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Domain combinations for Aspartate receptor, ligand-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Aspartate receptor, ligand-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Monosiga_brevicollis_ 1 1
Clostridium_novyi_NT 1 1
Alistipes_finegoldii_DSM_17242 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Burkholderia_phytofirmans_PsJN 6 6
Burkholderia_phymatum_STM815 6 6
Burkholderia_xenovorans_LB400 8 8
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 2 2
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 2 2
Ralstonia_pickettii_12D 5 5
Ralstonia_solanacearum_CFBP2957 6 6
Burkholderia_sp._RPE64 2 2
Burkholderia_sp._CCGE1002 4 4
Burkholderia_thailandensis_E264 4 4
Burkholderia_pseudomallei_1106a 4 4
Burkholderia_mallei_SAVP1 3 3
Burkholderia_ambifaria_AMMD 4 4
Burkholderia_cenocepacia_HI2424 4 4
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_vietnamiensis_G4 5 5
Burkholderia_gladioli_BSR3 3 3
Burkholderia_glumae_BGR1 4 4
Herminiimonas_arsenicoxydans 1 1
Janthinobacterium_sp._Marseille 2 2
Herbaspirillum_seropedicae_SmR1 1 1
Pusillimonas_sp._T7-7 1 1
Bordetella_petrii_DSM_12804 3 3
Bordetella_avium_197N 5 5
Bordetella_pertussis_Tohama_I 5 5
Bordetella_parapertussis_12822 4 4
Bordetella_bronchiseptica_RB50 5 5
Achromobacter_xylosoxidans_A8 7 7
Achromobacter_xylosoxidans 9 9
Methylobacillus_flagellatus_KT 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Nitrobacter_hamburgensis_X14 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Idiomarina_loihiensis_L2TR 1 1
Shewanella_putrefaciens_CN-32 1 1
Chromohalobacter_salexigens_DSM_3043 2 2
Halomonas_elongata_DSM_2581 1 1
Photorhabdus_asymbiotica 2 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 2 2
Xenorhabdus_bovienii_SS-2004 2 2
Xenorhabdus_nematophila_ATCC_19061 2 2
Providencia_stuartii_MRSN_2154 3 3
Proteus_mirabilis_HI4320 4 4
Edwardsiella_ictaluri_93-146 6 6
Edwardsiella_tarda_EIB202 6 6
Rahnella_sp._Y9602 7 7
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 7 7
Yersinia_pseudotuberculosis_IP_31758 4 4
Yersinia_pestis_Pestoides_F 4 4
Yersinia_enterocolitica_subsp._enterocolitica_8081 6 6
Serratia_sp._AS12 3 3
Serratia_sp._ATCC_39006 7 7
Serratia_plymuthica_AS9 3 3
Serratia_proteamaculans_568 4 4
Dickeya_dadantii_Ech703 11 11
Dickeya_zeae_Ech1591 13 13
Pectobacterium_wasabiae_WPP163 10 10
Pectobacterium_sp._SCC3193 10 10
Pectobacterium_atrosepticum_SCRI1043 11 11
Pectobacterium_carotovorum_subsp._carotovorum_PC1 11 11
Pantoea_sp._At-9b 9 9
Pantoea_vagans_C9-1 7 7
Pantoea_ananatis_LMG_20103 8 8
Erwinia_tasmaniensis_Et1/99 7 7
Erwinia_sp._Ejp617 7 7
Erwinia_billingiae_Eb661 9 9
Erwinia_pyrifoliae_Ep1/96 7 7
Erwinia_amylovora_ATCC_49946 4 4
Cronobacter_turicensis_z3032 9 9
Cronobacter_sakazakii_ES15 9 9
Enterobacteriaceae_bacterium_strain_FGI_57 4 4
Shigella_sonnei_Ss046 3 3
Shigella_flexneri_5_str._8401 4 4
Shigella_dysenteriae_Sd197 1 1
Shigella_boydii_CDC_3083-94 3 3
Salmonella_bongori_NCTC_12419 4 4
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 4 4
Enterobacter_aerogenes_KCTC_2190 2 2
Escherichia_fergusonii_ATCC_35469 2 2
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 4 4
Enterobacter_sp._R4-368 12 12
Enterobacter_sp._638 9 9
Enterobacter_asburiae_LF7a 10 10
Enterobacter_cloacae_subsp._dissolvens_SDM 9 9
Citrobacter_rodentium_ICC168 4 4
Citrobacter_koseri_ATCC_BAA-895 6 6
Pseudomonas_sp._TKP 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_fulva_12-X 1 1

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Strains
Genome     Number   Proteins
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4 4
Alistipes_shahii_WAL_8301 1 1
