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Domain combinations for Invasin/intimin cell-adhesion fragments superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Invasin/intimin cell-adhesion fragments domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   6 4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3 2
Gorilla_gorilla_76_3.1   (Western gorilla)   6 4
Pongo_abelii_76_2   (Sumatran orangutan)   3 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3 2
Papio_anubis_76   (Olive baboon)   2 2
Macaca_mulatta_76_1   (Rhesus monkey)   4 3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   10 7
Otolemur_garnettii_76_3   (Small-eared galago)   3 2
Microcebus_murinus_76_1   (Gray mouse lemur)   3 2
Rattus_norvegicus_76_5.0   (Norway rat)   3 2
Mus_musculus_76_38   (House mouse)   4 3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2 2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3 2
Cavia_porcellus_76_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_76_2   (Rabbit)   3 2
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   1 1
Sus_scrofa_76_10.2   (Pig)   1 1
Bos_taurus_76_3.1   (Cattle)   2 2
Ovis_aries_76_3.1   (Sheep)   3 2
Vicugna_pacos_76_1   (Alpaca)   2 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 2
Ailuropoda_melanoleuca_76_1   (Giant panda)   4 3
Canis_familiaris_76_3.1   (Dog)   5 4
Felis_catus_76_6.2   (Domestic cat)   3 2
Equus_caballus_76_2   (Horse)   5 4
Myotis_lucifugus_76_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_76_1   (Large flying fox)   3 2
Sorex_araneus_76_1   (European shrew)   2 1
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   1 1
Loxodonta_africana_76_3   (African savanna elephant)   4 2
Echinops_telfairi_76   (Small Madagascar hedgehog)   3 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3 3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4 2
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 1 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   2 2
Gallus_gallus_76_4   (Chicken)   3 2
Anas_platyrhynchos_76_1.0   (Mallard)   3 2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4 3
Anolis_carolinensis_76_2.0   (Green anole)   4 2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_76_1   (Coelacanth)   4 2
Lepisosteus_oculatus_76   (Spotted gar)   4 3
Gadus_morhua_76_1   (Atlantic cod)   1 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_76_4   (Torafugu)   5 3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1 1
Oryzias_latipes_76_1   (Japanese medaka)   2 1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 1
Poecilia_formosa_76   (Amazon molly)   2 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Danio_rerio_76_9   (Zebrafish)   3 3
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Adineta_vaga 2 2
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   1 1
Capitella_sp._I_ 1 1
Nasonia_vitripennis_   (Jewel wasp)   2 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   19 3
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 1 1
Drosophila_persimilis_1.3 1 1
Drosophila_yakuba_1.3 1 1
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   1 1
Drosophila_erecta_1.3 1 1
Drosophila_ananassae_1.3 1 1
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   2 1
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 4 4
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 1 1
Amphimedon_queenslandica 2 2
Trichoplax_adhaerens_ 2 1
Proterospongia_sp._ATCC_50818_ 2 1
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Trichoderma_atroviride_ 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Alternaria_brassicicola_ 2 2
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 1 1
Dictyostelium_discoideum 3 1
Dictyostelium_purpureum_ 3 2
Entamoeba_dispar_1.2 2 1
Entamoeba_invadens_1.2 15 5
Entamoeba_histolytica_1 2 1
Selaginella_moellendorffii_ 5 3
Eucalyptus_grandis_v201   (Rose gum)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 1 1
Citrus_sinensis_v154   (Sweet orange)   5 5
Thellungiella_halophila_v173 4 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   5 4
Arabidopsis_thaliana_10   (Thale cress)   1 1
Medicago_truncatula_   (Barrel medic)   1 1
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   1 1
Cucumis_sativus_v122   (Cucumber)   2 2
Fragaria_vesca_   (Wild strawberry)   2 1
Malus_domestica_v196   (Apple)   1 1
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   5 5
Solanum_lycopersicum_v.2.3   (Tomato)   2 1
Solanum_tuberosum_   (Potato)   1 1
Actinidia_chinensis_Hongyang_ 1 1
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   3 3
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 3 3
