 1 1
Geobacter_sp._M21 3 3
Geobacter_bemidjiensis_Bem 2 2
Geobacter_sulfurreducens_KN400 2 2
Geobacter_metallireducens_GS-15 2 2
Pelobacter_propionicus_DSM_2379 2 2
Pelobacter_carbinolicus_DSM_2380 2 2
Haliangium_ochraceum_DSM_14365 6 6
Sorangium_cellulosum_'So_ce_56' 3 3
Stigmatella_aurantiaca_DW4/3-1 4 4
Corallococcus_coralloides_DSM_2259 4 4
Myxococcus_xanthus_DK_1622 3 3
Myxococcus_fulvus_HW-1 2 2
Dechloromonas_aromatica_RCB 2 2
Thauera_sp._MZ1T 1 1
Azoarcus_sp._KH32C 2 2
Azoarcus_sp._BH72 2 2
Pseudogulbenkiania_sp._NH8B 3 3
Laribacter_hongkongensis_HLHK9 4 4
Chromobacterium_violaceum_ATCC_12472 3 3
Neisseria_meningitidis_alpha14 1 1
Neisseria_lactamica_020-06 1 1
Neisseria_gonorrhoeae_NCCP11945 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 2 2
Rubrivivax_gelatinosus_IL144 2 2
Leptothrix_cholodnii_SP-6 2 2
Burkholderia_rhizoxinica_HKI_454 4 4
Burkholderia_phytofirmans_PsJN 2 2
Burkholderia_phymatum_STM815 2 2
Burkholderia_xenovorans_LB400 1 1
Ralstonia_eutropha_JMP134 2 2
Cupriavidus_taiwanensis_LMG_19424 3 3
Cupriavidus_metallidurans_CH34 1 1
Ralstonia_eutropha_H16 2 2
Ralstonia_pickettii_12D 1 1
Ralstonia_solanacearum_CFBP2957 2 2
Burkholderia_sp._RPE64 2 2
Burkholderia_sp._CCGE1002 3 3
Burkholderia_thailandensis_E264 6 6
Burkholderia_pseudomallei_1106a 6 6
Burkholderia_mallei_SAVP1 5 5
Burkholderia_ambifaria_AMMD 3 3
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_vietnamiensis_G4 4 4
Burkholderia_gladioli_BSR3 6 6
Burkholderia_glumae_BGR1 7 7
Alicycliphilus_denitrificans_K601 1 1
Delftia_sp._Cs1-4 2 2
Delftia_acidovorans_SPH-1 3 3
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 2 2
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Collimonas_fungivorans_Ter331 3 3
Herbaspirillum_seropedicae_SmR1 4 4
Pusillimonas_sp._T7-7 2 2
Advenella_kashmirensis_WT001 1 1
Taylorella_asinigenitalis_MCE3 1 1
Taylorella_equigenitalis_MCE9 1 1
Bordetella_petrii_DSM_12804 3 3
Bordetella_avium_197N 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 2 2
Achromobacter_xylosoxidans_A8 2 2
Achromobacter_xylosoxidans 1 1
Nitrosomonas_sp._Is79A3 1 1
Caulobacter_sp._K31 2 2
Erythrobacter_litoralis_HTCC2594 1 1
Novosphingobium_sp._PP1Y 1 1
Dinoroseobacter_shibae_DFL_12 2 2
Pseudovibrio_sp._FO-BEG1 4 4
Jannaschia_sp._CCS1 1 1
Ruegeria_sp._TM1040 1 1
Roseobacter_litoralis_Och_149 1 1
Roseobacter_denitrificans_OCh_114 1 1
Rhodobacter_sphaeroides_ATCC_17029 1 1
Paracoccus_denitrificans_PD1222 1 1
Tistrella_mobilis_KA081020-065 2 2
Magnetospirillum_magneticum_AMB-1 1 1
Rhodospirillum_centenum_SW 1 1
Azospirillum_lipoferum_4B 1 1
Azospirillum_sp._B510 3 3
Azospirillum_brasilense_Sp245 1 1
Gluconacetobacter_xylinus_NBRC_3288 1 1
Acidiphilium_multivorum_AIU301 1 1
Acidiphilium_cryptum_JF-5 1 1
Gluconobacter_oxydans_621H 2 2
Polymorphum_gilvum_SL003B-26A1 1 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 4 4
Wolbachia_sp._wRi 4 4
Azorhizobium_caulinodans_ORS_571 2 2
Methylobacterium_sp._4-46 1 1
Methylobacterium_nodulans_ORS_2060 2 2
Ochrobactrum_anthropi_ATCC_49188 2 2
Rhizobium_etli_CIAT_652 2 2
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Agrobacterium_tumefaciens_str._C58 1 1
Agrobacterium_vitis_S4 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 2 2
Methylocella_silvestris_BL2 1 1
Oligotropha_carboxidovorans_OM4 1 1
Nitrobacter_hamburgensis_X14 2 2
Bradyrhizobium_japonicum_USDA_110 1 1
Bradyrhizobium_sp._ORS_278 1 1
Bartonella_tribocorum_CIP_105476 7 7
