Domain combinations for Retrovirus capsid protein, N-terminal core domain superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a Retrovirus capsid protein, N-terminal core domain domain in that genome.

Complete genomes

Genome		Number	Proteins
Gorilla_gorilla_76_3.1	(Western gorilla)	1	1
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	1	1
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	30	30
Cavia_porcellus_76_3	(Domestic guinea pig)	11	11
Oryctolagus_cuniculus_76_2	(Rabbit)	2	2
Sus_scrofa_76_10.2	(Pig)	16	16
Ovis_aries_76_3.1	(Sheep)	53	53
Mustela_putorius_furo_76_1.0	(Domestic ferret)	2	2
Felis_catus_76_6.2	(Domestic cat)	73	73
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	16	16
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	32	32
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	103	103
Ornithorhynchus_anatinus_76_5	(Platypus)	1	1
Gallus_gallus_76_4	(Chicken)	4	4
Anas_platyrhynchos_76_1.0	(Mallard)	1	1
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	1	1
Ficedula_albicollis_76_1.0	(Collared flycatcher)	2	2
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	2	2
Anolis_carolinensis_76_2.0	(Green anole)	16	16
Brugia_malayi_WS250	(Agent of lymphatic filariasis)	1	1
Trypanosoma_congolense_2.4		4	4

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Longest transcript per gene

Genome		Number	Proteins
Gorilla_gorilla_69_3.1	(Western gorilla)	1	1
Cavia_porcellus_69_3	(Domestic guinea pig)	11	11
Sus_scrofa_69_10.2	(Pig)	16	16
Mustela_putorius_furo_69_1.0	(Domestic ferret)	2	2
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	30	30
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	103	103
Ornithorhynchus_anatinus_69_5	(Platypus)	1	1
Gallus_gallus_69_2	(Chicken)	1	1
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	1	1
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	2	2
Anolis_carolinensis_69_2.0	(Green anole)	3	3

Others

Genome		Number	Proteins
STRING_v9.0.5_(STRING)		54	54
NCBI_viral_sequences_(Viral)		58	58
NCBI_2017_08_genome		1881	1863
Protein_Data_Bank_(all_PDB_sequenc)		3127	3127
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		5884	5884
Protozoadb_2010_08_(Protozoadb)		1	1
UniProt__viral_sequences_(Viral)		32297	32292
Uniprot_2018_03_genome		71776	71770
PDB_chains_(SCOP_1.75)_(PDB)		19	19

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