Oryza_punctata_22 1 1
Oryza_nivara_22 1 1
Oryza_brachyantha_22   (Malo sina)   1 1
Setaria_italica_v164   (Foxtail millet)   2 2
Zea_mays_v181   (Maize)   1 1
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 1 1
Physcomitrella_patens 4 3
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Chlorella_vulgaris_ 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Cyanophora_paradoxa_ 9 4
Tetrahymena_thermophila_SB210_1_ 1 1
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 9 6
Leptolyngbya_sp._PCC_7376 1 1
Acaryochloris_marina_MBIC11017 4 2
Synechocystis_sp._PCC_6803 1 1
Gloeocapsa_sp._PCC_7428 3 2
Rivularia_sp._PCC_7116 2 2
Calothrix_sp._PCC_7507 1 1
Nostoc_sp._PCC_7107 2 1
Nostoc_sp._PCC_7524 3 3
Conexibacter_woesei_DSM_14684 1 1
Cryptobacterium_curtum_DSM_15641 1 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 1 1
Slackia_heliotrinireducens_DSM_20476 3 2
Olsenella_uli_DSM_7084 1 1
Atopobium_parvulum_DSM_20469 2 2
Ilumatobacter_coccineus 1 1
Thermobispora_bispora_DSM_43833 1 1
Modestobacter_marinus 1 1
Catenulispora_acidiphila_DSM_44928 7 7
Frankia_sp._EAN1pec 3 3
Frankia_alni_ACN14a 1 1
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 2 2
Streptomyces_violaceusniger_Tu_4113 3 3
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Pseudonocardia_dioxanivorans_CB1190 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 1 1
Nocardioides_sp._JS614 1 1
Microlunatus_phosphovorus_NM-1 1 1
Actinoplanes_sp._N902-109 1 1
Rhodococcus_opacus_B4 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Beutenbergia_cavernae_DSM_12333 37 2
Leifsonia_xyli_subsp._xyli_str._CTCB07 1 1
Microbacterium_testaceum_StLB037 6 4
Arthrobacter_aurescens_TC1 4 1
Bifidobacterium_longum_subsp._longum_JDM301 3 3
Bifidobacterium_dentium_Bd1 1 1
Bifidobacterium_bifidum_S17 11 5
Dehalococcoides_sp._BAV1 4 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Thermomicrobium_roseum_DSM_5159 2 2
Sphaerobacter_thermophilus_DSM_20745 17 7
Roseiflexus_sp._RS-1 2 1
Chloroflexus_sp._MS-G 3 3
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Deinococcus_gobiensis_I-0 2 2
Deinococcus_geothermalis_DSM_11300 3 3
Deinococcus_radiodurans_R1 1 1
Marinithermus_hydrothermalis_DSM_14884 8 4
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 3 2
Thermus_sp._CCB_US3_UF1 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Finegoldia_magna_ATCC_29328 4 3
Erysipelothrix_rhusiopathiae_str._Fujisawa 9 5
Natranaerobius_thermophilus_JW/NM-WN-LF 1 1
Symbiobacterium_thermophilum_IAM_14863 3 3
Clostridium_clariflavum_DSM_19732 17 8
Eubacterium_siraeum 2 2
Clostridium_cellulolyticum_H10 7 5
Clostridium_thermocellum_ATCC_27405 9 3
Ethanoligenens_harbinense_YUAN-3 3 3
Faecalibacterium_prausnitzii 4 2
Ruminococcus_sp. 16 10
Ruminococcus_bromii 11 7
Ruminococcus_albus_7 3 3
Sulfobacillus_acidophilus_DSM_10332 1 1
Oscillibacter_valericigenes_Sjm18-20 4 3
butyrate-producing_bacterium_SS3/4 1 1
butyrate-producing_bacterium_SM4/1 1 1
Thermincola_potens_JR 2 1
Desulfosporosinus_acidiphilus_SJ4 13 6
Desulfosporosinus_orientis_DSM_765 11 6
Dehalobacter_sp._DCA 3 2
Dehalobacter_sp._CF 4 3
Desulfitobacterium_hafniense_Y51 11 7
Desulfitobacterium_dehalogenans_ATCC_51507 10 6
Desulfotomaculum_reducens_MI-1 5 3
Desulfotomaculum_acetoxidans_DSM_771 21 8
Desulfotomaculum_kuznetsovii_DSM_6115 13 4
Acetobacterium_woodii_DSM_1030 7 5
Eubacterium_eligens_ATCC_27750 11 2
Eubacterium_limosum_KIST612 11 6
Clostridium_sticklandii_DSM_519 1 1
Clostridium_saccharolyticum_WM1 4 2
Clostridium_phytofermentans_ISDg 48 22
Clostridium_lentocellum_DSM_5427 2 1
[Ruminococcus]_obeum 26 15
Eubacterium_rectale_M104/1 4 2
Eubacterium_rectale_ATCC_33656 5 3
Coprococcus_sp._ART55/1 6 4
Roseburia_hominis_A2-183 2 2
Roseburia_intestinalis 23 10
Butyrivibrio_proteoclasticus_B316 6 3
Butyrivibrio_fibrisolvens 6 2
Syntrophothermus_lipocalidus_DSM_12680 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 11 9
Heliobacterium_modesticaldum_Ice1 5 4
Clostridium_sp._BNL1100 9 8
Clostridium_ljungdahlii_DSM_13528 19 8
Clostridium_kluyveri_DSM_555 2 2
Clostridium_beijerinckii_NCIMB_8052 14 8
Clostridium_tetani_E88 11 5
Clostridium_perfringens_ATCC_13124 4 2
Clostridium_cellulovorans_743B 48 18
Clostridium_botulinum_A_str._ATCC_3502 1 1
Clostridium_acetobutylicum_ATCC_824 32 18
Mahella_australiensis_50-1_BON 11 5
Caldicellulosiruptor_obsidiansis_OB47 3 2
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 1 1
Caldicellulosiruptor_owensensis_OL 1 1
Caldicellulosiruptor_lactoaceticus_6A 3 2
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 3 2
Caldicellulosiruptor_bescii_DSM_6725 3 2
Coprothermobacter_proteolyticus_DSM_5265 1 1
