SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Fe-only hydrogenase smaller subunit superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Fe-only hydrogenase smaller subunit domain in that genome.

Complete genomes
Genome     Number   Proteins
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Solanum_tuberosum_   (Potato)   1 1
Triticum_urartu_22 1 1
Zea_mays_v181   (Maize)   1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Cyanophora_paradoxa_ 1 1
Naegleria_gruberi_ 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Syntrophothermus_lipocalidus_DSM_12680 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Clostridium_beijerinckii_NCIMB_8052 1 1
Thermodesulfobium_narugense_DSM_14796 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Desulfurobacterium_thermolithotrophum_DSM_11699 1 1
Thermodesulfovibrio_yellowstonii_DSM_11347 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfovibrio_aespoeensis_Aspo-2 2 2
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_alaskensis_G20 2 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_sp._MR-4 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Clostridium_saccharobutylicum_DSM_13864 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._Hildenborough 1 1
Shewanella_sp._ANA-3 1 1

Longest transcript per gene
Genome     Number   Proteins
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   1 1

Others
Genome     Number   Proteins
Uniprot_2018_03_genome 185 185
NCBI_2017_08_genome 225 225
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 4 4
STRING_v9.0.5_(STRING) 15 15
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 28 28

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]