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Domain combinations for Carbohydrate-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Carbohydrate-binding domain domain in that genome.

Complete genomes
Genome Number Proteins

Oikopleura_dioica 2 2

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 1 1

Ciona_intestinalis_76 (Vase tunicate) 3 3

Adineta_vaga 2 2

Octopus_bimaculoides_280 3 3

Crassostrea_gigas_22 (Pacific oyster) 10 8

Lottia_gigantea_ (Owl limpet) 11 10

Helobdella_robusta_ 1 1

Capitella_sp._I_ 3 3

Daphnia_pulex_ (Common water flea) 3 3

Meloidogyne_incognita_ (Southern root-knot nematode) 14 14

Meloidogyne_hapla_ 3 3

Mnemiopsis_leidyi (Sea walnut) 2 1

Acropora_digitifera_v1.0 4 4

Nematostella_vectensis_1.0 (Starlet sea anemone) 3 3

Amphimedon_queenslandica 2 1

Proterospongia_sp._ATCC_50818_ 11 7

Monosiga_brevicollis_ 3 2

Sphaeroforma_arctica_JP610_ 4 3

Capsaspora_owczarzaki_ATCC_30864_ 1 1

Spizellomyces_punctatus_DAOM_BR117_ 1 1

Dictyostelium_discoideum 28 25

Dictyostelium_purpureum_ 22 21

Selaginella_moellendorffii_ 2 2

Eucalyptus_grandis_v201 (Rose gum) 1 1

Citrus_clementina_v165 1 1

Citrus_sinensis_v154 (Sweet orange) 1 1

Thellungiella_halophila_v173 1 1

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 1 1

Capsella_rubella_v183 1 1

Carica_papaya_ (Papaya) 2 2

Phaseolus_vulgaris_v186 (French bean) 1 1

Glycine_max_v109 (Soybean) 1 1

Cucumis_sativus_v122 (Cucumber) 1 1

Fragaria_vesca_ (Wild strawberry) 1 1

Malus_domestica_v196 (Apple) 3 3

Linum_usitatissimum_v200 (Flax) 7 7

Vitis_vinifera_ (Wine grape) 1 1

Mimulus_guttatus_v140 (Spotted monkey flower) 1 1

Solanum_lycopersicum_v.2.3 (Tomato) 1 1

Solanum_tuberosum_ (Potato) 1 1

Triticum_aestivum_22 (Bread wheat) 1 1

Brachypodium_distachyon_ (Stiff brome) 1 1

Oryza_brachyantha_22 (Malo sina) 1 1

Physcomitrella_patens 2 2

Chlorella_variabilis_sp._NC64A_ 1 1

Cyanophora_paradoxa_ 1 1

Plasmodium_yoelii_ssp._yoelii_1_ 1 1

Guillardia_theta_CCMP2712_v1.0_ 1 1

Synechocystis_sp._PCC_6803 2 1

Synechococcus_sp._PCC_6312 3 2

Synechococcus_sp._CC9311 1 1

Microcoleus_sp._PCC_7113 1 1

Gloeocapsa_sp._PCC_7428 1 1

Rivularia_sp._PCC_7116 3 2

Calothrix_sp._PCC_7507 1 1

Nostoc_sp._PCC_7524 1 1

Conexibacter_woesei_DSM_14684 1 1

Ilumatobacter_coccineus 1 1

Acidimicrobium_ferrooxidans_DSM_10331 2 1

Thermobispora_bispora_DSM_43833 16 16

Acidothermus_cellulolyticus_11B 19 10

Catenulispora_acidiphila_DSM_44928 33 32

Stackebrandtia_nassauensis_DSM_44728 2 2

Frankia_sp._EAN1pec 1 1

Thermobifida_fusca_YX 16 15

Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 14 14

Thermomonospora_curvata_DSM_43183 2 2

Streptosporangium_roseum_DSM_43021 19 17

Kitasatospora_setae_KM-6054 16 15

Streptomyces_coelicolor_A3(2) 15 15

Streptomyces_sp._PAMC26508 15 15

Streptomyces_flavogriseus_ATCC_33331 15 15