Tepidanaerobacter_acetatoxydans_Re1 2 2
Thermoanaerobacter_tengcongensis_MB4 1 1
Carboxydothermus_hydrogenoformans_Z-2901 1 1
Moorella_thermoacetica_ATCC_39073 2 2
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 4 2
Thermoanaerobacter_pseudethanolicus_ATCC_33223 3 2
Thermoanaerobacter_sp._X514 2 1
Thermoanaerobacter_wiegelii_Rt8.B1 3 2
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 3 2
Halanaerobium_hydrogeniformans 1 1
Tetragenococcus_halophilus_NBRC_12172 1 1
Enterococcus_sp._7L76 3 3
Enterococcus_hirae_ATCC_9790 1 1
Enterococcus_faecalis_62 2 2
Lactobacillus_plantarum_JDM1 2 2
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 1 1
Pediococcus_pentosaceus_ATCC_25745 1 1
Lactococcus_garvieae_ATCC_49156 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Streptococcus_agalactiae_A909 2 1
Streptococcus_mutans_NN2025 1 1
Streptococcus_sanguinis_SK36 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 1 1
Exiguobacterium_sp._MH3 3 3
Exiguobacterium_sp._AT1b 1 1
Exiguobacterium_sibiricum_255-15 2 2
Kyrpidia_tusciae_DSM_2912 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 3 2
Brevibacillus_brevis_NBRC_100599 42 8
Paenibacillus_sp._JDR-2 30 11
Paenibacillus_terrae_HPL-003 19 6
Paenibacillus_mucilaginosus_3016 18 12
Paenibacillus_polymyxa_M1 16 5
Bacillus_selenitireducens_MLS10 4 3
Listeria_innocua_Clip11262 1 1
Solibacillus_silvestris_StLB046 5 5
Geobacillus_thermoglucosidasius_C56-YS93 2 2
Lysinibacillus_sphaericus_C3-41 3 3
Anoxybacillus_flavithermus_WK1 3 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Geobacillus_kaustophilus_HTA426 1 1
Geobacillus_sp._GHH01 1 1
Geobacillus_sp._WCH70 3 3
Geobacillus_thermodenitrificans_NG80-2 1 1
Halobacillus_halophilus_DSM_2266 1 1
Bacillus_atrophaeus_1942 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_halodurans_C-125 1 1
Bacillus_weihenstephanensis_KBAB4 2 2
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 2 2
Bacillus_pseudofirmus_OF4 2 2
Bacillus_clausii_KSM-K16 1 1
Bacillus_pumilus_SAFR-032 1 1
Staphylococcus_pseudintermedius_HKU10-03 2 2
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Staphylococcus_aureus_subsp._aureus_JH1 2 2
Candidatus_Cloacamonas_acidaminovorans 4 3
Gemmatimonas_aurantiaca_T-27 68 26
Melioribacter_roseus_P3M 3 3
Haliscomenobacter_hydrossis_DSM_1100 1 1
Saprospira_grandis_str._Lewin 29 3
Niastella_koreensis_GR20-10 8 7
Chitinophaga_pinensis_DSM_2588 4 4
Salinibacter_ruber_M8 2 1
Rhodothermus_marinus_DSM_4252 1 1
Flexibacter_litoralis_DSM_6794 2 1
Cyclobacterium_marinum_DSM_745 9 3
Marivirga_tractuosa_DSM_4126 2 2
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 13 3
Spirosoma_linguale_DSM_74 2 2
Runella_slithyformis_DSM_19594 3 2
Parabacteroides_distasonis_ATCC_8503 4 4
Tannerella_forsythia_ATCC_43037 34 16
Paludibacter_propionicigenes_WB4 8 5
Odoribacter_splanchnicus_DSM_20712 2 2
Bacteroides_sp._CF50 1 1
Prevotella_intermedia_17 2 2
Prevotella_denticola_F0289 1 1
Prevotella_ruminicola_23 5 4
Porphyromonas_asaccharolytica_DSM_20707 13 10
Alistipes_finegoldii_DSM_17242 4 3
Bacteroides_salanitronis_DSM_18170 3 3
Bacteroides_helcogenes_P_36-108 3 2
Bacteroides_vulgatus_ATCC_8482 2 2
Bacteroides_thetaiotaomicron_VPI-5482 7 5
Bacteroides_fragilis_YCH46 3 3
Pedobacter_saltans_DSM_12145 8 4
Solitalea_canadensis_DSM_3403 4 4
Pedobacter_heparinus_DSM_2366 5 3
Sphingobacterium_sp._21 10 2
Fluviicola_taffensis_DSM_16823 6 2
Gramella_forsetii_KT0803 2 2
Lacinutrix_sp._5H-3-7-4 1 1
Maribacter_sp._HTCC2170 1 1
Robiginitalea_biformata_HTCC2501 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Zobellia_galactanivorans 10 4
Muricauda_ruestringensis_DSM_13258 1 1
Cellulophaga_algicola_DSM_14237 11 3
Cellulophaga_lytica_DSM_7489 4 4
Ornithobacterium_rhinotracheale_DSM_15997 1 1
Capnocytophaga_canimorsus_Cc5 6 5
Flavobacterium_psychrophilum_JIP02/86 5 1
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 6 3
Isosphaera_pallida_ATCC_43644 5 4
Planctomyces_brasiliensis_DSM_5305 2 2
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 4 3
Pirellula_staleyi_DSM_6068 1 1
Coraliomargarita_akajimensis_DSM_45221 7 7
Akkermansia_muciniphila_ATCC_BAA-835 2 2
Turneriella_parva_DSM_21527 1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 3 1
Leptospira_interrogans_serovar_Lai_str._IPAV 2 1
Sphaerochaeta_globus_str._Buddy 6 4
Treponema_azotonutricium_ZAS-9 17 6
Treponema_primitia_ZAS-2 1 1
Treponema_brennaborense_DSM_12168 1 1
Treponema_succinifaciens_DSM_2489 6 2
Treponema_denticola_ATCC_35405 2 1
Spirochaeta_africana_DSM_8902 3 1
Spirochaeta_thermophila_DSM_6192 1 1
Desulfurispirillum_indicum_S5 1 1
Denitrovibrio_acetiphilus_DSM_12809 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Thermosipho_melanesiensis_BI429 1 1
