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Domain combinations for HLH, helix-loop-helix DNA-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a HLH, helix-loop-helix DNA-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   330 330
Pan_troglodytes_76_2.1.4   (Chimpanzee)   105 105
Gorilla_gorilla_76_3.1   (Western gorilla)   140 140
Pongo_abelii_76_2   (Sumatran orangutan)   96 96
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   101 101
Papio_anubis_76   (Olive baboon)   115 115
Macaca_mulatta_76_1   (Rhesus monkey)   151 151
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   195 195
Otolemur_garnettii_76_3   (Small-eared galago)   111 111
Microcebus_murinus_76_1   (Gray mouse lemur)   66 66
Rattus_norvegicus_76_5.0   (Norway rat)   123 123
Mus_musculus_76_38   (House mouse)   209 209
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   67 67
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   110 110
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   89 88
Cavia_porcellus_76_3   (Domestic guinea pig)   103 103
Oryctolagus_cuniculus_76_2   (Rabbit)   89 89
Ochotona_princeps_76   (American pika)   68 68
Tupaia_belangeri_76   (Northern tree shrew)   49 49
Sus_scrofa_76_10.2   (Pig)   115 115
Bos_taurus_76_3.1   (Cattle)   110 110
Ovis_aries_76_3.1   (Sheep)   102 102
Vicugna_pacos_76_1   (Alpaca)   39 39
Tursiops_truncatus_76_1   (Bottlenose dolphin)   87 87
Mustela_putorius_furo_76_1.0   (Domestic ferret)   94 94
Ailuropoda_melanoleuca_76_1   (Giant panda)   106 106
Canis_familiaris_76_3.1   (Dog)   122 122
Felis_catus_76_6.2   (Domestic cat)   88 88
Equus_caballus_76_2   (Horse)   90 90
Myotis_lucifugus_76_2.0   (Little brown bat)   83 83
Pteropus_vampyrus_76_1   (Large flying fox)   86 86
Sorex_araneus_76_1   (European shrew)   43 43
Erinaceus_europaeus_76   (Western European hedgehog)   55 55
Procavia_capensis_76_1   (Cape rock hyrax)   71 71
Loxodonta_africana_76_3   (African savanna elephant)   128 128
Echinops_telfairi_76   (Small Madagascar hedgehog)   58 58
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   114 114
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   38 38
Macropus_eugenii_76_1.0   (Tammar wallaby)   77 77
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   103 103
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   110 110
Ornithorhynchus_anatinus_76_5   (Platypus)   85 85
Saccoglossus_kowalevskii_v3.0 115 115
Petromyzon_marinus_76_7.0   (Sea lamprey)   54 54
Meleagris_gallopavo_76_2   (Turkey)   85 85
Gallus_gallus_76_4   (Chicken)   86 86
Anas_platyrhynchos_76_1.0   (Mallard)   67 67
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   88 88
Ficedula_albicollis_76_1.0   (Collared flycatcher)   84 84
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   93 93
Anolis_carolinensis_76_2.0   (Green anole)   93 93
Xenopus_laevis_   (African clawed frog)   382 382
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   131 131
Latimeria_chalumnae_76_1   (Coelacanth)   133 133
Lepisosteus_oculatus_76   (Spotted gar)   141 140
Gadus_morhua_76_1   (Atlantic cod)   145 145
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   144 144
Takifugu_rubripes_76_4   (Torafugu)   324 324
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   160 160
