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Domain combinations for Lipovitellin-phosvitin complex, superhelical domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Lipovitellin-phosvitin complex, superhelical domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   8 8
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_76_3.1   (Western gorilla)   4 4
Pongo_abelii_76_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2 2
Papio_anubis_76   (Olive baboon)   2 2
Macaca_mulatta_76_1   (Rhesus monkey)   2 2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6 6
Otolemur_garnettii_76_3   (Small-eared galago)   2 2
Microcebus_murinus_76_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   3 3
Mus_musculus_76_38   (House mouse)   4 4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4 4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2 2
Cavia_porcellus_76_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_76_2   (Rabbit)   2 2
Ochotona_princeps_76   (American pika)   2 2
Tupaia_belangeri_76   (Northern tree shrew)   1 1
Sus_scrofa_76_10.2   (Pig)   5 5
Bos_taurus_76_3.1   (Cattle)   2 2
Ovis_aries_76_3.1   (Sheep)   4 4
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   3 3
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   2 2
Equus_caballus_76_2   (Horse)   6 6
Myotis_lucifugus_76_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_76_1   (Large flying fox)   2 2
Sorex_araneus_76_1   (European shrew)   2 2
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   6 6
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3 3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   3 3
Saccoglossus_kowalevskii_v3.0 18 18
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   10 10
Gallus_gallus_76_4   (Chicken)   7 7
Anas_platyrhynchos_76_1.0   (Mallard)   5 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7 7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   5 5
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   10 10
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_76_1   (Coelacanth)   9 9
Lepisosteus_oculatus_76   (Spotted gar)   8 8
Gadus_morhua_76_1   (Atlantic cod)   22 22
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   11 11
Takifugu_rubripes_76_4   (Torafugu)   17 17
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   11 11
Oryzias_latipes_76_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6 6
Poecilia_formosa_76   (Amazon molly)   4 4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   8 8
Astyanax_mexicanus_76   (Mexican tetra)   9 9
Danio_rerio_76_9   (Zebrafish)   22 22
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7 7
Adineta_vaga 1 1
Octopus_bimaculoides_280 13 13
Crassostrea_gigas_22   (Pacific oyster)   12 12
Lottia_gigantea_   (Owl limpet)   5 5
Helobdella_robusta_ 3 3
Capitella_sp._I_ 7 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 8
Heliconius_melpomene_   (Postman butterfly)   4 4
Bombyx_mori_   (Domestic silkworm)   5 5
Nasonia_vitripennis_   (Jewel wasp)   7 7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   13 13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 6
Linepithema_humile_v1.1   (Argentine ant)   8 8
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7 6
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7 7
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 9
Atta_cephalotes_v1.1 8 8
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6 6
Lucilia_cuprina   (Australian sheep blowfly)   4 4
Drosophila_grimshawi_1.3 5 5
Drosophila_willistoni_1.3 4 4
Drosophila_pseudoobscura_2.13 4 4
Drosophila_persimilis_1.3 4 4
Drosophila_suzukii 4 4
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 4 4
Drosophila_sechellia_1.3 4 4
Drosophila_melanogaster_76_5   (Fruit fly)   4 4
Drosophila_erecta_1.3 4 4
Drosophila_ananassae_1.3 6 6
Drosophila_virilis_1.2 5 5
Drosophila_mojavensis_1.3 4 4
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   10 10
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9 9
Anopheles_darlingi_22   (American malaria mosquito)   7 7
Anopheles_gambiae_49_3j   (African malaria mosquito)   7 7
Tribolium_castaneum_3.0   (Red flour beetle)   8 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 5
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 5 5
Daphnia_pulex_   (Common water flea)   19 19
Strigamia_maritima_22 6 6
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   12 12
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   12 12
Pristionchus_pacificus_ 9 9
Meloidogyne_incognita_   (Southern root-knot nematode)   5 5
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 6 6
Caenorhabditis_brenneri_ 5 5
Caenorhabditis_remanei_ 7 7
