Domain combinations for Nuclear receptor ligand-binding domain superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a Nuclear receptor ligand-binding domain domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	249	248
Pan_troglodytes_76_2.1.4	(Chimpanzee)	52	52
Gorilla_gorilla_76_3.1	(Western gorilla)	72	72
Pongo_abelii_76_2	(Sumatran orangutan)	51	51
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	57	57
Papio_anubis_76	(Olive baboon)	52	52
Macaca_mulatta_76_1	(Rhesus monkey)	103	102
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	137	137
Otolemur_garnettii_76_3	(Small-eared galago)	51	51
Microcebus_murinus_76_1	(Gray mouse lemur)	49	43
Rattus_norvegicus_76_5.0	(Norway rat)	59	59
Mus_musculus_76_38	(House mouse)	132	132
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	45	43
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	48	48
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	62	59
Cavia_porcellus_76_3	(Domestic guinea pig)	55	54
Oryctolagus_cuniculus_76_2	(Rabbit)	49	49
Ochotona_princeps_76	(American pika)	48	43
Tupaia_belangeri_76	(Northern tree shrew)	50	42
Sus_scrofa_76_10.2	(Pig)	62	62
Bos_taurus_76_3.1	(Cattle)	54	54
Ovis_aries_76_3.1	(Sheep)	51	51
Vicugna_pacos_76_1	(Alpaca)	32	30
Tursiops_truncatus_76_1	(Bottlenose dolphin)	49	48
Mustela_putorius_furo_76_1.0	(Domestic ferret)	50	50
Ailuropoda_melanoleuca_76_1	(Giant panda)	55	55
Canis_familiaris_76_3.1	(Dog)	56	56
Felis_catus_76_6.2	(Domestic cat)	54	54
Equus_caballus_76_2	(Horse)	53	53
Myotis_lucifugus_76_2.0	(Little brown bat)	49	49
Pteropus_vampyrus_76_1	(Large flying fox)	50	49
Sorex_araneus_76_1	(European shrew)	36	32
Erinaceus_europaeus_76	(Western European hedgehog)	51	40
Procavia_capensis_76_1	(Cape rock hyrax)	44	44
Loxodonta_africana_76_3	(African savanna elephant)	66	66
Echinops_telfairi_76	(Small Madagascar hedgehog)	47	44
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	60	60
Choloepus_hoffmanni_76_1	(Hoffmann's two-fingered sloth)	40	37
Macropus_eugenii_76_1.0	(Tammar wallaby)	52	48
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	60	60
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	48	48
Ornithorhynchus_anatinus_76_5	(Platypus)	46	46
Saccoglossus_kowalevskii_v3.0		77	77
Petromyzon_marinus_76_7.0	(Sea lamprey)	32	32
Meleagris_gallopavo_76_2	(Turkey)	49	49
Gallus_gallus_76_4	(Chicken)	49	49
Anas_platyrhynchos_76_1.0	(Mallard)	52	52
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	52	52
Ficedula_albicollis_76_1.0	(Collared flycatcher)	48	48
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	58	58
Anolis_carolinensis_76_2.0	(Green anole)	52	52
Xenopus_laevis_	(African clawed frog)	170	170
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	58	58
Latimeria_chalumnae_76_1	(Coelacanth)	65	65
Lepisosteus_oculatus_76	(Spotted gar)	64	64
Gadus_morhua_76_1	(Atlantic cod)	77	75
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	83	83
Takifugu_rubripes_76_4	(Torafugu)	246	246
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	89	89
Oryzias_latipes_76_1	(Japanese medaka)	80	80
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	73	73
Poecilia_formosa_76	(Amazon molly)	74	73
Oreochromis_niloticus_76_1.0	(Nile tilapia)	94	94
Astyanax_mexicanus_76	(Mexican tetra)	75	74
Danio_rerio_76_9	(Zebrafish)	130	130
Oikopleura_dioica		37	37
Ciona_savignyi_76_2.0	(Pacific transparent sea squirt)	27	27
Ciona_intestinalis_76	(Vase tunicate)	23	23
Strongylocentrotus_purpuratus_v3.1	(Purple sea urchin)	42	41
Adineta_vaga		139	138
Octopus_bimaculoides_280		38	38
Crassostrea_gigas_22	(Pacific oyster)	43	42
Lottia_gigantea_	(Owl limpet)	31	31
Helobdella_robusta_		35	35
Capitella_sp._I_		41	40
Danaus_plexippus_OGS1.0	(Monarch butterfly)	20	20