Thermotoga_thermarum_DSM_5069 1 1
Thermotoga_sp._RQ2 1 1
Thermotoga_naphthophila_RKU-10 2 2
Thermotoga_petrophila_RKU-1 1 1
Thermotoga_neapolitana_DSM_4359 1 1
Thermotoga_maritima_MSB8 2 2
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 50 17
Granulicella_tundricola_MP5ACTX9 20 4
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 6 5
Terriglobus_saanensis_SP1PR4 12 1
Terriglobus_roseus_DSM_18391 1 1
Acidobacterium_capsulatum_ATCC_51196 2 2
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Sulfurovum_sp._NBC37-1 11 2
Desulfarculus_baarsii_DSM_2075 2 2
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfurivibrio_alkaliphilus_AHT2 3 1
Desulfatibacillum_alkenivorans_AK-01 14 5
Desulfococcus_oleovorans_Hxd3 3 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_alaskensis_G20 2 2
Geobacter_daltonii_FRC-32 6 6
Geobacter_sp._M21 6 3
Geobacter_uraniireducens_Rf4 16 5
Geobacter_bemidjiensis_Bem 2 2
Geobacter_sulfurreducens_KN400 1 1
Haliangium_ochraceum_DSM_14365 3 2
Anaeromyxobacter_sp._Fw109-5 5 4
Anaeromyxobacter_dehalogenans_2CP-1 3 2
Stigmatella_aurantiaca_DW4/3-1 21 10
Corallococcus_coralloides_DSM_2259 7 5
Myxococcus_xanthus_DK_1622 8 6
Myxococcus_fulvus_HW-1 5 4
Chromobacterium_violaceum_ATCC_12472 1 1
Rubrivivax_gelatinosus_IL144 2 1
Leptothrix_cholodnii_SP-6 3 2
Burkholderia_rhizoxinica_HKI_454 3 1
Ralstonia_eutropha_H16 1 1
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_mallei_SAVP1 1 1
Delftia_sp._Cs1-4 10 3
Delftia_acidovorans_SPH-1 13 5
Variovorax_paradoxus_S110 1 1
Rhodoferax_ferrireducens_T118 7 3
Acidovorax_citrulli_AAC00-1 4 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 4 1
Achromobacter_xylosoxidans_A8 10 1
Achromobacter_xylosoxidans 2 1
Sideroxydans_lithotrophicus_ES-1 1 1
Asticcacaulis_excentricus_CB_48 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 1 1
Caulobacter_segnis_ATCC_21756 1 1
Pseudovibrio_sp._FO-BEG1 1 1
Ochrobactrum_anthropi_ATCC_49188 2 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 2 2
Cellvibrio_japonicus_Ueda107 4 3
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 3 1
Vibrio_fischeri_MJ11 22 2
Vibrio_harveyi_ATCC_BAA-1116 16 6
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_anguillarum_775 4 1
Vibrio_vulnificus_MO6-24/O 2 1
Photobacterium_profundum_SS9 1 1
Psychromonas_ingrahamii_37 1 1
Psychromonas_sp._CNPT3 16 7
Ferrimonas_balearica_DSM_9799 14 3
Shewanella_piezotolerans_WP3 5 2
Shewanella_loihica_PV-4 4 2
Shewanella_halifaxensis_HAW-EB4 14 4
Shewanella_sediminis_HAW-EB3 7 3
Shewanella_denitrificans_OS217 6 2
Shewanella_pealeana_ATCC_700345 11 6
Shewanella_oneidensis_MR-1 8 2
Shewanella_baltica_OS185 10 5
Shewanella_woodyi_ATCC_51908 6 2
Shewanella_sp._MR-4 7 2
Shewanella_amazonensis_SB2B 3 1
Shewanella_violacea_DSS12 7 4
Shewanella_frigidimarina_NCIMB_400 9 3
Shewanella_putrefaciens_CN-32 6 2
Colwellia_psychrerythraea_34H 6 3
Pseudoalteromonas_sp._SM9913 3 1
Pseudoalteromonas_atlantica_T6c 14 8
Pseudoalteromonas_haloplanktis_TAC125 4 1
Glaciecola_sp._4H-3-7+YE-5 16 9
Glaciecola_nitratireducens_FR1064 8 2
Marinobacter_adhaerens_HP15 4 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 4 1
Marinobacter_aquaeolei_VT8 4 1
Alteromonas_sp._SN2 11 3
Alteromonas_macleodii_str._'Deep_ecotype' 6 1
Hahella_chejuensis_KCTC_2396 8 2
Alkalilimnicola_ehrlichii_MLHE-1 3 2
Halorhodospira_halophila_SL1 1 1
Legionella_longbeachae_NSW150 5 1
gamma_proteobacterium_HdN1 1 1
Photorhabdus_asymbiotica 11 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 10 2
Xenorhabdus_bovienii_SS-2004 38 11
Xenorhabdus_nematophila_ATCC_19061 12 4
Proteus_mirabilis_HI4320 16 1
Edwardsiella_ictaluri_93-146 12 1
Edwardsiella_tarda_EIB202 21 4
Rahnella_sp._Y9602 2 2
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 4 2
Yersinia_pseudotuberculosis_IP_31758 74 4
Yersinia_pestis_Pestoides_F 55 7
Yersinia_enterocolitica_subsp._enterocolitica_8081 21 4
Serratia_sp._AS12 1 1
Serratia_sp._ATCC_39006 2 1
Serratia_plymuthica_AS9 1 1
Sodalis_glossinidius_str._'morsitans' 4 1
Pantoea_sp._At-9b 3 2
Erwinia_tasmaniensis_Et1/99 4 1
Erwinia_sp._Ejp617 9 2
Erwinia_billingiae_Eb661 23 1
Erwinia_pyrifoliae_Ep1/96 17 4
Erwinia_amylovora_ATCC_49946 5 1
Cronobacter_sakazakii_ES15 12 5
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 2 2
Shigella_dysenteriae_Sd197 7 3
Shigella_boydii_CDC_3083-94 3 3
Salmonella_bongori_NCTC_12419 14 2
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Klebsiella_variicola_At-22 2 2
Enterobacter_aerogenes_KCTC_2190 2 2
Escherichia_fergusonii_ATCC_35469 17 5
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 16 1