Caenorhabditis_elegans_76_235   (Roundworm)   8 8
Caenorhabditis_briggsae_2 5 5
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 3 3
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 2 2
Monosiga_brevicollis_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Pisolithus_microcarpus_441_v1.0 1 1
Schizophyllum_commune_ 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Entamoeba_dispar_1.2 1 1
Entamoeba_histolytica_1 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1 1
Malus_domestica_v196   (Apple)   1 1
Prunus_persica_v139   (Peach)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Oryza_punctata_22 2 2
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Cyanophora_paradoxa_ 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Paramecium_tetraurelia_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 1 1
Nostoc_sp._PCC_7107 1 1
Kineococcus_radiotolerans_SRS30216 1 1
Amycolatopsis_mediterranei_U32 1 1
Salinispora_arenicola_CNS-205 1 1
Herpetosiphon_aurantiacus_DSM_785 3 3
Dyadobacter_fermentans_DSM_18053 1 1
Maribacter_sp._HTCC2170 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Rhodopirellula_baltica_SH_1 1 1
Opitutus_terrae_PB90-1 1 1
Treponema_azotonutricium_ZAS-9 1 1
Treponema_primitia_ZAS-2 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Desulfobacterium_autotrophicum_HRM2 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 3 3
Myxococcus_fulvus_HW-1 2 2
Ralstonia_solanacearum_CFBP2957 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_putida_F1 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Thermococcus_sp._4557 1 1
Pyrococcus_yayanosii_CH1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7 7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6 6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   8 8
Crinalium_epipsammum_PCC_9333 1 1
Cyanothece_sp._PCC_7822 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Enterococcus_mundtii_QU_25 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Myxococcus_stipitatus_DSM_14675 3 3
Ralstonia_solanacearum_Po82 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   2 2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_69_3.1   (Western gorilla)   3 3
Pongo_abelii_69_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2 2
Macaca_mulatta_69_1   (Rhesus monkey)   2 2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2 2
Otolemur_garnettii_69_3   (Small-eared galago)   2 2
Microcebus_murinus_69_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_69_3.4   (Norway rat)   2 2
Mus_musculus_69_38   (House mouse)   2 2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_69_2   (Rabbit)   2 2
Ochotona_princeps_69   (American pika)   2 2
Tupaia_belangeri_69   (Northern tree shrew)   1 1
Sus_scrofa_69_10.2   (Pig)   4 4
Bos_taurus_69_3.1   (Cattle)   2 2
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 3
Canis_familiaris_69_3.1   (Dog)   2 2
Felis_catus_69   (Domestic cat)   1 1
Equus_caballus_69_2   (Horse)   3 3
Myotis_lucifugus_69_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_69_1   (Large flying fox)   2 2
Sorex_araneus_69_1   (European shrew)   2 2
Erinaceus_europaeus_69   (Western European hedgehog)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   2 2
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   6 6
Gallus_gallus_69_2   (Chicken)   8 8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5 5
Anolis_carolinensis_69_2.0   (Green anole)   5 5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_69_1   (Coelacanth)   7 7
Gadus_morhua_69_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6 6
Takifugu_rubripes_69_4   (Torafugu)   5 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   6 6
Oryzias_latipes_69_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6 6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7 7
Danio_rerio_69_9   (Zebrafish)   14 14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   6 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   6 6
Homo_sapiens__(NCBI_version)   (Human)   2 2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2 2
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Malus_x_domestica_(Duplicate)   (Apple)   1 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
NCBI_plasmid_sequences_(Plasmids) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 1 1
NCBI_viral_sequences_(Viral) 1 1
STRING_v9.0.5_(STRING) 278 278
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3 3
NCBI_2017_08_genome 3050 3032
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Uniprot_2018_03_genome 4327 4297
Protozoadb_2010_08_(Protozoadb) 6 6
TargetDB__(Targets) 7 7

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