Domain combinations for STI-like superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a STI-like domain in that genome.

Complete genomes

Genome		Number	Proteins
Meloidogyne_hapla_		1	1
Dictyostelium_purpureum_		1	1
Pinus_taeda	(Loblolly pine)	4	4
Picea_abies	(Norway spruce)	1	1
Eucalyptus_grandis_v201	(Rose gum)	4	4
Theobroma_cacao_B97-61/B2_v1	(Cacao)	8	8
Gossypium_raimondii_v221		8	8
Citrus_clementina_v165		27	27
Citrus_sinensis_v154	(Sweet orange)	17	17
Thellungiella_halophila_v173		8	8
Brassica_rapa_Chiifu-401_1.2	(Field mustard)	36	35
Capsella_rubella_v183		8	8
Arabidopsis_lyrata_	(Lyrate rockcress)	9	9
Arabidopsis_thaliana_10	(Thale cress)	7	7
Carica_papaya_	(Papaya)	6	6
Medicago_truncatula_	(Barrel medic)	50	50
Phaseolus_vulgaris_v186	(French bean)	17	17
Glycine_max_v109	(Soybean)	48	48
Cucumis_sativus_v122	(Cucumber)	5	5
Fragaria_vesca_	(Wild strawberry)	5	5
Malus_domestica_v196	(Apple)	4	4
Prunus_persica_v139	(Peach)	3	3
Linum_usitatissimum_v200	(Flax)	21	21
Manihot_esculenta_v147	(Cassava)	5	5
Populus_trichocarpa_v156	(Black cottonwood)	31	31
Vitis_vinifera_	(Wine grape)	6	6
Mimulus_guttatus_v140	(Spotted monkey flower)	1	1
Solanum_lycopersicum_v.2.3	(Tomato)	16	16
Solanum_tuberosum_	(Potato)	36	36
Actinidia_chinensis_Hongyang_		2	2
Aquilegia_coerulea_v195		4	4
Triticum_urartu_22		3	3
Triticum_aestivum_22	(Bread wheat)	5	5
Aegilops_tauschii_22		12	10
Brachypodium_distachyon_	(Stiff brome)	2	2
Oryza_barthii_22	(African wild rice)	1	1
Oryza_meridionalis_22		1	1
Oryza_glumaepatula_22		1	1
Oryza_glaberrima	(African rice)	1	1
Oryza_punctata_22		2	2
Oryza_nivara_22		2	2
Oryza_brachyantha_22	(Malo sina)	2	2
Oryza_sativa_ssp._japonica_5.0	(Japanese rice)	2	2
Oryza_sativa_v193	(Rice)	2	2
Panicum_virgatum_v202	(Switchgrass)	2	2
Setaria_italica_v164	(Foxtail millet)	2	2
Zea_mays_subsp._mays_	(Maize)	1	1
Zea_mays_v181	(Maize)	1	1
Sorghum_bicolor_	(Sorghum)	1	1
Musa_balbisiana	(Balbis banana)	2	2
Musa_acuminata_22	(Wild Malaysian banana)	2	2
Amborella_trichopoda_22		2	2
Clostridium_tetani_E88		1	1
Clostridium_botulinum_A_str._ATCC_3502		1	1
Capnocytophaga_canimorsus_Cc5		1	1

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Strains

Genome		Number	Proteins
Theobroma_cacao_Matina_1-6_v0.9	(Cacao)	8	8
Hordeum_vulgare_22	(Domesticated barley)	2	2
Oryza_sativa_ssp._Indica_(Subspecies)	(Long-grained rice)	1	1
Clostridium_tetani_genome_12124569		1	1
Clostridium_botulinum_H04402_065		1	1
Clostridium_botulinum_BKT015925		1	1
Clostridium_botulinum_F_str._230613		1	1
Clostridium_botulinum_F_str._Langeland		1	1
Clostridium_botulinum_E3_str._Alaska_E43		1	1
Clostridium_botulinum_B1_str._Okra		1	1
Clostridium_botulinum_Ba4_str._657		2	2
Clostridium_botulinum_A2_str._Kyoto		1	1
Clostridium_botulinum_A3_str._Loch_Maree		1	1
Clostridium_botulinum_A_str._Hall		1	1
Clostridium_botulinum_A_str._ATCC_19397		1	1
Bacillus_toyonensis_BCT-7112		1	1
Bacillus_thuringiensis_MC28		1	1
Bacillus_thuringiensis_YBT-1518		6	6

Longest transcript per gene

Genome		Number	Proteins
Arabidopsis_thaliana_10	(Thale cress)	7	7

Others

Genome		Number	Proteins
Lotus_japonicus__(Early_assembly)		23	23
Malus_x_domestica_(Duplicate)	(Apple)	4	4
Ricinus_communis__(Early_assembly)	(Castor bean)	3	3
Nicotiana_benthamiana_0.4.4_(Early_draft)		13	13
Solanum_pimpinellifolium_A-1.0_(Early_draft)	(Currant tomato)	16	16
Solanum_lycopersicum_v2.3_(Early_assembly)	(Tomato)	16	16
NCBI_plasmid_sequences_(Plasmids)		15	15
STRING_v9.0.5_(STRING)		67	67
Protein_Data_Bank_(all_PDB_sequenc)		226	226
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		510	510
NCBI_viral_sequences_(Viral)		1	1
NCBI_2017_08_genome		1534	1527
Uniprot_2018_03_genome		2405	2387
PDB_chains_(SCOP_1.75)_(PDB)		22	22
UniProt__viral_sequences_(Viral)		4	4

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