Burkholderia_phenoliruptrix_BR3459a 6 6
Pandoraea_pnomenusa_3kgm 3 3
Ralstonia_pickettii_12J 4 4
Ralstonia_solanacearum_FQY_4 7 7
Ralstonia_solanacearum_Po82 6 6
Ralstonia_solanacearum_PSI07 7 7
Ralstonia_solanacearum_CMR15 6 6
Ralstonia_solanacearum_GMI1000 6 6
Burkholderia_sp._YI23 2 2
Burkholderia_sp._CCGE1003 8 8
Burkholderia_sp._CCGE1001 6 6
Burkholderia_sp._KJ006 5 5
Burkholderia_thailandensis_MSMB121 4 4
Burkholderia_pseudomallei_MSHR305 4 4
Burkholderia_pseudomallei_NCTC_13179 4 4
Burkholderia_pseudomallei_BPC006 4 4
Burkholderia_pseudomallei_1026b 4 4
Burkholderia_pseudomallei_MSHR346 2 2
Burkholderia_pseudomallei_668 4 4
Burkholderia_pseudomallei_1710b 4 4
Burkholderia_pseudomallei_K96243 4 4
Burkholderia_mallei_NCTC_10229 3 3
Burkholderia_mallei_NCTC_10247 2 2
Burkholderia_mallei_ATCC_23344 3 3
Burkholderia_lata 4 4
Burkholderia_ambifaria_MC40-6 4 4
Burkholderia_cenocepacia_MC0-3 5 5
Burkholderia_cenocepacia_AU_1054 4 4
Burkholderia_cenocepacia_J2315 3 3
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_cepacia_GG4 3 3
Bordetella_pertussis_CS 5 5
Bordetella_parapertussis_18323 5 5
Bordetella_parapertussis_Bpp5 2 2
Bordetella_bronchiseptica_MO149 6 6
Bordetella_bronchiseptica_253 6 6
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 7 7
Aeromonas_hydrophila_ML09-119 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_sp._W3-18-1 1 1
Shewanella_putrefaciens_200 1 1
Alcanivorax_dieselolei_B5 2 2
Proteus_mirabilis_BB2000 4 4
Morganella_morganii_subsp._morganii_KT 2 2
Edwardsiella_tarda_C07-087 6 6
Edwardsiella_tarda_FL6-60 6 6
Rahnella_aquatilis_HX2 7 7
Yersinia_pseudotuberculosis_PB1/+ 4 4
Yersinia_pseudotuberculosis_YPIII 3 3
Yersinia_pseudotuberculosis_IP_32953 4 4
Yersinia_pestis_biovar_Microtus_str._91001 3 3
Yersinia_pestis_A1122 3 3
Yersinia_pestis_Z176003 4 4
Yersinia_pestis_D182038 4 4
Yersinia_pestis_D106004 4 4
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 3 3
Yersinia_pestis_Nepal516 4 4
Yersinia_pestis_Antiqua 4 4
Yersinia_pestis_Angola 3 3
Yersinia_pestis_CO92 2 2
Yersinia_pestis_KIM10+ 3 3
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 5 5
Yersinia_enterocolitica_subsp._palearctica_Y11 5 5
Serratia_sp._AS13 3 3
Serratia_plymuthica_S13 3 3
Serratia_plymuthica_4Rx13 3 3
Serratia_marcescens_FGI94 3 3
Serratia_marcescens_WW4 5 5
Serratia_liquefaciens_ATCC_27592 4 4
Dickeya_dadantii_Ech586 14 14
Dickeya_dadantii_3937 14 14
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 9 9
Pantoea_ananatis_LMG_5342 8 8
Pantoea_ananatis_PA13 8 8
Pantoea_ananatis_AJ13355 8 8
Erwinia_pyrifoliae_DSM_12163 7 7
Erwinia_amylovora_CFBP1430 4 4
Cronobacter_sakazakii_CMCC_45402 9 9
Cronobacter_sakazakii_SP291 10 10
Cronobacter_sakazakii_ATCC_BAA-894 9 9
Shigella_sonnei_53G 4 4
Shigella_flexneri_2002017 4 4
Shigella_flexneri_2a_str._2457T 4 4
Shigella_flexneri_2a_str._301 4 4
Shigella_dysenteriae_1617 2 2
Shigella_boydii_Sb227 1 1
Salmonella_bongori_N268-08 4 4
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 3 3
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 4 4
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 4 4
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 4 4
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 4 4
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 4 4
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 4 4
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 4 4
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 4 4
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 4 4
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 2 2
Salmonella_enterica_serovar_Bovismorbificans_genomics 4 4
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 4 4