Streptomyces_sp._SirexAA-E 13 13

Streptomyces_griseus_subsp._griseus_NBRC_13350 4 4

Streptomyces_bingchenggensis_BCW-1 6 6

Streptomyces_violaceusniger_Tu_4113 3 3

Streptomyces_avermitilis_MA-4680 12 12

Streptomyces_cattleya_NRRL_8057_=_DSM_46488 4 4

Streptomyces_scabiei_87.22 16 16

Streptomyces_hygroscopicus_subsp._jinggangensis_5008 12 12

Actinosynnema_mirum_DSM_43827 30 30

Saccharomonospora_viridis_DSM_43017 1 1

Amycolatopsis_mediterranei_U32 32 31

Kribbella_flavida_DSM_17836 1 1

Nocardioides_sp._JS614 3 1

Salinispora_arenicola_CNS-205 6 6

Salinispora_tropica_CNB-440 7 7

Verrucosispora_maris_AB-18-032 36 35

Micromonospora_sp._L5 43 42

Micromonospora_aurantiaca_ATCC_27029 43 42

Actinoplanes_sp._N902-109 46 45

Actinoplanes_sp._SE50/110 27 27

Actinoplanes_missouriensis_431 24 23

Mycobacterium_massiliense_str._GO_06 1 1

Mycobacterium_abscessus_ATCC_19977 1 1

Mycobacterium_intracellulare_ATCC_13950 1 1

Mycobacterium_avium_104 1 1

Mycobacterium_vanbaalenii_PYR-1 2 1

Mycobacterium_canettii_CIPT_140010059 1 1

Mycobacterium_africanum_GM041182 2 2

Mycobacterium_tuberculosis_KZN_1435 2 2

Mycobacterium_tuberculosis 1 1

Mycobacterium_ulcerans_Agy99 5 3

Mycobacterium_gilvum_PYR-GCK 2 1

Mycobacterium_marinum_M 5 3

Leifsonia_xyli_subsp._xyli_str._CTCB07 1 1

Microbacterium_testaceum_StLB037 2 2

Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 2 2

Jonesia_denitrificans_DSM_20603 11 10

Xylanimonas_cellulosilytica_DSM_15894 8 8

Cellulomonas_flavigena_DSM_20109 39 35

Cellulomonas_fimi_ATCC_484 20 18

[Cellvibrio]_gilvus_ATCC_13127 19 17

Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2 2

Herpetosiphon_aurantiacus_DSM_785 15 14

Chloroflexus_aggregans_DSM_9485 2 1

Deinococcus_maricopensis_DSM_21211 2 2

Clostridium_clariflavum_DSM_19732 74 27

Eubacterium_siraeum 2 2

Clostridium_cellulolyticum_H10 22 12

Clostridium_thermocellum_ATCC_27405 53 28

Ruminococcus_bromii 4 4

Ruminococcus_albus_7 11 10

butyrate-producing_bacterium_SS3/4 1 1

butyrate-producing_bacterium_SM4/1 1 1

Desulfosporosinus_orientis_DSM_765 1 1

Desulfitobacterium_hafniense_Y51 1 1

Desulfitobacterium_dehalogenans_ATCC_51507 1 1

Desulfotomaculum_acetoxidans_DSM_771 5 2

Acetobacterium_woodii_DSM_1030 2 2

Eubacterium_eligens_ATCC_27750 2 2

Eubacterium_limosum_KIST612 2 2

Clostridium_saccharolyticum_WM1 2 2

Clostridium_phytofermentans_ISDg 6 5

Clostridium_lentocellum_DSM_5427 28 22

[Ruminococcus]_torques 1 1

Eubacterium_rectale_M104/1 2 1

Eubacterium_rectale_ATCC_33656 3 2

Coprococcus_sp._ART55/1 2 2

Roseburia_hominis_A2-183 1 1

Butyrivibrio_proteoclasticus_B316 11 8

Butyrivibrio_fibrisolvens 11 10

Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1

Clostridium_sp._BNL1100 19 11

Clostridium_ljungdahlii_DSM_13528 1 1

Clostridium_perfringens_ATCC_13124 5 5

Clostridium_cellulovorans_743B 27 17