Heliconius_melpomene_	(Postman butterfly)	18	18
Bombyx_mori_	(Domestic silkworm)	24	23
Nasonia_vitripennis_	(Jewel wasp)	15	15
Apis_mellifera_38.2d_(Not_maintained)	(Honey bee)	63	63
Harpegnathos_saltator_v3.3	(Jerdon's jumping ant)	19	19
Linepithema_humile_v1.1	(Argentine ant)	21	21
Pogonomyrmex_barbatus_v1.2	(Red harvester ant)	20	20
Solenopsis_invicta_v.2.2.3	(Red fire ant)	20	20
Acromyrmex_echinatior_v3.8	(Panamanian leafcutter ant)	20	20
Atta_cephalotes_v1.1		20	20
Camponotus_floridanus_v3.3	(Florida carpenter ant)	20	20
Lucilia_cuprina	(Australian sheep blowfly)	18	18
Drosophila_grimshawi_1.3		19	19
Drosophila_willistoni_1.3		18	18
Drosophila_pseudoobscura_2.13		19	19
Drosophila_persimilis_1.3		20	20
Drosophila_suzukii		23	20
Drosophila_yakuba_1.3		18	18
Drosophila_simulans_1.3		16	16
Drosophila_sechellia_1.3		17	17
Drosophila_melanogaster_76_5	(Fruit fly)	66	66
Drosophila_erecta_1.3		18	18
Drosophila_ananassae_1.3		19	19
Drosophila_virilis_1.2		18	18
Drosophila_mojavensis_1.3		18	18
Megaselia_scalaris_22		11	11
Aedes_aegypti_55_(Not_maintained)	(Yellow fever mosquito)	22	22
Culex_pipiens_quinquefasciatus_	(Southern house mosquito)	23	23
Anopheles_darlingi_22	(American malaria mosquito)	15	15
Anopheles_gambiae_49_3j	(African malaria mosquito)	24	24
Tribolium_castaneum_3.0	(Red flour beetle)	25	25
Pediculus_humanus_corporis__(Early_assembly)	(Human body louse)	18	18
Acyrthosiphon_pisum_	(Pea aphid)	15	15
Rhodnius_prolixus_22		20	20
Daphnia_pulex_	(Common water flea)	23	23
Strigamia_maritima_22		24	24
Sarcoptes_scabiei		17	17
Tetranychus_urticae_	(Two-spotted spider mite)	46	46
Ixodes_scapularis__(Preliminary)	(Black-legged tick)	20	20
Pristionchus_pacificus_		185	182
Meloidogyne_incognita_	(Southern root-knot nematode)	116	113
Meloidogyne_hapla_		52	52
Onchocerca_volvulus_22		27	27
Brugia_malayi_WS250	(Agent of lymphatic filariasis)	60	60
Caenorhabditis_japonica_		115	113
Caenorhabditis_brenneri_		293	275
Caenorhabditis_remanei_		319	312
Caenorhabditis_elegans_76_235	(Roundworm)	438	438
Caenorhabditis_briggsae_2		261	253
Trichinella_spiralis_22		18	17
Hymenolepis_microstoma_		13	12
Echinococcus_multilocularis_		16	16
Echinococcus_granulosus_		16	16
Taenia_solium_	(Pork tapeworm)	14	14
Schistosoma_mansoni_		22	21
Mnemiopsis_leidyi	(Sea walnut)	3	3
Acropora_digitifera_v1.0		9	9
Nematostella_vectensis_1.0	(Starlet sea anemone)	20	20
Hydra_vulgaris		8	8
Amphimedon_queenslandica		4	4
Trichoplax_adhaerens_		5	5
Tulasnella_calospora_AL13/4D_v1.0		1	1
Theobroma_cacao_B97-61/B2_v1	(Cacao)	1	1
Glycine_max_v109	(Soybean)	1	1
Cucumis_sativus_v122	(Cucumber)	1	1
Mimulus_guttatus_v140	(Spotted monkey flower)	1	1
Aquilegia_coerulea_v195		1	1
Triticum_aestivum_22	(Bread wheat)	2	2
Brachypodium_distachyon_	(Stiff brome)	1	1
Oryza_barthii_22	(African wild rice)	1	1
Oryza_meridionalis_22		2	2
Oryza_glumaepatula_22		2	2
Oryza_glaberrima	(African rice)	1	1
Oryza_punctata_22		2	2
Oryza_nivara_22		1	1
Oryza_brachyantha_22	(Malo sina)	2	2
Oryza_sativa_ssp._japonica_5.0	(Japanese rice)	1	1
Oryza_sativa_v193	(Rice)	1	1
Phyllostachys_heterocyclavar._pubescens	(Kikko-chiku)	1	1
Panicum_virgatum_v202	(Switchgrass)	1	1
Zea_mays_subsp._mays_	(Maize)	1	1
Zea_mays_v181	(Maize)	1	1
Musa_balbisiana	(Balbis banana)	1	1
Musa_acuminata_22	(Wild Malaysian banana)	1	1
Guillardia_theta_CCMP2712_v1.0_		1	1

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	96	96
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)	(Fruit fly)	48	48
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)	(African malaria mosquito)	28	28
Ascaris_suum_Victoria/Ghent_	(Pig roundworm)	51	50
Caenorhabditis_elegans_WormBase_WS218__(WormBase)	(Roundworm)	351	351
Hordeum_vulgare_22	(Domesticated barley)	3	3