Enterobacter_sp._R4-368 7 2
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 8 1
Citrobacter_rodentium_ICC168 11 2
Citrobacter_koseri_ATCC_BAA-895 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 4 2
Pseudomonas_entomophila_L48 4 2
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_putida_F1 1 1
Psychrobacter_sp._G 2 1
Psychrobacter_cryohalolentis_K5 2 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Acinetobacter_sp._ADP1 3 1
Candidatus_Caldiarchaeum_subterraneum 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
halophilic_archaeon_DL31 2 2
Methanocella_arvoryzae_MRE50 11 6
Methanocella_conradii_HZ254 6 3
Methanocella_paludicola_SANAE 19 11
Methanohalobium_evestigatum_Z-7303 3 2
Methanococcoides_burtonii_DSM_6242 2 2
Methanosarcina_acetivorans_C2A 7 6
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 4 2
Methanospirillum_hungatei_JF-1 1 1
Methanoplanus_petrolearius_DSM_11571 2 2
Methanoculleus_bourgensis_MS2 30 6
Methanoculleus_marisnigri_JR1 19 3
Ferroglobus_placidus_DSM_10642 4 3
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_veneficus_SNP6 3 3
Archaeoglobus_fulgidus_DSM_4304 2 2
Thermococcus_sp._4557 3 3
Thermococcus_onnurineus_NA1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Haloterrigena_turkmenica_DSM_5511 2 2
Natrinema_sp._J7-2 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 4 4
Halomicrobium_mukohataei_DSM_12286 3 3
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 1 1
Haloarcula_hispanica_ATCC_33960 3 3
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 1 1
Methanosphaera_stadtmanae_DSM_3091 6 5
Methanobrevibacter_sp._AbM4 7 5
Methanobrevibacter_ruminantium_M1 74 51
Methanobrevibacter_smithii_ATCC_35061 20 17
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1 1
Aciduliprofundum_sp._MAR08-339 4 1
Aciduliprofundum_boonei_T469 3 1
Acholeplasma_laidlawii_PG-8A 14 5

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1 1
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1 1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   3 3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Synechococcus_sp._PCC_7002 1 1
Crinalium_epipsammum_PCC_9333 2 2
Oscillatoria_nigro-viridis_PCC_7112 2 2
Cyanothece_sp._PCC_7822 3 2
Cyanothece_sp._PCC_7424 2 1
Cyanobacterium_aponinum_PCC_10605 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 4 1
Stanieria_cyanosphaera_PCC_7437 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 2 1
Cylindrospermum_stagnale_PCC_7417 3 1
Anabaena_cylindrica_PCC_7122 1 1
Gordonibacter_pamelaeae_7-10-1-b 1 1
Adlercreutzia_equolifaciens_DSM_19450 1 1
Frankia_sp._EuI1c 2 2
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 2 2
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_davawensis_JCM_4913 2 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 10 4
Bifidobacterium_longum_NCC2705 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_longum_subsp._infantis_157F 2 2
Bifidobacterium_longum_subsp._longum_KACC_91563 1 1
Bifidobacterium_longum_subsp._longum_BBMN68 4 4
Bifidobacterium_longum_subsp._longum_F8 3 3
Bifidobacterium_longum_subsp._longum_JCM_1217 5 4
Bifidobacterium_thermophilum_RBL67 2 1
Bifidobacterium_breve_UCC2003 1 1
Bifidobacterium_bifidum_PRL2010 11 5
Bifidobacterium_bifidum_BGN4 11 5
Actinomyces_odontolyticus_ATCC_17982 1 1
Dehalococcoides_mccartyi_GY50 4 1
Chthonomonas_calidirosea_T49 2 2
Deinococcus_peraridilitoris_DSM_19664 1 1
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 1 1
Erysipelothrix_rhusiopathiae_SY1027 9 5
Eubacterium_siraeum_V10Sc8a 7 4
Clostridium_thermocellum_DSM_1313 10 4
Faecalibacterium_prausnitzii_L2-6 9 4
Sulfobacillus_acidophilus_TPY 1 1
Desulfosporosinus_meridiei_DSM_13257 12 6
Desulfitobacterium_dichloroeliminans_LMG_P-21439 2 1
Desulfitobacterium_hafniense_DCB-2 8 5
Desulfotomaculum_gibsoniae_DSM_7213 5 5
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Roseburia_intestinalis_XB6B4 26 12
Clostridium_sp._SY8519 17 15
Clostridium_saccharobutylicum_DSM_13864 9 7
Clostridium_autoethanogenum_DSM_10061 11 4
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 24 18
Clostridium_kluyveri_NBRC_12016 2 2
Clostridium_tetani_genome_12124569 11 6
Clostridium_perfringens_str._13 1 1
Clostridium_pasteurianum_BC1 7 5
Clostridium_botulinum_H04402_065 2 2
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 2 2
Clostridium_botulinum_B1_str._Okra 2 2
Clostridium_botulinum_Ba4_str._657 2 2
Clostridium_botulinum_A2_str._Kyoto 2 2
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Clostridium_acetobutylicum_DSM_1731 34 19
Clostridium_acetobutylicum_EA_2018 34 19
Thermacetogenium_phaeum_DSM_12270 1 1
Thermoanaerobacter_sp._X513 2 1