Clostridium_botulinum_A_str._ATCC_3502 1 1

Clostridium_acetobutylicum_ATCC_824 9 4

Mahella_australiensis_50-1_BON 2 2

Caldicellulosiruptor_obsidiansis_OB47 10 4

Caldicellulosiruptor_kronotskyensis_2002 16 8

Caldicellulosiruptor_lactoaceticus_6A 16 6

Caldicellulosiruptor_kristjanssonii_177R1B 6 3

Caldicellulosiruptor_saccharolyticus_DSM_8903 12 6

Caldicellulosiruptor_bescii_DSM_6725 16 7

Tepidanaerobacter_acetatoxydans_Re1 1 1

Acetohalobium_arabaticum_DSM_5501 1 1

Halothermothrix_orenii_H_168 1 1

Halanaerobium_hydrogeniformans 1 1

Halanaerobium_praevalens_DSM_2228 1 1

Lactobacillus_casei_ATCC_334 1 1

Lactobacillus_plantarum_JDM1 1 1

Paenibacillus_sp._JDR-2 20 19

Paenibacillus_terrae_HPL-003 5 5

Paenibacillus_mucilaginosus_3016 13 13

Paenibacillus_polymyxa_M1 5 5

Bacillus_selenitireducens_MLS10 1 1

Solibacillus_silvestris_StLB046 1 1

Oceanobacillus_iheyensis_HTE831 1 1

Bacillus_sp._JS 1 1

Bacillus_amyloliquefaciens_FZB42 1 1

Bacillus_subtilis_subsp._subtilis_str._168 1 1

Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 2

Bacillus_weihenstephanensis_KBAB4 1 1

Bacillus_thuringiensis_str._Al_Hakam 3 3

Bacillus_cereus_03BB102 3 3

Bacillus_anthracis_str._A0248 1 1

Bacillus_pumilus_SAFR-032 1 1

Candidatus_Cloacamonas_acidaminovorans 3 2

Melioribacter_roseus_P3M 5 3

Haliscomenobacter_hydrossis_DSM_1100 34 28

Niastella_koreensis_GR20-10 4 2

Chitinophaga_pinensis_DSM_2588 1 1

Salinibacter_ruber_M8 2 2

Rhodothermus_marinus_DSM_4252 1 1

Cyclobacterium_marinum_DSM_745 1 1

Fibrella_aestuarina 4 2

Dyadobacter_fermentans_DSM_18053 1 1

Spirosoma_linguale_DSM_74 4 3

Runella_slithyformis_DSM_19594 2 2

Prevotella_melaninogenica_ATCC_25845 1 1

Bacteroides_thetaiotaomicron_VPI-5482 1 1

Bacteroides_fragilis_YCH46 1 1

Pedobacter_saltans_DSM_12145 1 1

Solitalea_canadensis_DSM_3403 2 2

Sphingobacterium_sp._21 1 1

Robiginitalea_biformata_HTCC2501 1 1

Ornithobacterium_rhinotracheale_DSM_15997 1 1

Capnocytophaga_canimorsus_Cc5 1 1

Rhodopirellula_baltica_SH_1 1 1

Akkermansia_muciniphila_ATCC_BAA-835 1 1

Spirochaeta_thermophila_DSM_6192 2 2

Marinitoga_piezophila_KA3 2 2

Mesotoga_prima_MesG1.Ag.4.2 2 2

Kosmotoga_olearia_TBF_19.5.1 1 1

Thermosipho_melanesiensis_BI429 1 1

Caldisericum_exile_AZM16c01 2 2

Candidatus_Chloracidobacterium_thermophilum_B 1 1

Candidatus_Solibacter_usitatus_Ellin6076 1 1

Granulicella_tundricola_MP5ACTX9 1 1

Granulicella_mallensis_MP5ACTX8 2 2

Candidatus_Koribacter_versatilis_Ellin345 1 1

Terriglobus_saanensis_SP1PR4 2 2

Terriglobus_roseus_DSM_18391 3 3

Acidobacterium_capsulatum_ATCC_51196 1 1

Candidatus_Nitrospira_defluvii 1 1

candidate_division_SR1_bacterium_RAAC1_SR1_1 1 1

Syntrophobacter_fumaroxidans_MPOB 2 2

Desulfatibacillum_alkenivorans_AK-01 6 6

Desulfococcus_oleovorans_Hxd3 2 2

Geobacter_daltonii_FRC-32 2 2

Geobacter_sp._M21 2 2

