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  Home > SCOP hierarchy > Hyaluronate lyase-like, C-terminal domain > Domain combinations

Domain combinations for Hyaluronate lyase-like, C-terminal domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Hyaluronate lyase-like, C-terminal domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Adineta_vaga 1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Hydra_vulgaris 1 1
Monosiga_brevicollis_ 1 1
Phycomyces_blakesleeanus_ 1 1
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 2 2
Sphaerobolus_stellatus_v1.0 2 2
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 2 2
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 4 4
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 2 2
Aspergillus_zonatus_v1.0 2 2
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Streptosporangium_roseum_DSM_43021 2 2
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 2 2
Propionibacterium_acnes_SK137 1 1
Beutenbergia_cavernae_DSM_12333 2 2
Microbacterium_testaceum_StLB037 1 1
Arthrobacter_aurescens_TC1 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 1 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 3 3
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_perfringens_ATCC_13124 1 1
Enterococcus_sp._7L76 1 1
Enterococcus_hirae_ATCC_9790 1 1
Enterococcus_faecalis_62 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_rhamnosus_Lc_705 1 1
Lactococcus_garvieae_ATCC_49156 1 1
Streptococcus_intermedius_JTH08 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_parauberis_KCTC_11537 1 1
Streptococcus_pneumoniae_P1031 1 1
Streptococcus_agalactiae_A909 1 1
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_mucilaginosus_3016 3 3
Bacillus_selenitireducens_MLS10 1 1
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Staphylococcus_aureus 1 1
Niastella_koreensis_GR20-10 1 1
Cyclobacterium_marinum_DSM_745 2 2
Runella_slithyformis_DSM_19594 1 1
Bacteroides_helcogenes_P_36-108 2 2
Bacteroides_thetaiotaomicron_VPI-5482 3 3
Pedobacter_saltans_DSM_12145 3 3
Pedobacter_heparinus_DSM_2366 7 7
Ornithobacterium_rhinotracheale_DSM_15997 3 3
Flavobacterium_columnare_ATCC_49512 2 2
Opitutus_terrae_PB90-1 1 1
Treponema_brennaborense_DSM_12168 2 2
Granulicella_mallensis_MP5ACTX8 1 1
Streptobacillus_moniliformis_DSM_12112 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Helicobacter_felis_ATCC_49179 1 1
Vibrio_fischeri_MJ11 1 1
Vibrio_vulnificus_MO6-24/O 2 2
Photobacterium_profundum_SS9 1 1
Proteus_mirabilis_HI4320 2 2
Edwardsiella_ictaluri_93-146 2 2
Edwardsiella_tarda_EIB202 2 2
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_pestis_Pestoides_F 1 1
Cronobacter_turicensis_z3032 1 1
Halomicrobium_mukohataei_DSM_12286 1 1