Halobacteroides_halobius_DSM_5150 1 1
Carnobacterium_maltaromaticum_LMA28 7 6
Enterococcus_mundtii_QU_25 1 1
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 3 3
Enterococcus_faecalis_OG1RF 1 1
Enterococcus_faecalis_V583 2 2
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_plantarum_16 2 2
Lactobacillus_plantarum_ZJ316 2 2
Lactobacillus_plantarum_subsp._plantarum_ST-III 2 2
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_plantarum_WCFS1 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 1 1
Pediococcus_pentosaceus_SL4 1 1
Lactococcus_garvieae_Lg2 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 3 3
Lactococcus_lactis_subsp._lactis_IO-1 1 1
Lactococcus_lactis_subsp._lactis_CV56 2 2
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 2 1
Streptococcus_agalactiae_09mas018883 2 1
Streptococcus_agalactiae_2-22 2 1
Streptococcus_agalactiae_SA20-06 2 1
Streptococcus_agalactiae_GD201008-001 2 1
Streptococcus_agalactiae_NEM316 2 1
Streptococcus_agalactiae_2603V/R 2 1
Streptococcus_mutans_GS-5 1 1
Streptococcus_mutans_LJ23 1 1
Streptococcus_mutans_UA159 1 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_D12 1 1
Exiguobacterium_antarcticum_B7 2 2
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 4 4
Thermobacillus_composti_KWC4 10 3
Paenibacillus_sp._Y412MC10 45 19
Paenibacillus_mucilaginosus_KNP414 18 12
Paenibacillus_mucilaginosus_K02 19 13
Paenibacillus_polymyxa_CR1 15 4
Paenibacillus_polymyxa_SC2 16 5
Paenibacillus_polymyxa_E681 15 3
Listeria_monocytogenes_N53-1 1 1
Listeria_monocytogenes_La111 1 1
Listeria_monocytogenes_M7 1 1
Listeria_monocytogenes_J1-220 1 1
Listeria_monocytogenes_J1816 1 1
Listeria_monocytogenes_SLCC2479 1 1
Listeria_monocytogenes_SLCC7179 1 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1 1
Listeria_monocytogenes_08-5578 1 1
Listeria_monocytogenes_08-5923 1 1
Listeria_monocytogenes_L99 1 1
Listeria_monocytogenes_HCC23 1 1
Listeria_monocytogenes_10403S 1 1
Listeria_monocytogenes_J0161 1 1
Listeria_monocytogenes_FSL_R2-561 1 1
Listeria_monocytogenes_EGD-e 1 1
Geobacillus_sp._C56-T3 1 1
Geobacillus_sp._Y4.1MC1 2 2
Geobacillus_sp._Y412MC52 1 1
Geobacillus_sp._Y412MC61 1 1
Amphibacillus_xylanus_NBRC_15112 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1 1
Bacillus_amyloliquefaciens_LFB112 1 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_infantis_NRRL_B-14911 2 2
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 2 2
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_MC28 2 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_YBT-1518 2 2
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2 2
Bacillus_thuringiensis_BMB171 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_G9842 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_E33L 2 2
Bacillus_cereus_ATCC_14579 1 1
Bacillus_cereus_ATCC_10987 1 1
Bacillus_anthracis_str._H9401 2 2
Bacillus_anthracis_str._CDC_684 2 2
Bacillus_anthracis_str._'Ames_Ancestor' 2 2
Bacillus_anthracis_str._Sterne 2 2
Bacillus_anthracis_str._Ames 2 2
Staphylococcus_aureus_CA-347 2 2
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 2 2
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_04-02981 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_CN1 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 2 2
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1 1
Staphylococcus_aureus_subsp._aureus_JKD6159 2 2
Staphylococcus_aureus_subsp._aureus_ED133 3 3
Staphylococcus_aureus_subsp._aureus_ED98 2 2
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 2 2
Staphylococcus_aureus_subsp._aureus_TCH60 2 2
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_71193 1 1
Staphylococcus_aureus_subsp._aureus_S0385 2 2
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 2 2
Staphylococcus_aureus_subsp._aureus_JH9 2 2
Staphylococcus_aureus_subsp._aureus_MSSA476 2 2
Staphylococcus_aureus_subsp._aureus_MRSA252 2 2
Staphylococcus_aureus_subsp._aureus_MW2 2 2
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 2 2
Salinibacter_ruber_DSM_13855 1 1
Rhodothermus_marinus_SG0.5JP17-172 2 2
Echinicola_vietnamensis_DSM_17526 2 2
Prevotella_dentalis_DSM_3688 1 1
Alistipes_shahii_WAL_8301 1 1
Bacteroides_xylanisolvens_XB1A 5 3
Bacteroides_fragilis_638R 3 3
Bacteroides_fragilis_NCTC_9343 3 3
Nonlabens_dokdonensis_DSW-6 3 3
Riemerella_anatipestifer_RA-CH-1 2 2
Riemerella_anatipestifer_RA-GD 1 1
Chlamydia_trachomatis_J/6276tet1 1 1
Chlamydia_trachomatis_RC-J(s)/122 1 1
Chlamydia_trachomatis_RC-F(s)/342 1 1
Chlamydia_trachomatis_RC-Fs852 1 1
Singulisphaera_acidiphila_DSM_18658 13 10
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 3 1