Oryzias_latipes_76_1   (Japanese medaka)   143 143
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   133 133
Poecilia_formosa_76   (Amazon molly)   144 144
Oreochromis_niloticus_76_1.0   (Nile tilapia)   161 161
Astyanax_mexicanus_76   (Mexican tetra)   140 140
Danio_rerio_76_9   (Zebrafish)   219 219
Oikopleura_dioica 26 26
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   49 49
Ciona_intestinalis_76   (Vase tunicate)   43 43
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   59 59
Adineta_vaga 88 88
Octopus_bimaculoides_280 62 62
Crassostrea_gigas_22   (Pacific oyster)   79 77
Lottia_gigantea_   (Owl limpet)   82 82
Helobdella_robusta_ 71 71
Capitella_sp._I_ 84 84
Danaus_plexippus_OGS1.0   (Monarch butterfly)   53 50
Heliconius_melpomene_   (Postman butterfly)   42 41
Bombyx_mori_   (Domestic silkworm)   39 36
Nasonia_vitripennis_   (Jewel wasp)   33 33
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   85 85
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   54 54
Linepithema_humile_v1.1   (Argentine ant)   55 55
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   48 48
Solenopsis_invicta_v.2.2.3   (Red fire ant)   39 39
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   51 51
Atta_cephalotes_v1.1 49 49
Camponotus_floridanus_v3.3   (Florida carpenter ant)   48 48
Lucilia_cuprina   (Australian sheep blowfly)   55 53
Drosophila_grimshawi_1.3 56 56
Drosophila_willistoni_1.3 55 55
Drosophila_pseudoobscura_2.13 57 57
Drosophila_persimilis_1.3 52 52
Drosophila_suzukii 55 51
Drosophila_yakuba_1.3 56 56
Drosophila_simulans_1.3 55 54
Drosophila_sechellia_1.3 53 53
Drosophila_melanogaster_76_5   (Fruit fly)   114 114
Drosophila_erecta_1.3 55 55
Drosophila_ananassae_1.3 56 56
Drosophila_virilis_1.2 56 56
Drosophila_mojavensis_1.3 56 56
Megaselia_scalaris_22 27 27
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   61 61
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   59 57
Anopheles_darlingi_22   (American malaria mosquito)   40 40
Anopheles_gambiae_49_3j   (African malaria mosquito)   47 47
Tribolium_castaneum_3.0   (Red flour beetle)   51 51
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   51 51
Acyrthosiphon_pisum_   (Pea aphid)   43 43
Rhodnius_prolixus_22 42 42
Daphnia_pulex_   (Common water flea)   52 52
Strigamia_maritima_22 59 59
Sarcoptes_scabiei 23 23
Tetranychus_urticae_   (Two-spotted spider mite)   50 50
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   47 47
Pristionchus_pacificus_ 21 20
Meloidogyne_incognita_   (Southern root-knot nematode)   32 32
Meloidogyne_hapla_ 16 16
Onchocerca_volvulus_22 33 33
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   52 52
Caenorhabditis_japonica_ 31 31
Caenorhabditis_brenneri_ 58 53
Caenorhabditis_remanei_ 60 57
Caenorhabditis_elegans_76_235   (Roundworm)   60 57
Caenorhabditis_briggsae_2 42 41
Trichinella_spiralis_22 32 32
Hymenolepis_microstoma_ 34 34
Echinococcus_multilocularis_ 35 35
Echinococcus_granulosus_ 31 31
Taenia_solium_   (Pork tapeworm)   34 33
Schistosoma_mansoni_ 40 40
Mnemiopsis_leidyi   (Sea walnut)   22 22
Thelohanellus_kitauei 4 4
Acropora_digitifera_v1.0 51 51
Nematostella_vectensis_1.0   (Starlet sea anemone)   75 75
Hydra_vulgaris 22 22
Amphimedon_queenslandica 20 20