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Strains
Genome     Number   Proteins
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Propionibacterium_acnes_ATCC_11828 1 1
Propionibacterium_acnes_TypeIA2_P.acn31 1 1
Propionibacterium_acnes_TypeIA2_P.acn17 1 1
Propionibacterium_acnes_TypeIA2_P.acn33 1 1
Propionibacterium_acnes_C1 1 1
Propionibacterium_acnes_HL096PA1 1 1
Propionibacterium_acnes_6609 1 1
Propionibacterium_acnes_266 1 1
Propionibacterium_acnes_KPA171202 1 1
Erysipelothrix_rhusiopathiae_SY1027 3 3
Clostridium_perfringens_SM101 1 1
Clostridium_botulinum_BKT015925 1 1
Enterococcus_mundtii_QU_25 1 1
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 2 2
Enterococcus_faecalis_OG1RF 2 2
Enterococcus_faecalis_V583 2 2
Lactobacillus_paracasei_subsp._paracasei_8700:2 1 1
Lactobacillus_casei_LOCK919 1 1
Lactobacillus_casei_W56 1 1
Lactobacillus_casei_LC2W 1 1
Lactobacillus_casei_BD-II 1 1
Lactobacillus_casei_BL23 1 1
Lactobacillus_casei_str._Zhang 1 1
Lactobacillus_rhamnosus_LOCK908 1 1
Lactobacillus_rhamnosus_LOCK900 1 1
Lactobacillus_rhamnosus_ATCC_8530 1 1
Lactococcus_garvieae_Lg2 1 1
Streptococcus_constellatus_subsp._pharyngis_C1050 1 1
Streptococcus_constellatus_subsp._pharyngis_C818 1 1
Streptococcus_constellatus_subsp._pharyngis_C232 1 1
Streptococcus_intermedius_B196 1 1
Streptococcus_intermedius_C270 1 1
Streptococcus_anginosus_C238 1 1
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 1 1
Streptococcus_equi_subsp._zooepidemicus 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_pneumoniae_A026 1 1
Streptococcus_pneumoniae_ST556 1 1
Streptococcus_pneumoniae_SPNA45 1 1
Streptococcus_pneumoniae_INV104 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_pneumoniae_ATCC_700669 1 1
Streptococcus_pneumoniae_TCH8431/19A 1 1
Streptococcus_pneumoniae_CGSP14 1 1
Streptococcus_pneumoniae_G54 1 1
Streptococcus_pneumoniae_JJA 1 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_Hungary19A-6 1 1
Streptococcus_pneumoniae_Taiwan19F-14 1 1
Streptococcus_pneumoniae_D39 1 1
Streptococcus_pneumoniae_670-6B 1 1
Streptococcus_pneumoniae_R6 1 1
Streptococcus_pneumoniae_TIGR4 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_2-22 1 1
Streptococcus_agalactiae_SA20-06 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Streptococcus_suis_T15 1 1
Streptococcus_suis_SC070731 1 1
Streptococcus_suis_S735 1 1
Streptococcus_suis_ST3 1 1
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 1 1
Streptococcus_suis_ST1 1 1
Streptococcus_suis_A7 1 1
Streptococcus_suis_JS14 1 1
Streptococcus_suis_GZ1 1 1
Streptococcus_suis_98HAH33 1 1
Streptococcus_suis_05ZYH33 1 1
Paenibacillus_mucilaginosus_KNP414 3 3
Paenibacillus_mucilaginosus_K02 3 3
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Bacillus_cereus_E33L 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 1 1
Staphylococcus_aureus_08BA02176 2 2
Staphylococcus_aureus_ST228/18412 1 1
Staphylococcus_aureus_ST228/18341 1 1
Staphylococcus_aureus_ST228/16125 1 1
Staphylococcus_aureus_ST228/16035 1 1
Staphylococcus_aureus_ST228/15532 1 1
Staphylococcus_aureus_ST228/10497 1 1
Staphylococcus_aureus_ST228/10388 1 1
Staphylococcus_aureus_04-02981 1 1
Staphylococcus_aureus_RF122 2 2
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_6850 2 2
Staphylococcus_aureus_subsp._aureus_SA957 2 2
Staphylococcus_aureus_subsp._aureus_CN1 1 1
Staphylococcus_aureus_subsp._aureus_SA40 2 2
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_M013 2 2
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_VC40 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_LGA251 2 2
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1 1
Staphylococcus_aureus_subsp._aureus_JKD6159 2 2
Staphylococcus_aureus_subsp._aureus_ED133 1 1
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 2 2
Staphylococcus_aureus_subsp._aureus_TCH60 2 2
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_71193 2 2
Staphylococcus_aureus_subsp._aureus_S0385 2 2
Staphylococcus_aureus_subsp._aureus_str._Newman 1 1
Staphylococcus_aureus_subsp._aureus_Mu3 1 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1 1
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 2 2
Staphylococcus_aureus_subsp._aureus_MW2 1 1
Staphylococcus_aureus_subsp._aureus_N315 1 1
Staphylococcus_aureus_subsp._aureus_Mu50 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Echinicola_vietnamensis_DSM_17526 2 2
Prevotella_dentalis_DSM_3688 1 1
Alistipes_shahii_WAL_8301 3 3
Bacteroides_xylanisolvens_XB1A 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Vibrio_fischeri_ES114 1 1
Vibrio_sp._EJY3 3 3
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 2 2
Vibrio_vulnificus_YJ016 4 4
Proteus_mirabilis_BB2000 2 2
Edwardsiella_tarda_C07-087 2 2
Edwardsiella_tarda_FL6-60 2 2
Yersinia_pseudotuberculosis_PB1/+ 1 1
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 3 3
PDB_chains_(SCOP_1.75)_(PDB) 20 20
Protein_Data_Bank_(all_PDB_sequenc) 47 47
STRING_v9.0.5_(STRING) 103 103
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 135 135
Uniprot_2018_03_genome 2810 2787
NCBI_2017_08_genome 23434 23399

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.