Leptospira_interrogans_serovar_Lai_str._56601 2 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 5 2
Spirochaeta_thermophila_DSM_6578 2 2
Thermotoga_maritima_MSB8 2 2
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Desulfobacula_toluolica_Tol2 2 2
Geobacter_sp._M18 4 3
Geobacter_sulfurreducens_PCA 1 1
Anaeromyxobacter_sp._K 3 2
Anaeromyxobacter_dehalogenans_2CP-C 5 2
Myxococcus_stipitatus_DSM_14675 9 5
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_solanacearum_PSI07 1 1
Burkholderia_thailandensis_MSMB121 2 2
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_mallei_NCTC_10229 1 1
Burkholderia_mallei_NCTC_10247 1 1
Burkholderia_mallei_ATCC_23344 1 1
Variovorax_paradoxus_EPS 2 1
Octadecabacter_arcticus_238 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_ceti_TE28753-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 3 2
Vibrio_fischeri_ES114 2 1
Vibrio_sp._EJY3 2 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 5 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 2 1
Vibrio_vulnificus_YJ016 5 2
Shewanella_sp._W3-18-1 6 3
Shewanella_sp._ANA-3 7 2
Shewanella_baltica_BA175 9 6
Shewanella_baltica_OS678 13 5
Shewanella_baltica_OS117 13 4
Shewanella_baltica_OS223 8 5
Shewanella_baltica_OS195 15 7
Shewanella_baltica_OS155 14 4
Shewanella_sp._MR-7 7 2
Shewanella_putrefaciens_200 7 3
Glaciecola_psychrophila_170 14 4
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 7 2
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 7 2
Alteromonas_macleodii_str._'Ionian_Sea_U8' 7 2
Alteromonas_macleodii_str._'Ionian_Sea_U7' 7 2
Alteromonas_macleodii_str._'Ionian_Sea_U4' 7 2
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 6 1
Alteromonas_macleodii_str._'English_Channel_615' 7 2
Alteromonas_macleodii_AltDE1 7 2
Alteromonas_macleodii_str._'English_Channel_673' 6 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 6 1
Alteromonas_macleodii_str._'Black_Sea_11' 5 1
Alteromonas_macleodii_ATCC_27126 6 1
Thioalkalivibrio_nitratireducens_DSM_14787 5 2
Proteus_mirabilis_BB2000 16 1
Morganella_morganii_subsp._morganii_KT 25 2
Edwardsiella_tarda_C07-087 18 2
Edwardsiella_tarda_FL6-60 21 4
Rahnella_aquatilis_HX2 2 2
Yersinia_pseudotuberculosis_PB1/+ 43 3
Yersinia_pseudotuberculosis_YPIII 70 4
Yersinia_pseudotuberculosis_IP_32953 60 3
Yersinia_pestis_biovar_Microtus_str._91001 28 3
Yersinia_pestis_A1122 38 7
Yersinia_pestis_Z176003 38 7
Yersinia_pestis_D182038 38 7
Yersinia_pestis_D106004 38 7
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 41 7
Yersinia_pestis_Nepal516 51 8
Yersinia_pestis_Antiqua 38 7
Yersinia_pestis_Angola 37 6
Yersinia_pestis_CO92 34 6
Yersinia_pestis_KIM10+ 34 6
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 8 2
Yersinia_enterocolitica_subsp._palearctica_Y11 8 2
Serratia_sp._AS13 1 1
Erwinia_pyrifoliae_DSM_12163 15 4
Erwinia_amylovora_CFBP1430 5 1
Cronobacter_sakazakii_CMCC_45402 1 1
Cronobacter_sakazakii_SP291 10 5
Cronobacter_sakazakii_ATCC_BAA-894 11 4
Shigella_sonnei_53G 11 3
Shigella_flexneri_2002017 2 2
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 2 2
Shigella_dysenteriae_1617 7 3
Shigella_boydii_Sb227 1 1
Salmonella_bongori_N268-08 19 3
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 12 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 5 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 6 2
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 2 2
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 2 2
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 30 3
Escherichia_coli_E._coli_PMV-1 16 4
Escherichia_coli_JJ1886 24 5
Escherichia_coli_LY180 25 2
Escherichia_coli_APEC_O78 28 2
Escherichia_coli_O7:K1_str._CE10 21 5
Escherichia_coli_O104:H4_str._2009EL-2050 11 3
Escherichia_coli_O104:H4_str._2009EL-2071 11 3
Escherichia_coli_O104:H4_str._2011C-3493 10 2
Escherichia_coli_NA114 21 5
Escherichia_coli_P12b 19 2
Escherichia_coli_str._'clone_D_i2' 15 3
Escherichia_coli_str._'clone_D_i14' 15 3
Escherichia_coli_UM146 9 2
Escherichia_coli_042 46 4
Escherichia_coli_Xuzhou21 46 8
Escherichia_coli_IHE3034 13 5
Escherichia_coli_UMNK88 28 6
Escherichia_coli_O83:H1_str._NRG_857C 9 2
Escherichia_coli_ABU_83972 15 2
Escherichia_coli_KO11FL 9 1
Escherichia_coli_KO11FL 9 1
Escherichia_coli_LF82 15 4
Escherichia_coli_ED1a 17 2
Escherichia_coli_IAI39 19 2
Escherichia_coli_UMN026 58 7
Escherichia_coli_55989 10 2
Escherichia_coli_S88 20 4
Escherichia_coli_IAI1 27 4
Escherichia_coli_W 9 1
Escherichia_coli_W 9 1
Escherichia_coli_DH1 16 1
Escherichia_coli_DH1 16 1
Escherichia_coli_ATCC_8739 8 1
Escherichia_coli_BL21(DE3) 16 1
Escherichia_coli_BL21(DE3) 16 1
Escherichia_coli_SMS-3-5 54 4
Escherichia_coli_SE15 16 3