Geobacter_uraniireducens_Rf4 3 3

Geobacter_lovleyi_SZ 1 1

Geobacter_bemidjiensis_Bem 3 3

Geobacter_sulfurreducens_KN400 2 2

Geobacter_metallireducens_GS-15 3 3

Pelobacter_carbinolicus_DSM_2380 1 1

Haliangium_ochraceum_DSM_14365 2 2

Sorangium_cellulosum_'So_ce_56' 9 9

Stigmatella_aurantiaca_DW4/3-1 7 7

Chromobacterium_violaceum_ATCC_12472 1 1

Leptothrix_cholodnii_SP-6 1 1

Ralstonia_solanacearum_CFBP2957 3 3

Burkholderia_sp._RPE64 1 1

Burkholderia_thailandensis_E264 1 1

Burkholderia_pseudomallei_1106a 1 1

Burkholderia_mallei_SAVP1 1 1

Burkholderia_ambifaria_AMMD 1 1

Burkholderia_cenocepacia_HI2424 1 1

Burkholderia_vietnamiensis_G4 1 1

Burkholderia_gladioli_BSR3 2 2

Acidovorax_citrulli_AAC00-1 2 2

Acidovorax_avenae_subsp._avenae_ATCC_19860 2 2

Nitrosospira_multiformis_ATCC_25196 1 1

Nitrosomonas_sp._Is79A3 1 1

Nitrosomonas_eutropha_C91 1 1

Nitrosomonas_europaea_ATCC_19718 1 1

Sideroxydans_lithotrophicus_ES-1 1 1

Methylotenera_versatilis_301 1 1

Asticcacaulis_excentricus_CB_48 1 1

Azorhizobium_caulinodans_ORS_571 2 1

Saccharophagus_degradans_2-40 20 19

Teredinibacter_turnerae_T7901 28 27

Cellvibrio_japonicus_Ueda107 25 24

Aeromonas_veronii_B565 1 1

Aeromonas_salmonicida_subsp._salmonicida_A449 2 2

Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1

Aliivibrio_salmonicida_LFI1238 1 1

Vibrio_fischeri_MJ11 1 1

Vibrio_sp._Ex25 1 1

Vibrio_harveyi_ATCC_BAA-1116 1 1

Vibrio_parahaemolyticus_RIMD_2210633 1 1

Vibrio_splendidus_LGP32 1 1

Vibrio_anguillarum_775 1 1

Vibrio_furnissii_NCTC_11218 1 1

Vibrio_vulnificus_MO6-24/O 1 1

Vibrio_cholerae_O395 1 1

Photobacterium_profundum_SS9 2 2

Ferrimonas_balearica_DSM_9799 1 1

Shewanella_piezotolerans_WP3 1 1

Shewanella_loihica_PV-4 1 1

Shewanella_halifaxensis_HAW-EB4 1 1

Shewanella_sediminis_HAW-EB3 1 1

Shewanella_denitrificans_OS217 1 1

Shewanella_pealeana_ATCC_700345 1 1

Shewanella_oneidensis_MR-1 1 1

Shewanella_baltica_OS185 2 2

Shewanella_woodyi_ATCC_51908 2 2

Shewanella_sp._MR-4 1 1

Shewanella_amazonensis_SB2B 1 1

Shewanella_violacea_DSS12 5 5

Shewanella_putrefaciens_CN-32 1 1

Colwellia_psychrerythraea_34H 2 2

Pseudoalteromonas_sp._SM9913 1 1

Pseudoalteromonas_atlantica_T6c 4 4

Glaciecola_sp._4H-3-7+YE-5 2 2

Alteromonas_sp._SN2 1 1

Hahella_chejuensis_KCTC_2396 11 10

Methylomonas_methanica_MC09 1 1

Methylococcus_capsulatus_str._Bath 6 3

Xylella_fastidiosa_M23 2 2

Xanthomonas_axonopodis_pv._citri_str._306 1 1

Xanthomonas_albilineans_GPE_PC73 5 5

Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1

Xanthomonas_campestris_pv._campestris_str._B100 1 1

Nitrosococcus_watsonii_C-113 1 1

Photorhabdus_asymbiotica 1 1

Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1

Xenorhabdus_bovienii_SS-2004 1 1

Xenorhabdus_nematophila_ATCC_19061 1 1

Providencia_stuartii_MRSN_2154 1 1

Edwardsiella_ictaluri_93-146 1 1