Bartonella_henselae_str._Houston-1 1 1
Bartonella_grahamii_as4aup 3 3
Saccharophagus_degradans_2-40 2 2
Teredinibacter_turnerae_T7901 3 3
Cellvibrio_japonicus_Ueda107 2 2
Aggregatibacter_aphrophilus_NJ8700 1 1
Gallibacterium_anatis_UMN179 2 2
Haemophilus_parasuis_SH0165 1 1
Haemophilus_parainfluenzae_T3T1 1 1
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Aliivibrio_salmonicida_LFI1238 2 2
Vibrio_fischeri_MJ11 2 2
Vibrio_sp._Ex25 2 2
Vibrio_harveyi_ATCC_BAA-1116 2 2
Vibrio_parahaemolyticus_RIMD_2210633 2 2
Vibrio_splendidus_LGP32 2 2
Vibrio_anguillarum_775 2 2
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 1 1
Psychromonas_ingrahamii_37 1 1
Psychromonas_sp._CNPT3 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Pseudoalteromonas_sp._SM9913 1 1
Marinobacter_adhaerens_HP15 2 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_posidonica_IVIA-Po-181 2 2
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 4 4
Chromohalobacter_salexigens_DSM_3043 2 2
Halomonas_elongata_DSM_2581 1 1
Methylomicrobium_alcaliphilum 2 2
Methylomonas_methanica_MC09 2 2
Methylococcus_capsulatus_str._Bath 1 1
Rhodanobacter_denitrificans 1 1
Frateuria_aurantia_DSM_6220 2 2
Stenotrophomonas_maltophilia_K279a 2 2
Xylella_fastidiosa_M23 2 2
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 3 3
Alkalilimnicola_ehrlichii_MLHE-1 2 2
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Halorhodospira_halophila_SL1 1 1
Thiocystis_violascens_DSM_198 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
gamma_proteobacterium_HdN1 1 1
Photorhabdus_asymbiotica 13 13
Photorhabdus_luminescens_subsp._laumondii_TTO1 13 13
Xenorhabdus_bovienii_SS-2004 3 3
Xenorhabdus_nematophila_ATCC_19061 4 4
Providencia_stuartii_MRSN_2154 1 1
Proteus_mirabilis_HI4320 2 2
Edwardsiella_ictaluri_93-146 2 2
Edwardsiella_tarda_EIB202 1 1
Rahnella_sp._Y9602 5 5
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 5 5
Yersinia_pseudotuberculosis_IP_31758 5 5
Yersinia_pestis_Pestoides_F 4 4
Yersinia_enterocolitica_subsp._enterocolitica_8081 2 2
Serratia_sp._AS12 1 1
Serratia_sp._ATCC_39006 1 1
Serratia_plymuthica_AS9 1 1
Serratia_proteamaculans_568 4 4
Dickeya_dadantii_Ech703 2 2
Dickeya_zeae_Ech1591 3 3
Pectobacterium_wasabiae_WPP163 3 3
Pectobacterium_sp._SCC3193 3 3
Pectobacterium_atrosepticum_SCRI1043 3 3
Pectobacterium_carotovorum_subsp._carotovorum_PC1 4 4
Sodalis_glossinidius_str._'morsitans' 2 2
Pantoea_sp._At-9b 4 4
Pantoea_vagans_C9-1 3 3
Pantoea_ananatis_LMG_20103 4 4
Erwinia_tasmaniensis_Et1/99 2 2
Erwinia_sp._Ejp617 1 1
Erwinia_billingiae_Eb661 4 4
Erwinia_pyrifoliae_Ep1/96 1 1
Erwinia_amylovora_ATCC_49946 2 2
Escherichia_blattae_DSM_4481 1 1
Cronobacter_turicensis_z3032 4 4
Cronobacter_sakazakii_ES15 3 3
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Shigella_flexneri_5_str._8401 2 2
Shigella_boydii_CDC_3083-94 2 2
Salmonella_bongori_NCTC_12419 3 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 3 3
Klebsiella_oxytoca_E718 3 3
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Enterobacter_aerogenes_KCTC_2190 2 2
Escherichia_fergusonii_ATCC_35469 3 3
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 2 2
Enterobacter_sp._R4-368 4 4
Enterobacter_sp._638 1 1
Enterobacter_asburiae_LF7a 4 4
Enterobacter_cloacae_subsp._dissolvens_SDM 2 2
Citrobacter_rodentium_ICC168 4 4
Azotobacter_vinelandii_DJ 3 3
Pseudomonas_sp._TKP 3 3
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2 2