Trichoplax_adhaerens_ 27 27
Proterospongia_sp._ATCC_50818_ 5 5
Monosiga_brevicollis_ 14 14
Sphaeroforma_arctica_JP610_ 36 35
Capsaspora_owczarzaki_ATCC_30864_ 33 33
Conidiobolus_coronatus_NRRL28638_v1.0 12 12
Mortierella_verticillata_NRRL_6337_ 26 26
Phycomyces_blakesleeanus_ 38 38
Rhizopus_oryzae_RA_99-880_ 53 53
Mucor_circinelloides_ 43 43
Rhizomucor_miehei_CAU432_ 32 32
Malassezia_globosa_CBS_7966_ 14 14
Sporisorium_reilianum_22 12 12
Ustilago_maydis_ 12 12
Mixia_osmundae_IAM_14324_v1.0 9 9
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 7 7
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7 7
Melampsora_laricis-populina_ 7 7
Rhodotorula_graminis_WP1_v1.0 7 7
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 9 9
Wallemia_sebi_v1.0 7 7
Sphaerobolus_stellatus_v1.0 13 13
Piloderma_croceum_F_1598_v1.0 10 10
Serpula_lacrymans_var._lacrymans_S7.9_ 9 9
Coniophora_puteana 10 10
Hydnomerulius_pinastri_v2.0 13 13
Paxillus_rubicundulus_Ve08.2h10_v1.0 11 11
Pisolithus_microcarpus_441_v1.0 16 16
Pisolithus_tinctorius_Marx_270_v1.0 16 16
Scleroderma_citrinum_Foug_A_v1.0 15 15
Coprinopsis_cinerea_okayama7_130_v3 10 10
Pleurotus_ostreatus_   (Oyster mushroom)   10 10
Amanita_thiersii_Skay4041_v1.0 10 10
Amanita_muscaria_Koide_v1.0   (Fly agaric)   14 14
Galerina_marginata_v1.0 11 11
Hebeloma_cylindrosporum_h7_v2.0 12 12
Laccaria_bicolor_S238N-H82_ 20 20
Agaricus_bisporus_var._bisporus_ 9 9
Schizophyllum_commune_ 11 11
Stereum_hirsutum_FP-91666_SS1__v1.0 12 12
Heterobasidion_annosum_ 8 8
Gloeophyllum_trabeumv1.0 12 12
Punctularia_strigosozonata_v1.0 11 11
Sebacina_vermifera_MAFF_305830_v1.0 11 11
Fomitiporia_mediterranea_v1.0 12 12
Tulasnella_calospora_AL13/4D_v1.0 10 10
Postia_placenta_ 16 16
Wolfiporia_cocos_MD-104_SS10__v1.0 11 11
Fomitopsis_pinicolav1.0 19 19
Fomitopsis_pinicola_FP-58527_SS1_v3.0 16 16
Phanerochaete_chrysosporium_RP-78_2.1 11 11
Dichomitus_squalens 10 10
Trametes_versicolor_v1.0 11 11
Tremella_mesenterica_   (Witches' butter)   9 9
Daldinia_eschscholzii_EC12_v1.0 10 10
Apiospora_montagnei_NRRL_25634_v1.0 13 13
Magnaporthe_poae_ATCC_64411_22 9 9
Magnaporthe_grisea_70-15_ 10 10
Podospora_anserina_ 16 16
Sporotrichum_thermophile_ATCC_42464_ 12 12
Thielavia_terrestris_NRRL_8126_ 13 13
Chaetomium_globosum_CBS_148.51_ 11 11
Neurospora_tetrasperma_ 14 14
Neurospora_discreta_FGSC_8579_ 14 14
Neurospora_crassa_OR74A_ 15 15
Cryphonectria_parasitica_   (Chestnut blight fungus)   10 10
Verticillium_albo-atrum_VaMs.102_ 6 6
Verticillium_dahliae_VdLs.17_ 12 12
Acremonium_alcalophilumv_1.0 9 9
Glomerella_graminicola_22 11 11
Fusarium_graminearum_ 16 16
Nectria_haematococca_mpVI_ 12 12
Fusarium_oxysporum_f._sp._lycopersici_4286_ 58 58
Fusarium_verticillioides_7600_ 15 15
Trichoderma_asperellum_CBS_433.97_v1.0 12 12
Trichoderma_atroviride_ 10 10
Trichoderma_citrinoviride_v1.0 9 9
Trichoderma_reesei_1.2 9 9
Trichoderma_virens_Gv29-8_ 9 9
Trichoderma_longibrachiatum_ATCC_18648_v1.0 10 10
Trichoderma_harzianum_CBS_226.95_v1.0 11 11
Amorphotheca_resinae_v1.0   (Creosote fungus)   10 10
Botrytis_cinerea_B05.10_ 9 9
Sclerotinia_sclerotiorum_ 9 9
Blumeria_graminis_22 7 7
Didymella_exigua_CBS_183.55_v1.0 14 14
Leptosphaeria_maculans_22 9 9
Setosphaeria_turcica_v1.0 14 14
Cochliobolus_miyabeanus_ATCC_44560_v1.0 15 15