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 4 4
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 3 3
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 4 4
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 4 4
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 2 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 2 2
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 4 4
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 4 4
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 4 4
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 4 4
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 4 4
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 4 4
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 4 4
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 4 4
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 3 3
Enterobacter_aerogenes_EA1509E 2 2
Escherichia_coli_E24377A 4 4
Escherichia_coli_E._coli_PMV-1 2 2
Escherichia_coli_JJ1886 2 2
Escherichia_coli_LY180 4 4
Escherichia_coli_APEC_O78 4 4
Escherichia_coli_O7:K1_str._CE10 3 3
Escherichia_coli_O104:H4_str._2009EL-2050 4 4
Escherichia_coli_O104:H4_str._2009EL-2071 4 4
Escherichia_coli_O104:H4_str._2011C-3493 4 4
Escherichia_coli_NA114 2 2
Escherichia_coli_P12b 3 3
Escherichia_coli_str._'clone_D_i2' 2 2
Escherichia_coli_str._'clone_D_i14' 2 2
Escherichia_coli_UM146 2 2
Escherichia_coli_042 4 4
Escherichia_coli_Xuzhou21 4 4
Escherichia_coli_IHE3034 2 2
Escherichia_coli_UMNK88 4 4
Escherichia_coli_O83:H1_str._NRG_857C 2 2
Escherichia_coli_ABU_83972 2 2
Escherichia_coli_KO11FL 4 4
Escherichia_coli_KO11FL 4 4
Escherichia_coli_LF82 2 2
Escherichia_coli_ED1a 2 2
Escherichia_coli_IAI39 2 2
Escherichia_coli_UMN026 4 4
Escherichia_coli_55989 4 4
Escherichia_coli_S88 2 2
Escherichia_coli_IAI1 4 4
Escherichia_coli_W 4 4
Escherichia_coli_W 4 4
Escherichia_coli_DH1 4 4
Escherichia_coli_DH1 4 4
Escherichia_coli_ATCC_8739 4 4
Escherichia_coli_BL21(DE3) 4 4
Escherichia_coli_BL21(DE3) 4 4
Escherichia_coli_SMS-3-5 4 4
Escherichia_coli_SE15 2 2
Escherichia_coli_SE11 4 4
Escherichia_coli_APEC_O1 2 2
Escherichia_coli_O103:H2_str._12009 3 3
Escherichia_coli_UTI89 2 2
Escherichia_coli_536 2 2
Escherichia_coli_HS 4 4
Escherichia_coli_ETEC_H10407 4 4
Escherichia_coli_O55:H7_str._RM12579 3 3
Escherichia_coli_O55:H7_str._CB9615 4 4
Escherichia_coli_O26:H11_str._11368 4 4
Escherichia_coli_CFT073 2 2
Escherichia_coli_O111:H-_str._11128 4 4
Escherichia_coli_O127:H6_str._E2348/69 2 2
Escherichia_coli_O157:H7_str._TW14359 4 4
Escherichia_coli_O157:H7_str._EC4115 4 4
Escherichia_coli_O157:H7_str._Sakai 4 4
Escherichia_coli_O157:H7_str._EDL933 4 4
Escherichia_coli_str._K-12_substr._MDS42 1 1
Escherichia_coli_BW2952 4 4
Escherichia_coli_str._K-12_substr._MG1655 4 4
Escherichia_coli_str._K-12_substr._W3110 4 4
Escherichia_coli_str._K-12_substr._DH10B 3 3
Escherichia_coli_B_str._REL606 4 4
Enterobacter_cloacae_SCF1 6 6
Enterobacter_cloacae_EcWSU1 9 9
Enterobacter_cloacae_subsp._cloacae_ENHKU01 9 9
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 6 6
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 9 9
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 2 2
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_S16 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 42 42
STRING_v9.0.5_(STRING) 514 514
Uniprot_2018_03_genome 7654 7653
TargetDB__(Targets) 7 7
NCBI_2017_08_genome 85454 85453
Protein_Data_Bank_(all_PDB_sequenc) 23 23
PDB_chains_(SCOP_1.75)_(PDB) 4 4
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 57 57

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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