Pseudomonas_entomophila_L48 2 2
Pseudomonas_syringae_pv._tomato_str._DC3000 3 3
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 2 2
Pseudomonas_protegens_Pf-5 2 2
Pseudomonas_fluorescens_SBW25 3 3
Pseudomonas_mendocina_ymp 2 2
Pseudomonas_aeruginosa_UCBPP-PA14 4 4
Pseudomonas_sp._VLB120 1 1
Psychrobacter_sp._G 1 1
Acinetobacter_oleivorans_DR1 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Acinetobacter_baumannii_ATCC_17978 1 1
Acinetobacter_sp._ADP1 1 1
Thiomicrospira_crunogena_XCL-2 1 1
Francisella_cf._novicida_3523 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanocella_paludicola_SANAE 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Natrinema_sp._J7-2 1 1
Natrialba_magadii_ATCC_43099 2 2
Halogeometricum_borinquense_DSM_11551 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Synechococcus_elongatus_PCC_6301 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Oscillatoria_acuminata_PCC_6304 1 1
Arthrospira_platensis_NIES-39 1 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7424 2 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 2 2
Cylindrospermum_stagnale_PCC_7417 1 1
Anabaena_cylindrica_PCC_7122 1 1
Frankia_sp._EuI1c 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 3 3
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Saccharothrix_espanaensis_DSM_44229 2 2
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Deinococcus_peraridilitoris_DSM_19664 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1 1
Clostridium_sp._SY8519 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 2 2
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Enterococcus_faecalis_V583 1 1
Lactobacillus_reuteri_TD1 1 1
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_brevis_KB290 2 2
Paenibacillus_sp._Y412MC10 2 2
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Paenibacillus_polymyxa_CR1 2 2
Geobacillus_sp._Y4.1MC1 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1 1
Bacillus_amyloliquefaciens_LFB112 1 1
Bacillus_amyloliquefaciens_IT-45 1 1
Bacillus_amyloliquefaciens_XH7 2 2
Bacillus_amyloliquefaciens_LL3 1 1
Bacillus_amyloliquefaciens_TA208 2 2
Bacillus_amyloliquefaciens_DSM_7 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 2 2
Bacillus_thuringiensis_HD-789 1 1
Bacillus_cereus_G9842 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Leptospirillum_ferriphilum_ML-04 1 1
Campylobacter_jejuni_RM1221 1 1
Campylobacter_jejuni_subsp._jejuni_00-2544 1 1
Campylobacter_jejuni_subsp._jejuni_00-2538 1 1
Campylobacter_jejuni_subsp._jejuni_00-2425 1 1
Campylobacter_jejuni_subsp._jejuni_S3 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Lawsonia_intracellularis_N343 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 4 4
Desulfovibrio_vulgaris_RCH1 2 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 2 2
Desulfovibrio_vulgaris_str._Hildenborough 2 2
Geobacter_sp._M18 2 2
Geobacter_sulfurreducens_PCA 2 2
Sorangium_cellulosum_So0157-2 6 6
Myxococcus_stipitatus_DSM_14675 5 5
Neisseria_meningitidis_WUE_2594 1 1
Neisseria_meningitidis_Z2491 1 1
Neisseria_meningitidis_alpha710 1 1
Neisseria_gonorrhoeae_TCDC-NG08107 1 1
Neisseria_gonorrhoeae_FA_1090 1 1
Burkholderia_phenoliruptrix_BR3459a 2 2
Ralstonia_solanacearum_FQY_4 2 2
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 2 2
Ralstonia_solanacearum_CMR15 3 3
Ralstonia_solanacearum_GMI1000 2 2
Burkholderia_sp._YI23 5 5
Burkholderia_sp._CCGE1003 4 4