Cochliobolus_victoriae_FI3_v1.0 15 15
Cochliobolus_carbonum_26-R-13_v1.0 13 13
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   12 12
Alternaria_brassicicola_ 11 11
Cochliobolus_lunatus_m118_v2.0 14 14
Pyrenophora_teres_f._teres_22 12 12
Pyrenophora_tritici-repentis_ 11 11
Stagonospora_nodorum_ 12 12
Mycosphaerella_graminicola_IPO323_ 9 9
Zasmidium_cellare_ATCC_36951_v1.0 14 14
Dothistroma_septosporum 14 14
Septoria_musiva_v1.0 13 13
Mycosphaerella_fijiensis_CIRAD86_ 12 12
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 15 15
Paracoccidioides_brasiliensis_Pb18_ 6 6
Coccidioides_posadasii_RMSCC_3488_ 8 8
Coccidioides_immitis_RS_ 8 8
Ajellomyces_dermatitidis_SLH14081_ 8 8
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5 5
Microsporum_canis_CBS_113480_ 8 8
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 8 8
Arthroderma_benhamiae_CBS_112371_ 8 8
Trichophyton_tonsurans_CBS_112818_ 7 7
Trichophyton_rubrum_CBS_118892_ 8 8
Uncinocarpus_reesii_1704_ 7 7
Aspergillus_zonatus_v1.0 11 11
Penicillium_chrysogenum_Wisconsin_54-1255_ 10 10
Penicillium_chrysogenum_v1.0 10 10
Aspergillus_acidus_v1.0 9 9
Aspergillus_fumigatus_Af293 9 9
Aspergillus_brasiliensis_v1.0 9 9
Aspergillus_nidulans_FGSC_A4_ 13 13
Aspergillus_sydowii_v1.0 14 14
Aspergillus_versicolor_v1.0 15 15
Aspergillus_glaucus 9 9
Aspergillus_carbonarius_ITEM_5010_ 9 9
Neosartorya_fischeri_NRRL_181_ 10 10
Aspergillus_terreus_NIH2624_ 10 10
Aspergillus_tubingensis_v1.0 9 9
Aspergillus_wentii_v1.0 10 10
Aspergillus_oryzae_RIB40_ 10 10
Aspergillus_niger_22 9 9
Aspergillus_niger_ATCC_1015_ 5 5
Aspergillus_flavus_NRRL3357_ 12 12
Aspergillus_clavatus_NRRL_1_ 9 9
Penicillium_marneffei_ATCC_18224_ 10 10
Tuber_melanosporum_Mel28_22 8 8
Tuber_melanosporum_Vittad_   (Perigord truffle)   8 8
Hansenula_polymorpha_v2.0 9 9
Dekkera_bruxellensis_CBS_2499_v2.0 10 10
Pichia_membranifaciensv1.0 9 9
Candida_tanzawaensis_NRRL_Y-17324__v1.0 9 9
Candida_dubliniensis_CD36_ 9 9
Candida_tropicalis_MYA-3404_ 7 7
Candida_parapsilosis_ 7 7
Candida_albicans_SC5314 9 9
Lodderomyces_elongisporus_NRRL_YB-4239_ 7 7
Babjeviella_inositovora_NRRL_Y-12698_v1.0 10 10
Pichia_stipitis_CBS_6054_ 8 8
Candida_guilliermondii_ATCC_6260_ 8 8
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 9 9
Debaromyces_hansenii 8 8
Wickerhamomyces_anomalus 10 10
Pichia_pastoris_GS115_ 10 10
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6 6
Yarrowia_lipolytica_CLIB122 9 9
Candida_lusitaniae_ATCC_42720_ 8 8
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 7 7
Vanderwaltozyma_polyspora_DSM_70294_ 9 9
Candida_glabrata_CBS138 9 9
Kluyveromyces_thermotolerans_CBS_6340 8 8
Lachancea_kluyveri_ 9 9
Kluyveromyces_waltii 8 8
Ashbya_gossypii_ATCC_10895_ 8 8
Zygosaccharomyces_rouxii_ 8 8
Saccharomyces_mikatae_MIT 8 8
Saccharomyces_paradoxus_MIT 8 8
Saccharomyces_cerevisiae_76   (Baker's yeast)   8 8
Saccharomyces_bayanus_MIT 7 7
Kluyveromyces_lactis 9 9
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 4 4
Schizosaccharomyces_pombe   (Fission yeast)   4 4
Catenaria_anguillulae_PL171_v1.0 14 14
Allomyces_macrogynus_ATCC_38327_ 25 25
Spizellomyces_punctatus_DAOM_BR117_ 12 12
Selaginella_moellendorffii_ 95 94
Pinus_taeda   (Loblolly pine)   185 183
Picea_abies   (Norway spruce)   134 132
Eucalyptus_grandis_v201   (Rose gum)   187 187