Escherichia_coli_SE11 31 5
Escherichia_coli_APEC_O1 16 3
Escherichia_coli_O103:H2_str._12009 14 4
Escherichia_coli_UTI89 17 5
Escherichia_coli_536 16 3
Escherichia_coli_HS 9 1
Escherichia_coli_ETEC_H10407 16 4
Escherichia_coli_O55:H7_str._RM12579 47 9
Escherichia_coli_O55:H7_str._CB9615 46 8
Escherichia_coli_O26:H11_str._11368 19 9
Escherichia_coli_CFT073 16 4
Escherichia_coli_O111:H-_str._11128 5 3
Escherichia_coli_O127:H6_str._E2348/69 13 4
Escherichia_coli_O157:H7_str._TW14359 46 8
Escherichia_coli_O157:H7_str._EC4115 36 7
Escherichia_coli_O157:H7_str._Sakai 46 9
Escherichia_coli_O157:H7_str._EDL933 46 8
Escherichia_coli_str._K-12_substr._MDS42 16 1
Escherichia_coli_BW2952 16 1
Escherichia_coli_str._K-12_substr._MG1655 16 1
Escherichia_coli_str._K-12_substr._W3110 16 1
Escherichia_coli_str._K-12_substr._DH10B 16 1
Escherichia_coli_B_str._REL606 24 2
Enterobacter_cloacae_SCF1 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 10 3
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_R124 3 2
Pseudomonas_fluorescens_Pf0-1 2 2
Pseudomonas_aeruginosa_NCGM2.S1 2 1
Acinetobacter_baumannii_ZW85-1 1 1
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_ACICU 1 1
Acinetobacter_radioresistens__SH164 2 1
Acinetobacter_junii__SH205 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Methanomethylovorans_hollandica_DSM_15978 3 3
Methanolobus_psychrophilus_R15 7 6
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1 1
Natrinema_pellirubrum_DSM_15624 2 2
Halorhabdus_tiamatea_SARL4B 3 3
Natronomonas_moolapensis_8.8.11 2 2
Haloarcula_hispanica_N601 3 3
Methanobacterium_sp._SWAN-1 6 5

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   3 2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3 2
Gorilla_gorilla_69_3.1   (Western gorilla)   3 2
Pongo_abelii_69_2   (Sumatran orangutan)   3 2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 2
Macaca_mulatta_69_1   (Rhesus monkey)   3 2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3 2
Otolemur_garnettii_69_3   (Small-eared galago)   3 2
Microcebus_murinus_69_1   (Gray mouse lemur)   3 2
Rattus_norvegicus_69_3.4   (Norway rat)   3 2
Mus_musculus_69_38   (House mouse)   3 2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2 2
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_69_2   (Rabbit)   3 2
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   1 1
Sus_scrofa_69_10.2   (Pig)   1 1
Bos_taurus_69_3.1   (Cattle)   2 2
Vicugna_pacos_69_1   (Alpaca)   2 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 2
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 2
Canis_familiaris_69_3.1   (Dog)   3 2
Felis_catus_69   (Domestic cat)   3 2
Equus_caballus_69_2   (Horse)   3 2
Myotis_lucifugus_69_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_69_1   (Large flying fox)   3 2
Sorex_araneus_69_1   (European shrew)   2 1
Erinaceus_europaeus_69   (Western European hedgehog)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   1 1
Loxodonta_africana_69_3   (African savanna elephant)   4 2
Echinops_telfairi_69   (Small Madagascar hedgehog)   3 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2 2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4 2
Ornithorhynchus_anatinus_69_5   (Platypus)   2 2
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   3 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 2
Anolis_carolinensis_69_2.0   (Green anole)   4 2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_69_1   (Coelacanth)   2 1
Gadus_morhua_69_1   (Atlantic cod)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   2 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1 1
Oryzias_latipes_69_1   (Japanese medaka)   2 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1
Danio_rerio_69_9   (Zebrafish)   2 2
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   6 4
Homo_sapiens__(NCBI_version)   (Human)   5 3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 2
Loa_loa_v3.3_(Request)   (Eye worm)   2 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   1 1
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2 1
Acholeplasma_laidlawii_PG-8A_(duplicate) 14 5
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 18 7
NCBI_plasmid_sequences_(Plasmids) 177 96
STRING_v9.0.5_(STRING) 2834 1011
Uniprot_2018_03_genome 57637 28072
PDB_chains_(SCOP_1.75)_(PDB) 7 3
NCBI_2017_08_genome 253747 90589
Protozoadb_2010_08_(Protozoadb) 26 16
TargetDB__(Targets) 108 88
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 129 129
UniProt__viral_sequences_(Viral) 65 60
Protein_Data_Bank_(all_PDB_sequenc) 67 52
NCBI_viral_sequences_(Viral) 183 160

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