Edwardsiella_tarda_EIB202 1 1

Yersinia_pseudotuberculosis_IP_31758 1 1

Yersinia_pestis_Pestoides_F 1 1

Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1

Serratia_sp._AS12 1 1

Serratia_plymuthica_AS9 1 1

Serratia_proteamaculans_568 1 1

Pectobacterium_wasabiae_WPP163 1 1

Pectobacterium_sp._SCC3193 1 1

Pectobacterium_atrosepticum_SCRI1043 1 1

Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1

Pantoea_sp._At-9b 1 1

Pantoea_vagans_C9-1 1 1

Erwinia_billingiae_Eb661 1 1

Escherichia_blattae_DSM_4481 1 1

Cronobacter_turicensis_z3032 1 1

Cronobacter_sakazakii_ES15 1 1

Enterobacter_sp._R4-368 1 1

Pyrobaculum_islandicum_DSM_4184 1 1

Methanococcoides_burtonii_DSM_6242 3 3

Methanosarcina_acetivorans_C2A 2 2

Methanosarcina_mazei_Go1 2 2

Methanohalophilus_mahii_DSM_5219 2 2

Methanosphaerula_palustris_E1-9c 6 5

Methanospirillum_hungatei_JF-1 3 3

Methanoplanus_petrolearius_DSM_11571 1 1

Methanoculleus_bourgensis_MS2 3 3

Ferroglobus_placidus_DSM_10642 1 1

Archaeoglobus_fulgidus_DSM_4304 2 2

Thermococcus_kodakarensis_KOD1 2 1

Pyrococcus_furiosus_COM1 1 1

Salinarchaeum_sp._Harcht-Bsk1 1 1

Halopiger_xanaduensis_SH-6 2 2

Haloterrigena_turkmenica_DSM_5511 2 2

Natrinema_sp._J7-2 1 1

Natrialba_magadii_ATCC_43099 3 3

Halogeometricum_borinquense_DSM_11551 1 1

Haloferax_mediterranei_ATCC_33500 1 1

Halorhabdus_utahensis_DSM_12940 2 2

Natronomonas_pharaonis_DSM_2160 4 4

Haloarcula_hispanica_ATCC_33960 1 1

Haloarcula_marismortui_ATCC_43049 3 3

Methanotorris_igneus_Kol_5 6 3

methanocaldococcus_infernus_ME 4 3

Methanothermococcus_okinawensis_IH1 8 5

Methanococcus_aeolicus_Nankai-3 4 3

Methanococcus_maripaludis_C5 1 1

Methanococcus_voltae_A3 3 2

Methanococcus_vannielii_SB 4 3

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Longest transcript per gene
Genome Number Proteins

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 1 1

Ciona_intestinalis_69 (Vase tunicate) 3 3

Others
Genome Number Proteins

Malus_x_domestica_(Duplicate) (Apple) 3 3

Nicotiana_benthamiana_0.4.4_(Early_draft) 1 1

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 1 1

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 1 1

Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1 1

Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1

NCBI_plasmid_sequences_(Plasmids) 27 27

TargetDB__(Targets) 80 41

Protein_Data_Bank_(all_PDB_sequenc) 167 163

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 382 382

STRING_v9.0.5_(STRING) 804 695

Uniprot_2018_03_genome 22690 20914

PDB_chains_(SCOP_1.75)_(PDB) 26 26

NCBI_2017_08_genome 46595 44691

Protozoadb_2010_08_(Protozoadb) 1 1

UniProt__viral_sequences_(Viral) 7 7

NCBI_viral_sequences_(Viral) 7 6

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Domain combinations for Carbohydrate-binding domain superfamily in groups of genomes