Theobroma_cacao_B97-61/B2_v1   (Cacao)   133 133
Gossypium_raimondii_v221 459 459
Citrus_clementina_v165 173 173
Citrus_sinensis_v154   (Sweet orange)   206 206
Thellungiella_halophila_v173 181 181
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   278 277
Capsella_rubella_v183 172 172
Arabidopsis_lyrata_   (Lyrate rockcress)   164 161
Arabidopsis_thaliana_10   (Thale cress)   238 238
Carica_papaya_   (Papaya)   111 111
Medicago_truncatula_   (Barrel medic)   267 267
Phaseolus_vulgaris_v186   (French bean)   207 207
Glycine_max_v109   (Soybean)   414 414
Cucumis_sativus_v122   (Cucumber)   207 207
Fragaria_vesca_   (Wild strawberry)   120 119
Malus_domestica_v196   (Apple)   275 273
Prunus_persica_v139   (Peach)   137 137
Linum_usitatissimum_v200   (Flax)   201 201
Manihot_esculenta_v147   (Cassava)   212 212
Populus_trichocarpa_v156   (Black cottonwood)   243 243
Vitis_vinifera_   (Wine grape)   123 123
Mimulus_guttatus_v140   (Spotted monkey flower)   144 144
Solanum_lycopersicum_v.2.3   (Tomato)   172 172
Solanum_tuberosum_   (Potato)   229 229
Actinidia_chinensis_Hongyang_ 197 196
Aquilegia_coerulea_v195 188 188
Triticum_urartu_22 118 118
Triticum_aestivum_22   (Bread wheat)   346 346
Aegilops_tauschii_22 148 148
Brachypodium_distachyon_   (Stiff brome)   172 172
Oryza_barthii_22   (African wild rice)   196 193
Oryza_meridionalis_22 177 174
Oryza_glumaepatula_22 227 226
Oryza_glaberrima   (African rice)   154 154
Oryza_punctata_22 213 211
Oryza_nivara_22 220 220
Oryza_brachyantha_22   (Malo sina)   154 153
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   241 241
Oryza_sativa_v193   (Rice)   239 239
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   182 181
Panicum_virgatum_v202   (Switchgrass)   328 328
Setaria_italica_v164   (Foxtail millet)   211 211
Zea_mays_subsp._mays_   (Maize)   326 326
Zea_mays_v181   (Maize)   347 347
Sorghum_bicolor_   (Sorghum)   172 172
Musa_balbisiana   (Balbis banana)   322 319
Musa_acuminata_22   (Wild Malaysian banana)   321 321
Amborella_trichopoda_22 86 86
Physcomitrella_patens 108 108
Coccomyxa_subellipsoidea_sp._C-169_v2 6 6
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 6 6
Volvox_carteri_f._nagariensis_ 3 3
Volvox_carteri_v199 4 4
Chlamydomonas_reinhardtii_4.0 8 8
Ostreococcus_sp._RCC809_ 4 4
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 3 3
Thecamonas_trahens_ATCC_50062_ 8 8
Bigelowiella_natans_CCMP2755_22 5 5
Cyanophora_paradoxa_ 7 7
Ectocarpus_siliculosus 3 3
Albugo_laibachii_22 4 4
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_arrhenomanes_ATCC_12531_22 4 4
Pythium_ultimum_v1.7-2 4 4
Pythium_aphanidermatum_DAOM_BR444_22 4 4
Pythium_irregulare_DAOM_BR486_22 5 5
Pythium_vexans_DAOM_BR484_22 5 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   6 6
Phytophthora_sojae_1.1 6 6
Phytophthora_infestans_T30-4_ 7 7
Phytophthora_capsici_ 5 5
Hyaloperonospora_arabidopsidis_22 5 5
Phaeodactylum_tricornutumCCAP_1055/1 4 4
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 5 5
Guillardia_theta_CCMP2712_v1.0_ 16 13
Helicobacter_mustelae_12198 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   247 247
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   90 90
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   51 51