Burkholderia_sp._CCGE1001 3 3
Burkholderia_sp._KJ006 5 5
Burkholderia_thailandensis_MSMB121 7 7
Burkholderia_pseudomallei_MSHR305 7 7
Burkholderia_pseudomallei_NCTC_13179 7 7
Burkholderia_pseudomallei_BPC006 7 7
Burkholderia_pseudomallei_1026b 9 9
Burkholderia_pseudomallei_MSHR346 2 2
Burkholderia_pseudomallei_668 6 6
Burkholderia_pseudomallei_1710b 6 6
Burkholderia_pseudomallei_K96243 8 8
Burkholderia_mallei_NCTC_10229 5 5
Burkholderia_mallei_NCTC_10247 5 5
Burkholderia_mallei_ATCC_23344 4 4
Burkholderia_lata 3 3
Burkholderia_ambifaria_MC40-6 4 4
Burkholderia_cenocepacia_MC0-3 2 2
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 3 3
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_cepacia_GG4 2 2
Alicycliphilus_denitrificans_BC 2 2
Variovorax_paradoxus_B4 2 2
Variovorax_paradoxus_EPS 4 4
Taylorella_asinigenitalis_14/45 1 1
Taylorella_equigenitalis_14/56 1 1
Taylorella_equigenitalis_ATCC_35865 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Phaeobacter_gallaeciensis_DSM_17395 1 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Rhodobacter_sphaeroides_KD131 1 1
Rhodobacter_sphaeroides_ATCC_17025 1 1
Rhodobacter_sphaeroides_2.4.1 1 1
Paracoccus_aminophilus_JCM_7686 1 1
Gluconobacter_oxydans_H24 1 1
Acetobacter_pasteurianus_386B 1 1
Wolbachia_endosymbiont_of_Drosophila_melanogaster 2 2
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 2 2
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 2 2
Sinorhizobium_fredii_USDA_257 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_tropici_CIAT_899 1 1
Oligotropha_carboxidovorans_OM5 1 1
Oligotropha_carboxidovorans_OM5 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Bradyrhizobium_oligotrophicum_S58 2 2
Bradyrhizobium_japonicum_USDA_6 1 1
Bartonella_australis_Aust/NH1 1 1
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 2 2
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Mannheimia_succiniciproducens_MBEL55E 1 1
Haemophilus_somnus_2336 1 1
Mannheimia_haemolytica_USMARC_2286 2 2
Mannheimia_haemolytica_M42548 2 2
Mannheimia_haemolytica_D174 3 3
Mannheimia_haemolytica_D153 2 2
Mannheimia_haemolytica_USDA-ARS-USMARC-183 2 2
Haemophilus_parasuis_ZJ0906 1 1
Haemophilus_influenzae_F3047 1 1
Haemophilus_influenzae_F3031 1 1
Haemophilus_influenzae_86-028NP 1 1
Haemophilus_influenzae_R2866 1 1
Vibrio_fischeri_ES114 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 2 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2 2
Vibrio_anguillarum_Listonella_anguillarum_M3 2 2
Vibrio_nigripulchritudo_VibrioScope 2 2
Vibrio_vulnificus_CMCP6 2 2
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS195 1 1
Alcanivorax_dieselolei_B5 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 2 2
Xylella_fastidiosa_M12 2 2
Xylella_fastidiosa_Temecula1 2 2
Xylella_fastidiosa_9a5c 4 4
Xanthomonas_citri_subsp._citri_Aw12879 3 3
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2 2
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 2 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 3 3
Xanthomonas_oryzae_pv._oryzae_KACC_10331 3 3
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Thioflavicoccus_mobilis_8321 1 1
Proteus_mirabilis_BB2000 1 1
Morganella_morganii_subsp._morganii_KT 2 2
Edwardsiella_tarda_C07-087 4 4
Edwardsiella_tarda_FL6-60 1 1
Rahnella_aquatilis_HX2 5 5
Yersinia_pseudotuberculosis_PB1/+ 5 5
Yersinia_pseudotuberculosis_YPIII 6 6
Yersinia_pseudotuberculosis_IP_32953 6 6
