SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for RAP domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RAP domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   4 2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3 1
Gorilla_gorilla_76_3.1   (Western gorilla)   9 3
Pongo_abelii_76_2   (Sumatran orangutan)   3 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3 1
Papio_anubis_76   (Olive baboon)   3 1
Macaca_mulatta_76_1   (Rhesus monkey)   3 1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   9 3
Otolemur_garnettii_76_3   (Small-eared galago)   3 1
Microcebus_murinus_76_1   (Gray mouse lemur)   3 1
Rattus_norvegicus_76_5.0   (Norway rat)   3 1
Mus_musculus_76_38   (House mouse)   4 2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6 2
Cavia_porcellus_76_3   (Domestic guinea pig)   3 1
Ochotona_princeps_76   (American pika)   3 1
Tupaia_belangeri_76   (Northern tree shrew)   3 1
Sus_scrofa_76_10.2   (Pig)   3 1
Bos_taurus_76_3.1   (Cattle)   3 1
Ovis_aries_76_3.1   (Sheep)   5 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 1
Ailuropoda_melanoleuca_76_1   (Giant panda)   3 1
Canis_familiaris_76_3.1   (Dog)   3 1
Felis_catus_76_6.2   (Domestic cat)   3 1
Equus_caballus_76_2   (Horse)   3 1
Myotis_lucifugus_76_2.0   (Little brown bat)   2 1
Pteropus_vampyrus_76_1   (Large flying fox)   3 1
Procavia_capensis_76_1   (Cape rock hyrax)   2 1
Loxodonta_africana_76_3   (African savanna elephant)   3 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2 1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3 1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3 1
Saccoglossus_kowalevskii_v3.0 5 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   6 2
Meleagris_gallopavo_76_2   (Turkey)   3 1
Gallus_gallus_76_4   (Chicken)   3 1
Anas_platyrhynchos_76_1.0   (Mallard)   3 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3 1
Anolis_carolinensis_76_2.0   (Green anole)   1 1
Xenopus_laevis_   (African clawed frog)   3 1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3 1
Lepisosteus_oculatus_76   (Spotted gar)   6 2
Gadus_morhua_76_1   (Atlantic cod)   3 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3 1
Takifugu_rubripes_76_4   (Torafugu)   6 2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3 1
Oryzias_latipes_76_1   (Japanese medaka)   3 1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3 1
Poecilia_formosa_76   (Amazon molly)   3 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3 1
Astyanax_mexicanus_76   (Mexican tetra)   3 1
Danio_rerio_76_9   (Zebrafish)   3 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 1
Ciona_intestinalis_76   (Vase tunicate)   3 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 1
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   3 1
Lottia_gigantea_   (Owl limpet)   3 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 2
Heliconius_melpomene_   (Postman butterfly)   3 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   3 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 1
Linepithema_humile_v1.1   (Argentine ant)   3 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 1
Atta_cephalotes_v1.1 3 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 1
Lucilia_cuprina   (Australian sheep blowfly)   3 1
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 3 1
Drosophila_pseudoobscura_2.13 3 1
Drosophila_persimilis_1.3 4 2
Drosophila_suzukii 6 2
Drosophila_yakuba_1.3 3 1
Drosophila_simulans_1.3 3 1
Drosophila_sechellia_1.3 3 1
Drosophila_melanogaster_76_5   (Fruit fly)   3 1
Drosophila_erecta_1.3 3 1
Drosophila_ananassae_1.3 3 1
Drosophila_virilis_1.2 3 1
Drosophila_mojavensis_1.3 3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3 1
Anopheles_darlingi_22   (American malaria mosquito)   3 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 1
Tribolium_castaneum_3.0   (Red flour beetle)   3 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 1
Acyrthosiphon_pisum_   (Pea aphid)   3 1
Rhodnius_prolixus_22 3 1
Daphnia_pulex_   (Common water flea)   3 1
Strigamia_maritima_22 3 1
Sarcoptes_scabiei 4 2
Tetranychus_urticae_   (Two-spotted spider mite)   3 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 1
Pristionchus_pacificus_ 3 1
Onchocerca_volvulus_22 3 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 1
Caenorhabditis_japonica_ 3 1
Caenorhabditis_brenneri_ 6 2
Caenorhabditis_remanei_ 3 1
Caenorhabditis_elegans_76_235   (Roundworm)   3 1
Caenorhabditis_briggsae_2 3 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 1
Hydra_vulgaris 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   9 3
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3 1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   3 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3 1
Gorilla_gorilla_69_3.1   (Western gorilla)   3 1
Pongo_abelii_69_2   (Sumatran orangutan)   3 1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 1
Macaca_mulatta_69_1   (Rhesus monkey)   3 1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   6 2
Otolemur_garnettii_69_3   (Small-eared galago)   3 1
Microcebus_murinus_69_1   (Gray mouse lemur)   3 1
Rattus_norvegicus_69_3.4   (Norway rat)   3 1
Mus_musculus_69_38   (House mouse)   3 1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 1
Cavia_porcellus_69_3   (Domestic guinea pig)   3 1
Ochotona_princeps_69   (American pika)   3 1
Tupaia_belangeri_69   (Northern tree shrew)   3 1
Sus_scrofa_69_10.2   (Pig)   3 1
Bos_taurus_69_3.1   (Cattle)   3 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 1
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 1
Canis_familiaris_69_3.1   (Dog)   3 1
Felis_catus_69   (Domestic cat)   3 1
Equus_caballus_69_2   (Horse)   3 1
Myotis_lucifugus_69_2.0   (Little brown bat)   2 1
Pteropus_vampyrus_69_1   (Large flying fox)   3 1
Procavia_capensis_69_1   (Cape rock hyrax)   2 1
Loxodonta_africana_69_3   (African savanna elephant)   3 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3 1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 1
Meleagris_gallopavo_69_2   (Turkey)   3 1
Gallus_gallus_69_2   (Chicken)   3 1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 1
Anolis_carolinensis_69_2.0   (Green anole)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3 1
Gadus_morhua_69_1   (Atlantic cod)   3 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3 1
Takifugu_rubripes_69_4   (Torafugu)   3 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3 1
Oryzias_latipes_69_1   (Japanese medaka)   3 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3 1
Danio_rerio_69_9   (Zebrafish)   3 1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 1
Ciona_intestinalis_69   (Vase tunicate)   3 1
Drosophila_melanogaster_69_5   (Fruit fly)   3 1
Caenorhabditis_elegans_69_215   (Roundworm)   3 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   4 2
Homo_sapiens__(NCBI_version)   (Human)   3 1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 1
Heliconius_numata__(Incomplete) 2 1
Loa_loa_v3.3_(Request)   (Eye worm)   3 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 27 27
PDB_chains_(SCOP_1.75)_(PDB) 5 5
STRING_v9.0.5_(STRING) 143 52
NCBI_2017_08_genome 1246 460
Uniprot_2018_03_genome 1265 475
Protein_Data_Bank_(all_PDB_sequenc) 13 9

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