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   34 34
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   55 52
Cryptococcus_neoformans_var._grubii_H99_ 9 9
Cryptococcus_neoformans_B-3501A_ 8 8
Cryptococcus_neoformans_JEC21_ 8 8
Paracoccidioides_brasiliensis_Pb01_ 7 7
Paracoccidioides_brasiliensis_Pb03_ 7 7
Coccidioides_posadasii_str._Silveira_ 8 8
Coccidioides_immitis_RMSCC_3703_ 6 6
Coccidioides_immitis_RMSCC_2394_ 8 8
Coccidioides_immitis_H538.4_ 8 8
Ajellomyces_dermatitidis_ER-3_ 8 8
Histoplasma_capsulatum_H143 6 6
Histoplasma_capsulatum_H88 8 8
Histoplasma_capsulatum_G186AR 7 7
Aspergillus_fumigatus_A1163_ 9 9
Candida_albicans_WO-1_ 7 7
Saccharomyces_cerevisiae_UC5 8 8
Saccharomyces_cerevisiae_PW5 8 8
Saccharomyces_cerevisiae_FL100 6 6
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 5 5
Saccharomyces_cerevisiae_CBS7960 8 8
Saccharomyces_cerevisiae_YJM269 7 7
Saccharomyces_cerevisiae_T7 8 8
Saccharomyces_cerevisiae_FostersB 8 8
Saccharomyces_cerevisiae_FostersO 7 7
Saccharomyces_cerevisiae_VL3 8 8
Saccharomyces_cerevisiae_Vin13 7 7
Saccharomyces_cerevisiae_LalvinQA23 6 6
Saccharomyces_cerevisiae_AWRI796 7 7
Saccharomyces_cerevisiae_Sigma1278b 8 8
Saccharomyces_cerevisiae_W303 8 8
Saccharomyces_cerevisiae_JAY291 8 8
Saccharomyces_cerevisiae_AWRI1631 6 6
Saccharomyces_cerevisiae_YPS163 4 4
Saccharomyces_cerevisiae_M22 2 2
Saccharomyces_cerevisiae_T73 3 3
Saccharomyces_cerevisiae_CLIB215 5 5
Saccharomyces_cerevisiae_Y10 4 4
Saccharomyces_cerevisiae_YJM789_ 8 8
Saccharomyces_cerevisiae_YJM789 8 8
Saccharomyces_cerevisiae_RM11-1a 8 8
Saccharomyces_cerevisiae_RM11-1a_ 7 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   8 8
Schizosaccharomyces_pombe_972h-_ 4 4
Batrachochytrium_dendrobatidis_JEL423_ 10 10
Batrachochytrium_dendrobatidis_JAM81_ 10 10
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   126 126
Hordeum_vulgare_22   (Domesticated barley)   303 303
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   182 182
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_CbuG_Q212 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   115 115
Pan_troglodytes_69_2.1.4   (Chimpanzee)   100 100
Gorilla_gorilla_69_3.1   (Western gorilla)   102 102
Pongo_abelii_69_2   (Sumatran orangutan)   96 96
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   96 96
Macaca_mulatta_69_1   (Rhesus monkey)   103 103
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   101 101
Otolemur_garnettii_69_3   (Small-eared galago)   109 109
Microcebus_murinus_69_1   (Gray mouse lemur)   66 66
Rattus_norvegicus_69_3.4   (Norway rat)   110 110
Mus_musculus_69_38   (House mouse)   109 109
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   67 67
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   104 104
Cavia_porcellus_69_3   (Domestic guinea pig)   98 98
Oryctolagus_cuniculus_69_2   (Rabbit)   84 84
Ochotona_princeps_69   (American pika)   68 68
Tupaia_belangeri_69   (Northern tree shrew)   49 49
Sus_scrofa_69_10.2   (Pig)   96 96
Bos_taurus_69_3.1   (Cattle)   104 104
Vicugna_pacos_69_1   (Alpaca)   39 39
Tursiops_truncatus_69_1   (Bottlenose dolphin)   87 87
Mustela_putorius_furo_69_1.0   (Domestic ferret)   93 93
Ailuropoda_melanoleuca_69_1   (Giant panda)   97 97
Canis_familiaris_69_3.1   (Dog)   99 99