Yersinia_pestis_biovar_Microtus_str._91001 4 4
Yersinia_pestis_A1122 4 4
Yersinia_pestis_Z176003 3 3
Yersinia_pestis_D182038 3 3
Yersinia_pestis_D106004 3 3
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 4 4
Yersinia_pestis_Nepal516 4 4
Yersinia_pestis_Antiqua 4 4
Yersinia_pestis_Angola 4 4
Yersinia_pestis_CO92 4 4
Yersinia_pestis_KIM10+ 4 4
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 2 2
Yersinia_enterocolitica_subsp._palearctica_Y11 4 4
Serratia_sp._AS13 1 1
Serratia_plymuthica_S13 1 1
Serratia_marcescens_FGI94 3 3
Serratia_marcescens_WW4 2 2
Dickeya_dadantii_Ech586 3 3
Dickeya_dadantii_3937 3 3
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 2 2
Pantoea_ananatis_LMG_5342 2 2
Pantoea_ananatis_PA13 3 3
Pantoea_ananatis_AJ13355 3 3
Erwinia_pyrifoliae_DSM_12163 1 1
Erwinia_amylovora_CFBP1430 2 2
Cronobacter_sakazakii_CMCC_45402 3 3
Cronobacter_sakazakii_SP291 4 4
Cronobacter_sakazakii_ATCC_BAA-894 3 3
Shigella_sonnei_53G 3 3
Shigella_flexneri_2002017 2 2
Shigella_flexneri_2a_str._2457T 2 2
Shigella_flexneri_2a_str._301 2 2
Shigella_boydii_Sb227 2 2
Salmonella_bongori_N268-08 6 6
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 6 6
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 4 4
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 3 3
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 3 3
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 2 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 4 4
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 3 3
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 3 3
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 5 5
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 4 4
Salmonella_enterica_serovar_Bovismorbificans_genomics 2 2
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 3 3
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 4 4
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 3 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 3 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 3 3
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 4 4
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 3 3
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 2 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 2 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 2 2
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 2 2
Klebsiella_oxytoca_KCTC_1686 2 2
Klebsiella_pneumoniae_JM45 3 3
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_KCTC_2242 2 2
Klebsiella_pneumoniae_342 2 2
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 3 3
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 2 2
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 3 3
Enterobacter_aerogenes_EA1509E 3 3
Escherichia_coli_E24377A 4 4
Escherichia_coli_E._coli_PMV-1 4 4
Escherichia_coli_JJ1886 5 5
Escherichia_coli_LY180 5 5
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O7:K1_str._CE10 2 2
Escherichia_coli_O104:H4_str._2009EL-2050 3 3
Escherichia_coli_O104:H4_str._2009EL-2071 3 3
Escherichia_coli_O104:H4_str._2011C-3493 3 3
Escherichia_coli_NA114 6 6
Escherichia_coli_P12b 2 2
Escherichia_coli_str._'clone_D_i2' 2 2
Escherichia_coli_str._'clone_D_i14' 2 2
Escherichia_coli_UM146 3 3
Escherichia_coli_042 3 3
Escherichia_coli_Xuzhou21 2 2
Escherichia_coli_IHE3034 5 5
Escherichia_coli_UMNK88 4 4
Escherichia_coli_O83:H1_str._NRG_857C 3 3
Escherichia_coli_ABU_83972 3 3
Escherichia_coli_KO11FL 6 6