Oryza_sativa_ssp._Indica_(Subspecies)	(Long-grained rice)	1	1

Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	54	53
Pan_troglodytes_69_2.1.4	(Chimpanzee)	46	46
Gorilla_gorilla_69_3.1	(Western gorilla)	50	50
Pongo_abelii_69_2	(Sumatran orangutan)	48	48
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	46	46
Macaca_mulatta_69_1	(Rhesus monkey)	49	48
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	48	48
Otolemur_garnettii_69_3	(Small-eared galago)	49	49
Microcebus_murinus_69_1	(Gray mouse lemur)	49	43
Rattus_norvegicus_69_3.4	(Norway rat)	45	45
Mus_musculus_69_38	(House mouse)	49	49
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	44	42
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	48	48
Cavia_porcellus_69_3	(Domestic guinea pig)	50	49
Oryctolagus_cuniculus_69_2	(Rabbit)	45	45
Ochotona_princeps_69	(American pika)	48	43
Tupaia_belangeri_69	(Northern tree shrew)	50	42
Sus_scrofa_69_10.2	(Pig)	50	50
Bos_taurus_69_3.1	(Cattle)	48	48
Vicugna_pacos_69_1	(Alpaca)	31	29
Tursiops_truncatus_69_1	(Bottlenose dolphin)	48	47
Mustela_putorius_furo_69_1.0	(Domestic ferret)	50	50
Ailuropoda_melanoleuca_69_1	(Giant panda)	50	50
Canis_familiaris_69_3.1	(Dog)	47	47
Felis_catus_69	(Domestic cat)	46	42
Equus_caballus_69_2	(Horse)	48	48
Myotis_lucifugus_69_2.0	(Little brown bat)	48	48
Pteropus_vampyrus_69_1	(Large flying fox)	49	48
Sorex_araneus_69_1	(European shrew)	36	32
Erinaceus_europaeus_69	(Western European hedgehog)	51	40
Procavia_capensis_69_1	(Cape rock hyrax)	43	43
Loxodonta_africana_69_3	(African savanna elephant)	50	50
Echinops_telfairi_69	(Small Madagascar hedgehog)	47	44
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	41	37
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	39	36
Macropus_eugenii_69_1.0	(Tammar wallaby)	51	47
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	49	49
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	46	46
Ornithorhynchus_anatinus_69_5	(Platypus)	43	43
Petromyzon_marinus_69_7.0	(Sea lamprey)	30	30
Meleagris_gallopavo_69_2	(Turkey)	39	39
Gallus_gallus_69_2	(Chicken)	41	41
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	52	52
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	49	49
Anolis_carolinensis_69_2.0	(Green anole)	49	49
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	52	52
Latimeria_chalumnae_69_1	(Coelacanth)	54	54
Gadus_morhua_69_1	(Atlantic cod)	73	71
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	71	71
Takifugu_rubripes_69_4	(Torafugu)	74	74
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	69	69
Oryzias_latipes_69_1	(Japanese medaka)	66	66
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	73	73
Oreochromis_niloticus_69_1.0	(Nile tilapia)	74	74
Danio_rerio_69_9	(Zebrafish)	76	76
Ciona_savignyi_69_2.0	(Pacific transparent sea squirt)	16	16
Ciona_intestinalis_69	(Vase tunicate)	19	19
Drosophila_melanogaster_69_5	(Fruit fly)	18	18
Caenorhabditis_elegans_69_215	(Roundworm)	279	279

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	263	262
Homo_sapiens__(NCBI_version)	(Human)	139	139
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	49	49
Heliconius_numata__(Incomplete)		3	3
Loa_loa_v3.3_(Request)	(Eye worm)	30	30
Wuchereria_bancrofti_v1.0_(Request)	(Agent of lymphatic filariasis)	31	31
Brugia_malayi_v1.0_(Duplicate)	(Agent of lymphatic filariasis)	28	28
Lotus_japonicus__(Early_assembly)		1	1
Protein_Data_Bank_(all_PDB_sequenc)		2195	2195
STRING_v9.0.5_(STRING)		2974	2924
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		4711	4711
PDB_chains_(SCOP_1.75)_(PDB)		148	148
Uniprot_2018_03_genome		25823	25490
NCBI_2017_08_genome		36298	36211
TargetDB__(Targets)		240	239
UniProt__viral_sequences_(Viral)		4	4

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