Felis_catus_69   (Domestic cat)   48 48
Equus_caballus_69_2   (Horse)   83 83
Myotis_lucifugus_69_2.0   (Little brown bat)   83 83
Pteropus_vampyrus_69_1   (Large flying fox)   86 86
Sorex_araneus_69_1   (European shrew)   43 43
Erinaceus_europaeus_69   (Western European hedgehog)   55 55
Procavia_capensis_69_1   (Cape rock hyrax)   71 71
Loxodonta_africana_69_3   (African savanna elephant)   97 97
Echinops_telfairi_69   (Small Madagascar hedgehog)   58 58
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   53 53
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   38 38
Macropus_eugenii_69_1.0   (Tammar wallaby)   77 77
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   89 89
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   108 108
Ornithorhynchus_anatinus_69_5   (Platypus)   76 76
Petromyzon_marinus_69_7.0   (Sea lamprey)   46 46
Meleagris_gallopavo_69_2   (Turkey)   67 67
Gallus_gallus_69_2   (Chicken)   75 75
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   84 84
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   81 81
Anolis_carolinensis_69_2.0   (Green anole)   89 89
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   103 103
Latimeria_chalumnae_69_1   (Coelacanth)   114 114
Gadus_morhua_69_1   (Atlantic cod)   135 135
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   127 127
Takifugu_rubripes_69_4   (Torafugu)   137 137
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   136 136
Oryzias_latipes_69_1   (Japanese medaka)   121 121
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   133 133
Oreochromis_niloticus_69_1.0   (Nile tilapia)   138 138
Danio_rerio_69_9   (Zebrafish)   146 146
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   42 42
Ciona_intestinalis_69   (Vase tunicate)   43 43
Drosophila_melanogaster_69_5   (Fruit fly)   57 57
Caenorhabditis_elegans_69_215   (Roundworm)   41 38
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   8 8
Arabidopsis_thaliana_10   (Thale cress)   163 163

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   344 344
Homo_sapiens__(NCBI_version)   (Human)   171 171
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   109 109
Heliconius_numata__(Incomplete) 5 5
Loa_loa_v3.3_(Request)   (Eye worm)   34 34
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   30 30
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   33 33
Moniliophthora_perniciosa_FA553__(Genome_survey) 8 8
Picea_sitchensis__(Incomplete)   (Sitka spruce)   13 13
Lotus_japonicus__(Early_assembly) 123 123
Malus_x_domestica_(Duplicate)   (Apple)   275 273
Ricinus_communis__(Early_assembly)   (Castor bean)   129 129
Nicotiana_benthamiana_0.4.4_(Early_draft) 286 282
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   171 171
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   172 172
Phoenix_dactylifera__(Early_draft)   (Date palm)   82 82
NCBI_viral_sequences_(Viral) 3 3
TargetDB__(Targets) 204 204
UniProt__viral_sequences_(Viral) 18 18
STRING_v9.0.5_(STRING) 5692 5671
PDB_chains_(SCOP_1.75)_(PDB) 13 13
Protein_Data_Bank_(all_PDB_sequenc) 100 100
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 175 175
Uniprot_2018_03_genome 65201 65023
NCBI_2017_08_genome 80672 80606

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