Escherichia_coli_KO11FL 6 6
Escherichia_coli_LF82 4 4
Escherichia_coli_ED1a 4 4
Escherichia_coli_IAI39 3 3
Escherichia_coli_UMN026 2 2
Escherichia_coli_55989 4 4
Escherichia_coli_S88 5 5
Escherichia_coli_IAI1 2 2
Escherichia_coli_W 6 6
Escherichia_coli_W 6 6
Escherichia_coli_DH1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_ATCC_8739 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_SMS-3-5 2 2
Escherichia_coli_SE15 2 2
Escherichia_coli_SE11 4 4
Escherichia_coli_APEC_O1 4 4
Escherichia_coli_O103:H2_str._12009 4 4
Escherichia_coli_UTI89 4 4
Escherichia_coli_536 3 3
Escherichia_coli_HS 3 3
Escherichia_coli_ETEC_H10407 2 2
Escherichia_coli_O55:H7_str._RM12579 2 2
Escherichia_coli_O55:H7_str._CB9615 3 3
Escherichia_coli_O26:H11_str._11368 3 3
Escherichia_coli_CFT073 3 3
Escherichia_coli_O111:H-_str._11128 3 3
Escherichia_coli_O127:H6_str._E2348/69 3 3
Escherichia_coli_O157:H7_str._TW14359 3 3
Escherichia_coli_O157:H7_str._EC4115 3 3
Escherichia_coli_O157:H7_str._Sakai 2 2
Escherichia_coli_O157:H7_str._EDL933 2 2
Escherichia_coli_BW2952 1 1
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_B_str._REL606 3 3
Enterobacter_cloacae_SCF1 1 1
Enterobacter_cloacae_EcWSU1 5 5
Enterobacter_cloacae_subsp._cloacae_ENHKU01 4 4
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 2 2
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 3 3
Azotobacter_vinelandii_CA6 3 3
Azotobacter_vinelandii_CA 3 3
Pseudomonas_denitrificans_ATCC_13867 2 2
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 2 2
Pseudomonas_monteilii_SB3078 2 2
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 2 2
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 3 3
Pseudomonas_putida_S16 2 2
Pseudomonas_putida_W619 3 3
Pseudomonas_putida_ND6 4 4
Pseudomonas_putida_KT2440 4 4
Pseudomonas_putida_GB-1 3 3
Pseudomonas_protegens_CHA0 3 3
Pseudomonas_poae_RE*1-1-14 4 4
Pseudomonas_fluorescens_F113 5 5
Pseudomonas_fluorescens_A506 4 4
Pseudomonas_fluorescens_R124 3 3
Pseudomonas_fluorescens_Pf0-1 3 3
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_mendocina_NK-01 2 2
Pseudomonas_aeruginosa_SCV20265 4 4
Pseudomonas_aeruginosa_MTB-1 6 6
Pseudomonas_aeruginosa_LES431 4 4
Pseudomonas_aeruginosa_RP73 3 3
Pseudomonas_aeruginosa_B136-33 4 4
Pseudomonas_aeruginosa_PA1R 5 5
Pseudomonas_aeruginosa_PA1 5 5
Pseudomonas_aeruginosa_DK2 4 4
Pseudomonas_aeruginosa_NCGM2.S1 5 5
Pseudomonas_aeruginosa_M18 3 3
Pseudomonas_aeruginosa_LESB58 4 4
Pseudomonas_aeruginosa_PA7 4 4
Pseudomonas_aeruginosa_PAO1 4 4
Acinetobacter_calcoaceticus_ruh2202 1 1
Acinetobacter_baumannii_ZW85-1 1 1
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Acinetobacter_baumannii_AB307-0294 1 1
Acinetobacter_baumannii_AYE 2 2
Acinetobacter_baumannii_SDF 2 2
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_baumannii_ACICU 1 1
Acinetobacter_radioresistens__SH164 1 1
Acinetobacter_johnsonii__SH046 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Halovivax_ruber_XH-70 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 60 60
Uniprot_2018_03_genome 14429 14429
NCBI_2017_08_genome 100569 100569
Protein_Data_Bank_(all_PDB_sequenc) 16 16
TargetDB__(Targets) 87 87
PDB_chains_(SCOP_1.75)_(PDB) 1 1
UniProt__viral_sequences_(Viral) 89 89
NCBI_viral_sequences_(Viral) 211 211
STRING_v9.0.5_(STRING) 729 729
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 21 21

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.